jgi.p|Nanoce1779_2|591394, mRNA_5103 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591394
Unique NamemRNA_5103
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length546
Alignment locationscaffold_12:469612..470157 +

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Properties
Property NameValue
TranscriptId591480
TrackFilteredModels2
ProteinId591394
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:469612..470157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591394gene_5103Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591394mRNA_5103-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5103CDS_5103Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5103 ID=mRNA_5103|Name=jgi.p|Nanoce1779_2|591394|organism=Nannochloropsis oceanica|type=mRNA|length=546bp
AACAGAAACTTCTCCCAAAATGGAGCAGCAACTGCTAAGCGCGCCCCGAG
TAGACGCTGCGGACATTCGCCAATTCCAGGGCCAGGTGGTGCGCATCGTG
GGAAAGGTAGAGCAAGGTAATCACCCCGTGGCGGTGTTGGCGTGTGGGCC
GGACACTTCGATGCGCGTGCACGTCAAGATGGCCCCCGGGAATCAGTACA
ACACCGCCTACGTAGAGGTCATGGGGCGGGTAAACCATGATGGGATGGAG
GAGATTATGAGCTATGATTTGGGGGATTGCTTTGACATGGGCAATTATCA
GCAGCTTCTGACATTCAGTATGGGGCAGTACCGTCCGCTCTTTGCGTAGA
CCAGGAAAGAGCAGGGAATGAGGGAGATGAGGAGGGAAGGAGGGAGGGGA
AGGGTTTGAAGAAGAAATGACACGCACATACATTTACGCAAGCACGAGGT
AGACAAAGCAAGGATAAGTAGATGCATGCTTATAGTGTCGTGTCAGGAAC
TGTAGAGTGAACACAAAAGCAAAAAAAATGACGGGCCATGTTGGAA
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protein sequence of jgi.p|Nanoce1779_2|591394

>mRNA_5103-protein ID=mRNA_5103-protein|Name=jgi.p|Nanoce1779_2|591394|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MEQQLLSAPRVDAADIRQFQGQVVRIVGKVEQGNHPVAVLACGPDTSMRV
HVKMAPGNQYNTAYVEVMGRVNHDGMEEIMSYDLGDCFDMGNYQQLLTFS
MGQYRPLFA*
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mRNA from alignment at scaffold_12:469612..470157+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5103 ID=mRNA_5103|Name=jgi.p|Nanoce1779_2|591394|organism=Nannochloropsis oceanica|type=mRNA|length=546bp|location=Sequence derived from alignment at scaffold_12:469612..470157+ (Nannochloropsis oceanica)
AACAGAAACTTCTCCCAAAATGGAGCAGCAACTGCTAAGCGCGCCCCGAG
TAGACGCTGCGGACATTCGCCAATTCCAGGGCCAGGTGGTGCGCATCGTG
GGAAAGGTAGAGCAAGGTAATCACCCCGTGGCGGTGTTGGCGTGTGGGCC
GGACACTTCGATGCGCGTGCACGTCAAGATGGCCCCCGGGAATCAGTACA
ACACCGCCTACGTAGAGGTCATGGGGCGGGTAAACCATGATGGGATGGAG
GAGATTATGAGCTATGATTTGGGGGATTGCTTTGACATGGGCAATTATCA
GCAGCTTCTGACATTCAGTATGGGGCAGTACCGTCCGCTCTTTGCGTAGA
CCAGGAAAGAGCAGGGAATGAGGGAGATGAGGAGGGAAGGAGGGAGGGGA
AGGGTTTGAAGAAGAAATGACACGCACATACATTTACGCAAGCACGAGGT
AGACAAAGCAAGGATAAGTAGATGCATGCTTATAGTGTCGTGTCAGGAAC
TGTAGAGTGAACACAAAAGCAAAAAAAATGACGGGCCATGTTGGAA
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Coding sequence (CDS) from alignment at scaffold_12:469612..470157+

>mRNA_5103 ID=mRNA_5103|Name=jgi.p|Nanoce1779_2|591394|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_12:469612..470157+ (Nannochloropsis oceanica)
ATGGAGCAGCAACTGCTAAGCGCGCCCCGAGTAGACGCTGCGGACATTCG
CCAATTCCAGGGCCAGGTGGTGCGCATCGTGGGAAAGGTAGAGCAAGGTA
ATCACCCCGTGGCGGTGTTGGCGTGTGGGCCGGACACTTCGATGCGCGTG
CACGTCAAGATGGCCCCCGGGAATCAGTACAACACCGCCTACGTAGAGGT
CATGGGGCGGGTAAACCATGATGGGATGGAGGAGATTATGAGCTATGATT
TGGGGGATTGCTTTGACATGGGCAATTATCAGCAGCTTCTGACATTCAGT
ATGGGGCAGTACCGTCCGCTCTTTGCGTAG
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Synonyms
Publications