jgi.p|Nanoce1779_2|53858, mRNA_5101 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|53858
Unique Name	mRNA_5101
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1008
Alignment location	scaffold_12:463365..464912 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	53944
Track	FilteredModels2
ProteinId	53858

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:463365..464912 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|53858	gene_5101	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|53858	mRNA_5101-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5101	CDS_5101	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:463365..464912+
coding sequence from alignment at scaffold_12:463365..464912+

mRNA sequence

>mRNA_5101 ID=mRNA_5101|Name=jgi.p|Nanoce1779_2|53858|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp
TCCATTTTCTAGAAATTTCGAATTGCATGCTATTTTTTGGGCTCTCTACC
GGGCCCATCCTGCCATCGCCCGTGCTGGCCCTGCTGCTGCCGCCACTGCA
GCCACGTCTTCAGCTGTGGACGCAGAGGAGAACGAAGGGAAGGACATGCC
TTCAGGTCTCGAAGGTCCTGGGAGCAGCAGCAGTAGCGGCAGCAGTAATA
GTGGTGCGGTGAAGGCGGCAGCTCAGGTATTGGGAGAACACCATCAGTTG
AACTACCCCTGCAACAGCGTCTCGAGAGATGTGGTTGTCTTTATGGAGGC
GCGAAAACCCGTTTTGTGTAACAATCAGAAGAAGATTTTTATGCTCCGGG
GGAACTTGCACCACGACACGAGCCTGTTCCAAGGCCGGGCGTGGCTGCAA
ATCCCGGCGGGGAAGACATGGGAGTGCTGCAAGCTAGCGGATCCCAACTC
CACACAAAACGTCCTCTGGTGCCGCGGGGGCAAGGCACTGGAAGCCTACG
AGACTCTGCGCTCCCATATATTTTCTTGGCACGACTCGGGTGTGTTTACG
GCGTGCAGACATTGCAATCGCGTGTATCAGAACACGAGGGCCTTTTTGAG
TCACGGATGCGTCAAGAAGAGCCCCGCTGGCCTCCTAGACGATCCTTACA
AGGATGATACTGCTGTTGCGTCGTGCTCGCAATCCATGTGGTCCTTCCTA
GAGGTGTCACCTGATTTCGCCCAGCTGTTTTACCAGTTGCAGTCGCTTCC
GACGGACAGAAAGGAGGAGGTTTTCGATCGAGTGAGTAAGAGGTTGAAGT
CCACCACCAATCTCTAGGGGGGCGGGGGAGGAAGGGAGGGAGGGAGGAAG
ACGAGGAAGGGTTGTGTCGAAAGCTTTCACGAGAGGCGGAGCTGCAGCCG
CTGCCGAAGGAGGGAGGGAGGGCGAGAACGCGAGGAACAGGGAGGCTGTT
TGTATTCAAATAGAGTAGTGACAATAGATAGTGATACAATCATAGAGTTG
GAGAGGGG

protein sequence of jgi.p|Nanoce1779_2|53858

>mRNA_5101-protein ID=mRNA_5101-protein|Name=jgi.p|Nanoce1779_2|53858|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MPSGLEGPGSSSSSGSSNSGAVKAAAQVLGEHHQLNYPCNSVSRDVVVFM
EARKPVLCNNQKKIFMLRGNLHHDTSLFQGRAWLQIPAGKTWECCKLADP
NSTQNVLWCRGGKALEAYETLRSHIFSWHDSGVFTACRHCNRVYQNTRAF
LSHGCVKKSPAGLLDDPYKDDTAVASCSQSMWSFLEVSPDFAQLFYQLQS
LPTDRKEEVFDRVSKRLKSTTNL*

mRNA from alignment at scaffold_12:463365..464912+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5101 ID=mRNA_5101|Name=jgi.p|Nanoce1779_2|53858|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp|location=Sequence derived from alignment at scaffold_12:463365..464912+ (Nannochloropsis oceanica)
TCCATTTTCTAGAAATTTCGAATTGCATGCTATTTTTTGGGCTCTCTACC
GGGCCCATCCTGCCATCGCCCGTGCTGGCCCTGCTGCTGCCGCCACTGCA
GCCACGTCTTCAGCTGTGGACGCAGAGGAGAACGAAGGGAAGGACATGCC
TTCAGGTCTCGAAGGTCCTGGGAGCAGCAGCAGTAGCGGCAGCAGTAATA
GTGGTGCGGTGAAGGCGGCAGCTCAGGTATTGGGAGAACACCATCAGTTG
AACTACCCCTGCAACAGCGTCTCGAGAGATGTGGTTGTCTTTATGGAGGC
GCGAAAACCCGTTTTGTGTAACAATCAGAAGAAGATTTTTATGCTCCGGG
GGAACTTGCACCACGACACGAGCCTGTTCCAAGGCCGGGCGTGGCTGCAA
ATCCCGGCGGGGAAGACATGGGAGTGCTGCAAGTATGTGACGGGGGGACG
GAGGGGAGGGGGGGAAGGGACAGGAGGGGAGAGGGGAGGGGAAGGATGTC
TTTGTGATTTGGGTCGGCGTGCGCGTGTTTCTCGTGCTTGTCGTCTTCGC
TACTACTTCCTCACTCACTCACTATTCTCTCGTACTGTAATTGTCCACCT
CTTTCGAAACATATTTGCCGAGTACTCTCTCACTCTTCATTCTCTCGAAC
GATGCTTGTCCACCACTTACCAACAGGCTAGCGGATCCCAACTCCACACA
AAACGTCCTCTGGTGCCGCGGGGGCAAGGCACTGGAAGCCTACGAGACTC
TGCGCTCCCATATATTTTCTTGGCACGACTCGGGTGTGTTTACGGCGTGC
AGACATTGCAATCGCGTGTATCAGAACACGAGGGCCTTTTTGAGTCACGG
GTAAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGAATAGGTAA
TTCGTGTGAGATTTTTTTTTTATCAAAGCGGGCCAGCGTGATGTGACCTA
TCCCTCTCCCTCCCTCTTTCCCCTCCTCCTGCTTCCTTTTCCCTACTGCT
GTTCACGCAAAACCCTGCCGGTTCGCCTGACGACCCCCCAGGAGATGATA
TTGCATCATTGCGTCGTGCTCTCACACCACGCCTTTCTCTTTCTCACTCT
CACCCCTCTCCGTCTTGCACTTTTTTCCTCCTTTCCCTCCCTCCAGATGC
GTCAAGAAGAGCCCCGCTGGCCTCCTAGACGATCCTTACAAGGATGATAC
TGCTGTTGCGTCGTGCTCGCAATCCATGTGGTCCTTCCTAGAGGTGTCAC
CTGATTTCGCCCAGCTGTTTTACCAGTTGCAGTCGCTTCCGACGGACAGA
AAGGAGGAGGTTTTCGATCGAGTGAGTAAGAGGTTGAAGTCCACCACCAA
TCTCTAGGGGGGCGGGGGAGGAAGGGAGGGAGGGAGGAAGACGAGGAAGG
GTTGTGTCGAAAGCTTTCACGAGAGGCGGAGCTGCAGCCGCTGCCGAAGG
AGGGAGGGAGGGCGAGAACGCGAGGAACAGGGAGGCTGTTTGTATTCAAA
TAGAGTAGTGACAATAGATAGTGATACAATCATAGAGTTGGAGAGGGG

Coding sequence (CDS) from alignment at scaffold_12:463365..464912+

>mRNA_5101 ID=mRNA_5101|Name=jgi.p|Nanoce1779_2|53858|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_12:463365..464912+ (Nannochloropsis oceanica)
ATGCCTTCAGGTCTCGAAGGTCCTGGGAGCAGCAGCAGTAGCGGCAGCAG
TAATAGTGGTGCGGTGAAGGCGGCAGCTCAGGTATTGGGAGAACACCATC
AGTTGAACTACCCCTGCAACAGCGTCTCGAGAGATGTGGTTGTCTTTATG
GAGGCGCGAAAACCCGTTTTGTGTAACAATCAGAAGAAGATTTTTATGCT
CCGGGGGAACTTGCACCACGACACGAGCCTGTTCCAAGGCCGGGCGTGGC
TGCAAATCCCGGCGGGGAAGACATGGGAGTGCTGCAAGCTAGCGGATCCC
AACTCCACACAAAACGTCCTCTGGTGCCGCGGGGGCAAGGCACTGGAAGC
CTACGAGACTCTGCGCTCCCATATATTTTCTTGGCACGACTCGGGTGTGT
TTACGGCGTGCAGACATTGCAATCGCGTGTATCAGAACACGAGGGCCTTT
TTGAGTCACGGATGCGTCAAGAAGAGCCCCGCTGGCCTCCTAGACGATCC
TTACAAGGATGATACTGCTGTTGCGTCGTGCTCGCAATCCATGTGGTCCT
TCCTAGAGGTGTCACCTGATTTCGCCCAGCTGTTTTACCAGTTGCAGTCG
CTTCCGACGGACAGAAAGGAGGAGGTTTTCGATCGAGTGAGTAAGAGGTT
GAAGTCCACCACCAATCTCTAGATGCCTTCAGGTCTCGAAGGTCCTGGGA
GCAGCAGCAGTAGCGGCAGCAGTAATAGTGGTGCGGTGAAGGCGGCAGCT
CAGGTATTGGGAGAACACCATCAGTTGAACTACCCCTGCAACAGCGTCTC
GAGAGATGTGGTTGTCTTTATGGAGGCGCGAAAACCCGTTTTGTGTAACA
ATCAGAAGAAGATTTTTATGCTCCGGGGGAACTTGCACCACGACACGAGC
CTGTTCCAAGGCCGGGCGTGGCTGCAAATCCCGGCGGGGAAGACATGGGA
GTGCTGCAAGCTAGCGGATCCCAACTCCACACAAAACGTCCTCTGGTGCC
GCGGGGGCAAGGCACTGGAAGCCTACGAGACTCTGCGCTCCCATATATTT
TCTTGGCACGACTCGGGTGTGTTTACGGCGTGCAGACATTGCAATCGCGT
GTATCAGAACACGAGGGCCTTTTTGAGTCACGGATGCGTCAAGAAGAGCC
CCGCTGGCCTCCTAGACGATCCTTACAAGGATGATACTGCTGTTGCGTCG
TGCTCGCAATCCATGTGGTCCTTCCTAGAGGTGTCACCTGATTTCGCCCA
GCTGTTTTACCAGTTGCAGTCGCTTCCGACGGACAGAAAGGAGGAGGTTT
TCGATCGAGTGAGTAAGAGGTTGAAGTCCACCACCAATCTCTAGATGCCT
TCAGGTCTCGAAGGTCCTGGGAGCAGCAGCAGTAGCGGCAGCAGTAATAG
TGGTGCGGTGAAGGCGGCAGCTCAGGTATTGGGAGAACACCATCAGTTGA
ACTACCCCTGCAACAGCGTCTCGAGAGATGTGGTTGTCTTTATGGAGGCG
CGAAAACCCGTTTTGTGTAACAATCAGAAGAAGATTTTTATGCTCCGGGG
GAACTTGCACCACGACACGAGCCTGTTCCAAGGCCGGGCGTGGCTGCAAA
TCCCGGCGGGGAAGACATGGGAGTGCTGCAAGCTAGCGGATCCCAACTCC
ACACAAAACGTCCTCTGGTGCCGCGGGGGCAAGGCACTGGAAGCCTACGA
GACTCTGCGCTCCCATATATTTTCTTGGCACGACTCGGGTGTGTTTACGG
CGTGCAGACATTGCAATCGCGTGTATCAGAACACGAGGGCCTTTTTGAGT
CACGGATGCGTCAAGAAGAGCCCCGCTGGCCTCCTAGACGATCCTTACAA
GGATGATACTGCTGTTGCGTCGTGCTCGCAATCCATGTGGTCCTTCCTAG
AGGTGTCACCTGATTTCGCCCAGCTGTTTTACCAGTTGCAGTCGCTTCCG
ACGGACAGAAAGGAGGAGGTTTTCGATCGAGTGAGTAAGAGGTTGAAGTC
CACCACCAATCTCTAG

Synonyms

Publications