jgi.p|Nanoce1779_2|591387, mRNA_5100 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591387
Unique Name	mRNA_5100
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2503
Alignment location	scaffold_12:461535..464812 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591473
Track	FilteredModels2
ProteinId	591387

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:461535..464812 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591387	gene_5100	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591387	mRNA_5100-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5100	CDS_5100	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:461535..464812+
coding sequence from alignment at scaffold_12:461535..464812+

mRNA sequence

>mRNA_5100 ID=mRNA_5100|Name=jgi.p|Nanoce1779_2|591387|organism=Nannochloropsis oceanica|type=mRNA|length=2503bp
CAGAGGCAACTAGGTAGCTGGGAACGCCAGCCATGGCCTCCTAAATCTCC
GCATTCCTTGCCAAGCCAAGCAAATTCCCACTAGTGTGTCCTTACTCCAT
CCACCGTTCGCTCCACCAGCCATCGTCTTACCCCTTGGGCAGAAGGGAGA
GGACAAGCCGTCCACGAGCACTCCACCAACCATTCTTTCGGCCCCCGCAG
CCATTGACGTTGCCCTTCCTGCTGCTGCTTCCGTCGCAGCTAGCTCGCCC
GCAAACGTCAAAGTGATGGCCTCGACCGCAGCCACTTCCGTCGCTGGAGC
GGCGCCTGCTGACGCCCCTCAAGCTCGCGACAAGTACAAGGGGAAGGGAG
CCATGCCCCTCGACTCTGTCTTGGAGGGCTTGCTCTCTCTCCGTTCCCCC
GCCATGCCGTTATCCTCTCCAGCCGCCACCGCCGGCACGACATTCCCGAG
TAGCTCCCCTGCGGCAGGCCCACCAGTTGGTGCAGCAGCAGCTTGCGCAG
CCACCGACAAGGCCGCCGTCTCCTGCCCTCTGCACCCCTGCCCTTCAGCT
CTCCCAGCCCCTGCTGCTCACTTCATGGACTGCGGTCAAGGCCGTCATCA
ACCAATGGAAGTTTCCCTCCCTCCTTCTCTGTCTCCTTCCCTCCTTTCAC
CGTCCCCGTTTCCTCCCCGTCATCACCCTTGCGCTCCTACCTTCGGGTCA
CGCGACATGTCCTTCTTCCCCCCCCTCCACCAAGGCCCCACCATGTCCCC
CTCCTCTGTCTCGCCCGACCAGAAAGTCAAGCATGCCCCCGCCACTATTG
GATCCAACACAGTCCCTTATTCTCCCCCTCTTCCTCCTCTCCTTCCCCAT
CTTCCTCCTTTCGGCCAGATGGCGGCCGCTGCCACTGTAACCTCCGCAGC
CGCCGTCGTTGCGCATGCCGCGCACGCAGCAGCGGGTGCCGCTGAGAGCA
ACAAGATCCAAGCGGAGAAGCTGCTGGTGTCCATCCCTACTGACTCGCTC
GACACTTCCTCAATCATTGCTTCCGACCCTGCAGACGCCCATCGGCTCGC
CTTGACGGCCGCCAATGCTGCTTCTGTCGCCAGCCACGGGGAGGTAGGAG
AGGAAGAGGGAGATGAGGGGCTGCGTCTCATCATCAACCAGCAGGTCGCA
TTAGTCCCTTCCCAGACGAGTGCGGTCTTGAGTCAAAATCAGGAGTCGAG
GATAAAAAATTTAGAAAAAATTCCTCCAGAAGCCGTCCGGGCCTTGGAGG
CCACGTTGTCTGCTATTCCGGCGTGGGGGGTGAGAATCACCAAGGAGAAG
CTGGAGGTGTTGGGGGCGGTCGTGTTGGGTTCGCCGGTATTGATGGAGGG
GGAGAAGAGCGATGGGCGGGTGGACTACAGCCCGAAGAATTACCACATTG
AGTGCAAGCGTTGCGCCAAGAGGTTCTTGGGAAAGAATGCGTTGAGGTAG
GGTGGGCGGGAGGGAGGGAGGGACGGAGGGAGGGTCGAAAGGAGGGTTGG
ACTCATTAATTGTCCTACTCGGCGTTCGAGCATGTTTTATGCTGCTTCTA
CAGTCACCCTCCCTCGCTCTCTCCCTCCCTTTCTTCCGTCCTCCCTCCAT
TTTCTAGAAATTTCGAATTGCATGCTATTTTTTGGGCTCTCTACCGGGCC
CATCCTGCCATCGCCCGTGCTGGCCCTGCTGCTGCCGCCACTGCAGCCAC
GTCTTCAGCTGTGGACGCAGAGGAGAACGAAGGGAAGGACATGCCTTCAG
GTCTCGAAGGTCCTGGGAGCAGCAGCAGTAGCGGCAGCAGTAATAGTGGT
GCGGTGAAGGCGGCAGCTCAGGTATTGGGAGAACACCATCAGTTGAACTA
CCCCTGCAACAGCGTCTCGAGAGATGTGGTTGTCTTTATGGAGGCGCGAA
AACCCGTTTTGTGTAACAATCAGAAGAAGATTTTTATGCTCCGGGGGAAC
TTGCACCACGACACGAGCCTGTTCCAAGGCCGGGCGTGGCTGCAAATCCC
GGCGGGGAAGACATGGGAGTGCTGCAAGCTAGCGGATCCCAACTCCACAC
AAAACGTCCTCTGGTGCCGCGGGGGCAAGGCACTGGAAGCCTACGAGACT
CTGCGCTCCCATATATTTTCTTGGCACGACTCGGGTGTGTTTACGGCGTG
CAGACATTGCAATCGCGTGTATCAGAACACGAGGGCCTTTTTGAGTCACG
GATGCGTCAAGAAGAGCCCCGCTGGCCTCCTAGACGATCCTTACAAGGAT
GATACTGCTGTTGCGTCGTGCTCGCAATCCATGTGGTCCTTCCTAGAGGT
GTCACCTGATTTCGCCCAGCTGTTTTACCAGTTGCAGTCGCTTCCGACGG
ACAGAAAGGAGGAGGTTTTCGATCGAGTGAGTAAGAGGTTGAAGTCCACC
ACCAATCTCTAGGGGGGCGGGGGAGGAAGGGAGGGAGGGAGGAAGACGAG
GAAGGGTTGTGTCGAAAGCTTTCACGAGAGGCGGAGCTGCAGCCGCTGCC
GAA

protein sequence of jgi.p|Nanoce1779_2|591387

>mRNA_5100-protein ID=mRNA_5100-protein|Name=jgi.p|Nanoce1779_2|591387|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MASTAATSVAGAAPADAPQARDKYKGKGAMPLDSVLEGLLSLRSPAMPLS
SPAATAGTTFPSSSPAAGPPVGAAAACAATDKAAVSCPLHPCPSALPAPA
AHFMDCGQGRHQPMEVSLPPSLSPSLLSPSPFPPRHHPCAPTFGSRDMSF
FPPLHQGPTMSPSSVSPDQKVKHAPATIGSNTVPYSPPLPPLLPHLPPFG
QMAAAATVTSAAAVVAHAAHAAAGAAESNKIQAEKLLVSIPTDSLDTSSI
IASDPADAHRLALTAANAASVASHGEVGEEEGDEGLRLIINQQVALVPSQ
TSAVLSQNQESRIKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEVLG
AVVLGSPVLMEGEKSDGRVDYSPKNYHIECKRCAKRFLGKNALR*

mRNA from alignment at scaffold_12:461535..464812+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5100 ID=mRNA_5100|Name=jgi.p|Nanoce1779_2|591387|organism=Nannochloropsis oceanica|type=mRNA|length=3278bp|location=Sequence derived from alignment at scaffold_12:461535..464812+ (Nannochloropsis oceanica)
CAGAGGCAACTAGGTAGCTGGGAACGCCAGCCATGGCCTCCTAAATCTCC
GCATTCCTTGCCAAGCCAAGCAAATTCCCACTAGTGTGTCCTTACTCCAT
CCACCGTTCGCTCCACCAGCCATCGTCTTACCCCTTGGGCAGAAGGGAGA
GGACAAGCCGTCCACGAGCACTCCACCAACCATTCTTTCGGCCCCCGCAG
CCATTGACGTTGCCCTTCCTGCTGCTGCTTCCGTCGCAGCTAGCTCGCCC
GCAAACGTGTACGTAGCTTTCAAATATTGCAAGAAAACCGAGCACTCACA
ATCGTAGATAGCGAGCCTCTATCCCTTATCAATCGCCTTCTCTCTATCCT
TTCCCGAGACCATAGACCCGACGCTCTATCTCATGTCAATCTCATCATTC
CCGGATAGCTCCGATCTGCTTCTTCTCTTGATATCATTATCCCACACCAC
CTTATTCCCTTTTTGTCCCCCTCCATCCAACCCGCTCATTCAGCAAAGTG
ATGGCCTCGACCGCAGCCACTTCCGTCGCTGGAGCGGCGCCTGCTGACGC
CCCTCAAGCTCGCGACAAGTACAAGGGGAAGGGAGCCATGCCCCTCGACT
CTGTCTTGGAGGGCTTGCTCTCTCTCCGTTCCCCCGCCATGCCGTTATCC
TCTCCAGCCGCCACCGCCGGCACGACATTCCCGAGTAGCTCCCCTGCGGC
AGGCCCACCAGTTGGTGCAGCAGCAGCTTGCGCAGCCACCGACAAGGCCG
CCGTCTCCTGCCCTCTGCACCCCTGCCCTTCAGCTCTCCCAGCCCCTGCT
GCTCACTTCATGGACTGCGGTCAAGGCCGTCATCAACCAATGGAAGTTTC
CCTCCCTCCTTCTCTGTCTCCTTCCCTCCTTTCACCGTCCCCGTTTCCTC
CCCGTCATCACCCTTGCGCTCCTACCTTCGGGTCACGCGACATGTCCTTC
TTCCCCCCCCTCCACCAAGGCCCCACCATGTCCCCCTCCTCTGTCTCGCC
CGACCAGAAAGTCAAGCATGCCCCCGCCACTATTGGATCCAACACAGTCC
CTTATTCTCCCCCTCTTCCTCCTCTCCTTCCCCATCTTCCTCCTTTCGGC
CAGATGGCGGCCGCTGCCACTGTAACCTCCGCAGCCGCCGTCGTTGCGCA
TGCCGCGCACGCAGCAGCGGGTGCCGCTGAGAGCAACAAGATCCAAGCGG
AGAAGCTGCTGGTGTCCATCCCTACTGACTCGCTCGACACTTCCTCAATC
ATTGCTTCCGACCCTGCAGACGCCCATCGGCTCGCCTTGACGGCCGCCAA
TGCTGCTTCTGTCGCCAGCCACGGGGAGGTAGGAGAGGAAGAGGGAGATG
AGGGGCTGCGTCTCATCATCAACCAGCAGGTCGCATTAGTCCCTTCCCAG
ACGAGTGCGGTCTTGAGTCAAAATCAGGAGTCGAGGATAAAAAATTTAGA
AAAAATTCCTCCAGAAGCCGTCCGGGCCTTGGAGGCCACGTTGTCTGCTA
TTCCGGCGTGGGGGGTGAGAATCACCAAGGAGAAGCTGGAGGTGTTGGGG
GCGGTCGTGTTGGGTTCGCCGGTATTGATGGAGGGGGAGAAGAGCGATGG
GCGGGTGGACTACAGCCCGAAGAATTACCACATTGAGTGCAAGCGTTGCG
CCAAGAGGTTCTTGGGAAAGAATGCGTTGAGGTAGGGTGGGCGGGAGGGA
GGGAGGGACGGAGGGAGGGTCGAAAGGAGGGTTGGACTCATTAATTGTCC
TACTCGGCGTTCGAGCATGTTTTATGCTGCTTCTACAGTCACCCTCCCTC
GCTCTCTCCCTCCCTTTCTTCCGTCCTCCCTCCATTTTCTAGAAATTTCG
AATTGCATGCTATTTTTTGGGCTCTCTACCGGGCCCATCCTGCCATCGCC
CGTGCTGGCCCTGCTGCTGCCGCCACTGCAGCCACGTCTTCAGCTGTGGA
CGCAGAGGAGAACGAAGGGAAGGACATGCCTTCAGGTCTCGAAGGTCCTG
GGAGCAGCAGCAGTAGCGGCAGCAGTAATAGTGGTGCGGTGAAGGCGGCA
GCTCAGGTATTGGGAGAACACCATCAGTTGAACTACCCCTGCAACAGCGT
CTCGAGAGATGTGGTTGTCTTTATGGAGGCGCGAAAACCCGTTTTGTGTA
ACAATCAGAAGAAGATTTTTATGCTCCGGGGGAACTTGCACCACGACACG
AGCCTGTTCCAAGGCCGGGCGTGGCTGCAAATCCCGGCGGGGAAGACATG
GGAGTGCTGCAAGTATGTGACGGGGGGACGGAGGGGAGGGGGGGAAGGGA
CAGGAGGGGAGAGGGGAGGGGAAGGATGTCTTTGTGATTTGGGTCGGCGT
GCGCGTGTTTCTCGTGCTTGTCGTCTTCGCTACTACTTCCTCACTCACTC
ACTATTCTCTCGTACTGTAATTGTCCACCTCTTTCGAAACATATTTGCCG
AGTACTCTCTCACTCTTCATTCTCTCGAACGATGCTTGTCCACCACTTAC
CAACAGGCTAGCGGATCCCAACTCCACACAAAACGTCCTCTGGTGCCGCG
GGGGCAAGGCACTGGAAGCCTACGAGACTCTGCGCTCCCATATATTTTCT
TGGCACGACTCGGGTGTGTTTACGGCGTGCAGACATTGCAATCGCGTGTA
TCAGAACACGAGGGCCTTTTTGAGTCACGGGTAAGGGAGAGAGGGAGGGA
GGGAGGGAGGGAGAGAGGGAGAATAGGTAATTCGTGTGAGATTTTTTTTT
TATCAAAGCGGGCCAGCGTGATGTGACCTATCCCTCTCCCTCCCTCTTTC
CCCTCCTCCTGCTTCCTTTTCCCTACTGCTGTTCACGCAAAACCCTGCCG
GTTCGCCTGACGACCCCCCAGGAGATGATATTGCATCATTGCGTCGTGCT
CTCACACCACGCCTTTCTCTTTCTCACTCTCACCCCTCTCCGTCTTGCAC
TTTTTTCCTCCTTTCCCTCCCTCCAGATGCGTCAAGAAGAGCCCCGCTGG
CCTCCTAGACGATCCTTACAAGGATGATACTGCTGTTGCGTCGTGCTCGC
AATCCATGTGGTCCTTCCTAGAGGTGTCACCTGATTTCGCCCAGCTGTTT
TACCAGTTGCAGTCGCTTCCGACGGACAGAAAGGAGGAGGTTTTCGATCG
AGTGAGTAAGAGGTTGAAGTCCACCACCAATCTCTAGGGGGGCGGGGGAG
GAAGGGAGGGAGGGAGGAAGACGAGGAAGGGTTGTGTCGAAAGCTTTCAC
GAGAGGCGGAGCTGCAGCCGCTGCCGAA

Coding sequence (CDS) from alignment at scaffold_12:461535..464812+

>mRNA_5100 ID=mRNA_5100|Name=jgi.p|Nanoce1779_2|591387|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at scaffold_12:461535..464812+ (Nannochloropsis oceanica)
ATGGCCTCGACCGCAGCCACTTCCGTCGCTGGAGCGGCGCCTGCTGACGC
CCCTCAAGCTCGCGACAAGTACAAGGGGAAGGGAGCCATGCCCCTCGACT
CTGTCTTGGAGGGCTTGCTCTCTCTCCGTTCCCCCGCCATGCCGTTATCC
TCTCCAGCCGCCACCGCCGGCACGACATTCCCGAGTAGCTCCCCTGCGGC
AGGCCCACCAGTTGGTGCAGCAGCAGCTTGCGCAGCCACCGACAAGGCCG
CCGTCTCCTGCCCTCTGCACCCCTGCCCTTCAGCTCTCCCAGCCCCTGCT
GCTCACTTCATGGACTGCGGTCAAGGCCGTCATCAACCAATGGAAGTTTC
CCTCCCTCCTTCTCTGTCTCCTTCCCTCCTTTCACCGTCCCCGTTTCCTC
CCCGTCATCACCCTTGCGCTCCTACCTTCGGGTCACGCGACATGTCCTTC
TTCCCCCCCCTCCACCAAGGCCCCACCATGTCCCCCTCCTCTGTCTCGCC
CGACCAGAAAGTCAAGCATGCCCCCGCCACTATTGGATCCAACACAGTCC
CTTATTCTCCCCCTCTTCCTCCTCTCCTTCCCCATCTTCCTCCTTTCGGC
CAGATGGCGGCCGCTGCCACTGTAACCTCCGCAGCCGCCGTCGTTGCGCA
TGCCGCGCACGCAGCAGCGGGTGCCGCTGAGAGCAACAAGATCCAAGCGG
AGAAGCTGCTGGTGTCCATCCCTACTGACTCGCTCGACACTTCCTCAATC
ATTGCTTCCGACCCTGCAGACGCCCATCGGCTCGCCTTGACGGCCGCCAA
TGCTGCTTCTGTCGCCAGCCACGGGGAGGTAGGAGAGGAAGAGGGAGATG
AGGGGCTGCGTCTCATCATCAACCAGCAGGTCGCATTAGTCCCTTCCCAG
ACGAGTGCGGTCTTGAGTCAAAATCAGGAGTCGAGGATAAAAAATTTAGA
AAAAATTCCTCCAGAAGCCGTCCGGGCCTTGGAGGCCACGTTGTCTGCTA
TTCCGGCGTGGGGGGTGAGAATCACCAAGGAGAAGCTGGAGGTGTTGGGG
GCGGTCGTGTTGGGTTCGCCGGTATTGATGGAGGGGGAGAAGAGCGATGG
GCGGGTGGACTACAGCCCGAAGAATTACCACATTGAGTGCAAGCGTTGCG
CCAAGAGGTTCTTGGGAAAGAATGCGTTGAGGTAG

Synonyms

Publications