jgi.p|Nanoce1779_2|577536, mRNA_510 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577536
Unique Name	mRNA_510
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2406
Alignment location	scaffold_3:1234509..1236914 -

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Properties


Property Name	Value
TranscriptId	577622
Track	FilteredModels2
ProteinId	577536

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1234509..1236914 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577536	gene_510	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577536	mRNA_510-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_510	CDS_510	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1234509..1236914-
coding sequence from alignment at scaffold_3:1234509..1236914-

mRNA sequence

>mRNA_510 ID=mRNA_510|Name=jgi.p|Nanoce1779_2|577536|organism=Nannochloropsis oceanica|type=mRNA|length=2406bp
ACAGAGCAACGTGGATTTCATGTTTTCACGCTGCCGCCGGGCGGGAGGCC
GAGGGGCCACTCCAAGAAGCATGCGGTTGCTCGTCAGTTTGTGCCGGCTT
GTACTGTTAGTGGTCAGTGCCGAGGCGTTCAGGGGGCTGATACGGCCATC
GCCGTCCTCGTCATCCTCCTCCGCTCCCCGTGTTCTAGCCACGGCCACCG
CGGCCCCTTCCTCCTCCTTCTCCCCTCGCCTACTCGCCGAGCACCTCTCA
TGGCCACCCGCGTCAAGAAACAGTCGGACGCGCATGCCAAGCATGGTCAT
GCCTAGCGTTGCAAAGGTTCTGACCGCTGTGCCTCGTTTCCTGGGCCGGA
AATTGATGGATGGAGGCGACGCTATATACCTCAAGAAATGCCTCTTCCTC
CCTCCAGGGAGCAGTAACGTTGCGGCTGCAATTACCAGCAGTACCAGCGC
AATTGGCGGCACCAGCACAAGAGATGACAGCAAGGAAAACGCTTCACAAG
GACAAACATCGCCCTTCCCCCCTCCCCCCAACACTGACATGGTCCTAATT
TTCTACCCTGGCATCGGACTCGGTCCCTCCTCCTATCGCGACACCGCCCT
GGCCATTCAAGACGCCCTTGCGTCAAATTACGACATTCAAGCCTATGTGG
TCATCGCAAAGTTTATGAACAACCTGGGCTATCTTCCCCAAGAGCCCCAG
CGCCGCCTCGCGTCCATTCTAGCCGAGCTGGGCGAAAGAGGCATCTCTCC
TCGGGCCCCTGTTGCGGTTGTCGGTCATTCAGCCGGGGCGTTTCTGGCAT
ATGACGCCGCGTTAACCCGTGCACAGGCCTTTGTTCATTTAGGCTCAACG
CTAAATAGCCGAGGAGTACTGCCGTGGACGCCACGAAGCGTGGTGGAGTA
CCCCAAGCCGATTTTGCAGTTGCTGGGGGAGATGGATGGATATATCAGGT
TCACTGGTGGGGCGCTTGAGTATGCGGAGGTGGAGGGGTTGATGGCGAAG
AAAGGATTCGAGGACGTGTTGCTTGAGAAGCCGGTTGTGGTGTTGCCTGG
GGTGAGTCATGAGCAGTTTGGGGACGGGCAGCAGAGTAAAATGGCTCGTA
TGAGTGGGAGGAGGGATTTACCGCCTTATGTGTCATTGCAAGAGGCGCAT
CGAATGACGGGGAAGATCGTGGGGGCGTTTCTGGCGTTGCATTTATTTCC
TGAAAACGGGCAGGCGAGAGTAGGCGGAGCGAATACCGTGCGGTCGGCGT
TTGAGGCGACAGGACGGATGGTACGGCCATACTTGAATGAAATGACCGAG
CAGGCGGAGGATGATTTTATCAGGTGGGCTCAAGCGGAGGTGGCGTCCGT
GGAGGGAGTGGGAAGGAATAGCGTGCGTGCCTGCGTGTTCCACACGGAGC
AGGAGTTCGTGTATTCGAAGCCGACCTTGGACGGGGAGAGTGAGTATTTA
CAGGTGTGCGTGCGGAAGCAGCAGCAGACGAACACGATCAAGATCGGGTT
CACGAAACAAATTTCCCCGGCGTTTGGACTGAAAATGAAGAGACAAGAAG
CGGTGGTGCAGGTGTTGAGGCGGTACCCATCGAAAAAGGCCCCCACAGCC
GCCGAATTGAATCGGAGGACGTTTCAAAAGGCGCTGGAGAGGGTGAGTGA
GGAGGCGAGGAGGAGGTACGATAGGTACGGGAGGAAGCTGGAGTTTATGG
CAGACGATGAGATCACGGCAGAGAGGGGTGGGGGGCCTGCGTGGGTGGCG
GCGCCATTGGAGGTGAAGCCACGGGTGGAGGATCCGATGAGGGTGACCGT
GCGAGCCCCGGTGCTGTACACACCCATTGACACGCTGCCGAGGTTTGCAG
GCATGTGTTATATGAAGCTCTTGACGCCCGCACAAGCCATTGAGTGGATC
TGTCATGATGCTTTTATCCCTTGGGATAGGAAGGTTTGATGTGTTTTTCG
CTTGTTCGAGTTTTCATCTTCCCCCCCCTACTTCCCTCCCCCCTTCCTGC
CCTCCCTCCCTTTTCTCCTCCCAAATGAATGTGTAAATGTACCATAGACA
AAGAACAACAAAGAGGCGACATGCAATTATCAATCAATCAACTAGTTAGG
GACGATCGCACCCAATAAGATCCCATAAGAAGAAAGAAACAAAGGAGCGA
AACAAAAGATGTGCTCGTCTTCTTCGAAATAAAATGTTTTCAAATACTCA
AAAGTGGAGCCTCCAGGTATCAAAATCTCACGGTACATTTTAATTGATAA
TGTAAGCGACTGTATATGCGTGCCCATTATTGGAGAAGGAAGAGGAGAAT
GAGAAGGAAGCGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGTAGGAGCT
GCTGCAACATCAGCGGCAGGAGCAACAGCATCAGCGGCAGCAGCTTACCA
AGCCCA

protein sequence of jgi.p|Nanoce1779_2|577536

>mRNA_510-protein ID=mRNA_510-protein|Name=jgi.p|Nanoce1779_2|577536|organism=Nannochloropsis oceanica|type=polypeptide|length=640bp
MFSRCRRAGGRGATPRSMRLLVSLCRLVLLVVSAEAFRGLIRPSPSSSSS
SAPRVLATATAAPSSSFSPRLLAEHLSWPPASRNSRTRMPSMVMPSVAKV
LTAVPRFLGRKLMDGGDAIYLKKCLFLPPGSSNVAAAITSSTSAIGGTST
RDDSKENASQGQTSPFPPPPNTDMVLIFYPGIGLGPSSYRDTALAIQDAL
ASNYDIQAYVVIAKFMNNLGYLPQEPQRRLASILAELGERGISPRAPVAV
VGHSAGAFLAYDAALTRAQAFVHLGSTLNSRGVLPWTPRSVVEYPKPILQ
LLGEMDGYIRFTGGALEYAEVEGLMAKKGFEDVLLEKPVVVLPGVSHEQF
GDGQQSKMARMSGRRDLPPYVSLQEAHRMTGKIVGAFLALHLFPENGQAR
VGGANTVRSAFEATGRMVRPYLNEMTEQAEDDFIRWAQAEVASVEGVGRN
SVRACVFHTEQEFVYSKPTLDGESEYLQVCVRKQQQTNTIKIGFTKQISP
AFGLKMKRQEAVVQVLRRYPSKKAPTAAELNRRTFQKALERVSEEARRRY
DRYGRKLEFMADDEITAERGGGPAWVAAPLEVKPRVEDPMRVTVRAPVLY
TPIDTLPRFAGMCYMKLLTPAQAIEWICHDAFIPWDRKV*

mRNA from alignment at scaffold_3:1234509..1236914-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_510 ID=mRNA_510|Name=jgi.p|Nanoce1779_2|577536|organism=Nannochloropsis oceanica|type=mRNA|length=2406bp|location=Sequence derived from alignment at scaffold_3:1234509..1236914- (Nannochloropsis oceanica)
ACAGAGCAACGTGGATTTCATGTTTTCACGCTGCCGCCGGGCGGGAGGCC
GAGGGGCCACTCCAAGAAGCATGCGGTTGCTCGTCAGTTTGTGCCGGCTT
GTACTGTTAGTGGTCAGTGCCGAGGCGTTCAGGGGGCTGATACGGCCATC
GCCGTCCTCGTCATCCTCCTCCGCTCCCCGTGTTCTAGCCACGGCCACCG
CGGCCCCTTCCTCCTCCTTCTCCCCTCGCCTACTCGCCGAGCACCTCTCA
TGGCCACCCGCGTCAAGAAACAGTCGGACGCGCATGCCAAGCATGGTCAT
GCCTAGCGTTGCAAAGGTTCTGACCGCTGTGCCTCGTTTCCTGGGCCGGA
AATTGATGGATGGAGGCGACGCTATATACCTCAAGAAATGCCTCTTCCTC
CCTCCAGGGAGCAGTAACGTTGCGGCTGCAATTACCAGCAGTACCAGCGC
AATTGGCGGCACCAGCACAAGAGATGACAGCAAGGAAAACGCTTCACAAG
GACAAACATCGCCCTTCCCCCCTCCCCCCAACACTGACATGGTCCTAATT
TTCTACCCTGGCATCGGACTCGGTCCCTCCTCCTATCGCGACACCGCCCT
GGCCATTCAAGACGCCCTTGCGTCAAATTACGACATTCAAGCCTATGTGG
TCATCGCAAAGTTTATGAACAACCTGGGCTATCTTCCCCAAGAGCCCCAG
CGCCGCCTCGCGTCCATTCTAGCCGAGCTGGGCGAAAGAGGCATCTCTCC
TCGGGCCCCTGTTGCGGTTGTCGGTCATTCAGCCGGGGCGTTTCTGGCAT
ATGACGCCGCGTTAACCCGTGCACAGGCCTTTGTTCATTTAGGCTCAACG
CTAAATAGCCGAGGAGTACTGCCGTGGACGCCACGAAGCGTGGTGGAGTA
CCCCAAGCCGATTTTGCAGTTGCTGGGGGAGATGGATGGATATATCAGGT
TCACTGGTGGGGCGCTTGAGTATGCGGAGGTGGAGGGGTTGATGGCGAAG
AAAGGATTCGAGGACGTGTTGCTTGAGAAGCCGGTTGTGGTGTTGCCTGG
GGTGAGTCATGAGCAGTTTGGGGACGGGCAGCAGAGTAAAATGGCTCGTA
TGAGTGGGAGGAGGGATTTACCGCCTTATGTGTCATTGCAAGAGGCGCAT
CGAATGACGGGGAAGATCGTGGGGGCGTTTCTGGCGTTGCATTTATTTCC
TGAAAACGGGCAGGCGAGAGTAGGCGGAGCGAATACCGTGCGGTCGGCGT
TTGAGGCGACAGGACGGATGGTACGGCCATACTTGAATGAAATGACCGAG
CAGGCGGAGGATGATTTTATCAGGTGGGCTCAAGCGGAGGTGGCGTCCGT
GGAGGGAGTGGGAAGGAATAGCGTGCGTGCCTGCGTGTTCCACACGGAGC
AGGAGTTCGTGTATTCGAAGCCGACCTTGGACGGGGAGAGTGAGTATTTA
CAGGTGTGCGTGCGGAAGCAGCAGCAGACGAACACGATCAAGATCGGGTT
CACGAAACAAATTTCCCCGGCGTTTGGACTGAAAATGAAGAGACAAGAAG
CGGTGGTGCAGGTGTTGAGGCGGTACCCATCGAAAAAGGCCCCCACAGCC
GCCGAATTGAATCGGAGGACGTTTCAAAAGGCGCTGGAGAGGGTGAGTGA
GGAGGCGAGGAGGAGGTACGATAGGTACGGGAGGAAGCTGGAGTTTATGG
CAGACGATGAGATCACGGCAGAGAGGGGTGGGGGGCCTGCGTGGGTGGCG
GCGCCATTGGAGGTGAAGCCACGGGTGGAGGATCCGATGAGGGTGACCGT
GCGAGCCCCGGTGCTGTACACACCCATTGACACGCTGCCGAGGTTTGCAG
GCATGTGTTATATGAAGCTCTTGACGCCCGCACAAGCCATTGAGTGGATC
TGTCATGATGCTTTTATCCCTTGGGATAGGAAGGTTTGATGTGTTTTTCG
CTTGTTCGAGTTTTCATCTTCCCCCCCCTACTTCCCTCCCCCCTTCCTGC
CCTCCCTCCCTTTTCTCCTCCCAAATGAATGTGTAAATGTACCATAGACA
AAGAACAACAAAGAGGCGACATGCAATTATCAATCAATCAACTAGTTAGG
GACGATCGCACCCAATAAGATCCCATAAGAAGAAAGAAACAAAGGAGCGA
AACAAAAGATGTGCTCGTCTTCTTCGAAATAAAATGTTTTCAAATACTCA
AAAGTGGAGCCTCCAGGTATCAAAATCTCACGGTACATTTTAATTGATAA
TGTAAGCGACTGTATATGCGTGCCCATTATTGGAGAAGGAAGAGGAGAAT
GAGAAGGAAGCGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGTAGGAGCT
GCTGCAACATCAGCGGCAGGAGCAACAGCATCAGCGGCAGCAGCTTACCA
AGCCCA

Coding sequence (CDS) from alignment at scaffold_3:1234509..1236914-

>mRNA_510 ID=mRNA_510|Name=jgi.p|Nanoce1779_2|577536|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_3:1234509..1236914- (Nannochloropsis oceanica)
ATGTTTTCACGCTGCCGCCGGGCGGGAGGCCGAGGGGCCACTCCAAGAAG
CATGCGGTTGCTCGTCAGTTTGTGCCGGCTTGTACTGTTAGTGGTCAGTG
CCGAGGCGTTCAGGGGGCTGATACGGCCATCGCCGTCCTCGTCATCCTCC
TCCGCTCCCCGTGTTCTAGCCACGGCCACCGCGGCCCCTTCCTCCTCCTT
CTCCCCTCGCCTACTCGCCGAGCACCTCTCATGGCCACCCGCGTCAAGAA
ACAGTCGGACGCGCATGCCAAGCATGGTCATGCCTAGCGTTGCAAAGGTT
CTGACCGCTGTGCCTCGTTTCCTGGGCCGGAAATTGATGGATGGAGGCGA
CGCTATATACCTCAAGAAATGCCTCTTCCTCCCTCCAGGGAGCAGTAACG
TTGCGGCTGCAATTACCAGCAGTACCAGCGCAATTGGCGGCACCAGCACA
AGAGATGACAGCAAGGAAAACGCTTCACAAGGACAAACATCGCCCTTCCC
CCCTCCCCCCAACACTGACATGGTCCTAATTTTCTACCCTGGCATCGGAC
TCGGTCCCTCCTCCTATCGCGACACCGCCCTGGCCATTCAAGACGCCCTT
GCGTCAAATTACGACATTCAAGCCTATGTGGTCATCGCAAAGTTTATGAA
CAACCTGGGCTATCTTCCCCAAGAGCCCCAGCGCCGCCTCGCGTCCATTC
TAGCCGAGCTGGGCGAAAGAGGCATCTCTCCTCGGGCCCCTGTTGCGGTT
GTCGGTCATTCAGCCGGGGCGTTTCTGGCATATGACGCCGCGTTAACCCG
TGCACAGGCCTTTGTTCATTTAGGCTCAACGCTAAATAGCCGAGGAGTAC
TGCCGTGGACGCCACGAAGCGTGGTGGAGTACCCCAAGCCGATTTTGCAG
TTGCTGGGGGAGATGGATGGATATATCAGGTTCACTGGTGGGGCGCTTGA
GTATGCGGAGGTGGAGGGGTTGATGGCGAAGAAAGGATTCGAGGACGTGT
TGCTTGAGAAGCCGGTTGTGGTGTTGCCTGGGGTGAGTCATGAGCAGTTT
GGGGACGGGCAGCAGAGTAAAATGGCTCGTATGAGTGGGAGGAGGGATTT
ACCGCCTTATGTGTCATTGCAAGAGGCGCATCGAATGACGGGGAAGATCG
TGGGGGCGTTTCTGGCGTTGCATTTATTTCCTGAAAACGGGCAGGCGAGA
GTAGGCGGAGCGAATACCGTGCGGTCGGCGTTTGAGGCGACAGGACGGAT
GGTACGGCCATACTTGAATGAAATGACCGAGCAGGCGGAGGATGATTTTA
TCAGGTGGGCTCAAGCGGAGGTGGCGTCCGTGGAGGGAGTGGGAAGGAAT
AGCGTGCGTGCCTGCGTGTTCCACACGGAGCAGGAGTTCGTGTATTCGAA
GCCGACCTTGGACGGGGAGAGTGAGTATTTACAGGTGTGCGTGCGGAAGC
AGCAGCAGACGAACACGATCAAGATCGGGTTCACGAAACAAATTTCCCCG
GCGTTTGGACTGAAAATGAAGAGACAAGAAGCGGTGGTGCAGGTGTTGAG
GCGGTACCCATCGAAAAAGGCCCCCACAGCCGCCGAATTGAATCGGAGGA
CGTTTCAAAAGGCGCTGGAGAGGGTGAGTGAGGAGGCGAGGAGGAGGTAC
GATAGGTACGGGAGGAAGCTGGAGTTTATGGCAGACGATGAGATCACGGC
AGAGAGGGGTGGGGGGCCTGCGTGGGTGGCGGCGCCATTGGAGGTGAAGC
CACGGGTGGAGGATCCGATGAGGGTGACCGTGCGAGCCCCGGTGCTGTAC
ACACCCATTGACACGCTGCCGAGGTTTGCAGGCATGTGTTATATGAAGCT
CTTGACGCCCGCACAAGCCATTGAGTGGATCTGTCATGATGCTTTTATCC
CTTGGGATAGGAAGGTTTGA

Synonyms

Publications