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Properties
| Property Name | Value |
|---|
| TranscriptId | 591454 |
| Track | FilteredModels2 |
| ProteinId | 591368 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:443445..445706 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5096 ID=mRNA_5096|Name=jgi.p|Nanoce1779_2|591368|organism=Nannochloropsis oceanica|type=mRNA|length=2041bp
ACAGACACGTCGTCTGTCGCTGCCGATGCTTCTTCGCCTTCGCAGGGAAC
GACGTCCTCAACTTGCCCCTGTCCCCAAGTCCAGGATAAGACAGCCGGGG
ATAACACTGTGCATGGGTATACCCATGCTGCTTGGAATGGTACTGCTGTG
CTCTTTCACTGGCGCGGTGGTCATGGACCAAAGCAACACGGTGGAGATTG
ACGGCCACTACGAGAATCAGACGCTTACACGCCTGGCCTTTGGCTCGTGC
AACAAACAGTGGCGCACGAACCTTTTATGGAACCACATCGTTGATTTCCG
GCCCCAAGCTTATCTCTGGTTAGGCGATGCAGTTTATGTCAAGGAAAAAG
AGGGCGACAATGAAGCAAACCTTCGCAAAGCCTACGCCCGCCAGTTAAAA
AACGAGGGTTACCAACGATTATTACACACGGGGGCTGTCATTGAGGGTGT
GTATGACGACCATGACATGTCTACGAATGATGGGCATCGTGTGAACTACA
CCCCCCAACGGCAAGCGGCCTACCTCGACTTCCTCGGCCACATCCCCCCT
TCCTCCCCCCGCCGTTCGCGCCTCGGCCTCTTCTCCTCCCATGTCTTCGG
GGTCGCGCCACAACAAGTCAAGATTATTTTCATGGACGTTCGCTCGCTGA
GCGACAATCCCGCCCTGAATCTCCCTGCGTGGATCGCTGACTTCATGTGG
CCGGTCAAGCCGTATTTGCTTGCCCTGACCCGGTGGACTGCCGTCTTGCT
TGGAGTCACCAAGAGGTTTCAAGGCGACATGCTGGGGGCCGAGCAGTGGG
CTTGGCTAGAAGGGCAGTTGGAAAAATCGGAGGCTTCCATGCATATACTC
GTCTCGTCCGTGCAGCTGTTATCGGTGAACCCGATTGTGGAAGGGTGGGG
ACATTACCCTGCAGCCCAAGCACGCCTGTTGGCCTTGTTGCGGAAGTACC
GACCGAGAGGGTTGGTGGTCCTGTCGGGGGATGTACATTTTTCTGAGCTA
CTGGTGACGCAGCCGGAGGAGTGGGTGGATGAAGAGGAAGGGAGGGAGGC
TTTGGAAGTGACGAGCAGTGGCATGACGCACACGTGTTTTGCGACGACTA
TGGGGATGTGTGAGATGGCCGTGCAGAGGTATGATCGACATCGGTTGAGT
CCATCGAGTGTTTACGGAGGCTTAAATTATGGCACGGTTGAAGTGGACTG
GGAGAAACAAGAAGCGTGGGTGGATGTGAGGAACAAAAGGGGGGAATCTG
TATTGCAGACGCGGAGGAGGTTGGACAGGGATAGTCCTGGGGCGGCGTTG
GGAGAGCCGTGGTCCATCAACAATAATAATGATTTGTACTTCTTTATTTT
GGCCTTGATGTCCATTGCACTGGTGACGTATGCTGTGTTCTGGGTGGTGC
GGGGGTTGGTTAGGTGGAAGGGGCGGCGTTTTGGGACGATGGTGGGAGGC
GCAGGGGGCAATAAGGCGAATAAGTACTCGAAGAAAGAAGCATAAGGGGG
AAGAAGGGAAGGAAAGAGGGAGAGAGATAGGAGCAAGGGCTTGTAGTGAC
AGAGCAGGACTTGTACAGCAACAGCAGCAGCCAGCGTGGCAGGGGCAGAC
AGTCAGTGTGTGTGAAAGTATGTCCGTGCGTGTGTGCGGCAGTATGGAAA
AAAACAAAGCACCACGTGGGGAAAACACATGTAGGGTAGTGCGATCGAAA
AGAAAGGAACCTAAGCATTATCAATCAAATGTTTCTCTTGCATTGTGAGA
TGGTATGTCATCGCGCGATTCGTGCTGCTGGGATAGAGCTGGGTTCGCGT
AGCTTTTTCGAAGTACCTCCCAAAGTCCGAGTCTGCCGCGCGTGCTGGTG
TCTGCATTCCATAAATCTTTTTGTCCTTGCTTTCCTTTTCACTCCCTTCT
TTTCCCTCTACAACCATTTTTTGATGACCACGACAAGCTTTCCACGGTGT
CGTAATGCAGGGATGCCACACACTTGACTCACAATAACGAGGAACACGAC
ACCTGGTGTGCCATATTCAAACGGGCCGTTTGAGAGCTTCC back to topprotein sequence of jgi.p|Nanoce1779_2|591368 >mRNA_5096-protein ID=mRNA_5096-protein|Name=jgi.p|Nanoce1779_2|591368|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MLLRLRRERRPQLAPVPKSRIRQPGITLCMGIPMLLGMVLLCSFTGAVVM
DQSNTVEIDGHYENQTLTRLAFGSCNKQWRTNLLWNHIVDFRPQAYLWLG
DAVYVKEKEGDNEANLRKAYARQLKNEGYQRLLHTGAVIEGVYDDHDMST
NDGHRVNYTPQRQAAYLDFLGHIPPSSPRRSRLGLFSSHVFGVAPQQVKI
IFMDVRSLSDNPALNLPAWIADFMWPVKPYLLALTRWTAVLLGVTKRFQG
DMLGAEQWAWLEGQLEKSEASMHILVSSVQLLSVNPIVEGWGHYPAAQAR
LLALLRKYRPRGLVVLSGDVHFSELLVTQPEEWVDEEEGREALEVTSSGM
THTCFATTMGMCEMAVQRYDRHRLSPSSVYGGLNYGTVEVDWEKQEAWVD
VRNKRGESVLQTRRRLDRDSPGAALGEPWSINNNNDLYFFILALMSIALV
TYAVFWVVRGLVRWKGRRFGTMVGGAGGNKANKYSKKEA* back to topmRNA from alignment at scaffold_12:443445..445706- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5096 ID=mRNA_5096|Name=jgi.p|Nanoce1779_2|591368|organism=Nannochloropsis oceanica|type=mRNA|length=2262bp|location=Sequence derived from alignment at scaffold_12:443445..445706- (Nannochloropsis oceanica)
ACAGACACGTCGTCTGTCGCTGCCGATGCTTCTTCGCCTTCGCAGGGAAC
GACGTCCTCAACTTGCCCCTGTCCCCAAGTCCAGGATAAGACAGCCGGGG
ATAACACTGTGCATGGGTATACCCATGCTGCTTGGAATGGTACTGCTGTG
CTCTTTCACTGGCGCGGTGGTCATGGACCAAAGCAACACGGTGGAGATTG
ACGGCCACTACGAGAATCAGACGCTTACACGCCTGGCCTTTGGCTCGTGC
AACAAACAGGTGTGTTTATCTGCATGAGCGTATGTCCTTTTCTCCATCTT
TCTCATCCTCTCTCCTTACCCATCCGTCCTCCCCCTCTTTCAAAAAATCA
GTGGCGCACGAACCTTTTATGGAACCACATCGTTGATTTCCGGCCCCAAG
CTTATCTCTGGTTAGGCGATGCAGTTTATGTCAAGGAAAAAGAGGGCGAC
AATGAAGCAAACCTTCGCAAAGCCTACGCCCGCCAGTTAAAAAACGAGGG
TTACCAACGATTATTACACACGGGGGCTGTCATTGAGGGTGTGTATGACG
ACCATGACATGTCTACGAATGATGGGCATCGTGTGGTAAGTGTGGTCCTA
GGGGAGGCCGGCGAAGTGTCAATTGCTGTCCTTCTTTGACTTCTTCACCC
TCGCACCATTCACCACTCAACGTATCCCTCCTCCATCGCCCTGGAAACGT
AACGTAACATACAGAACTACACCCCCCAACGGCAAGCGGCCTACCTCGAC
TTCCTCGGCCACATCCCCCCTTCCTCCCCCCGCCGTTCGCGCCTCGGCCT
CTTCTCCTCCCATGTCTTCGGGGTCGCGCCACAACAAGTCAAGATTATTT
TCATGGACGTTCGCTCGCTGAGCGACAATCCCGCCCTGAATCTCCCTGCG
TGGATCGCTGACTTCATGTGGCCGGTCAAGCCGTATTTGCTTGCCCTGAC
CCGGTGGACTGCCGTCTTGCTTGGAGTCACCAAGAGGTTTCAAGGCGACA
TGCTGGGGGCCGAGCAGTGGGCTTGGCTAGAAGGGCAGTTGGAAAAATCG
GAGGCTTCCATGCATATACTCGTCTCGTCCGTGCAGCTGTTATCGGTGAA
CCCGATTGTGGAAGGGTGGGGACATTACCCTGCAGCCCAAGCACGCCTGT
TGGCCTTGTTGCGGAAGTACCGACCGAGAGGGTTGGTGGTCCTGTCGGGG
GATGTACATTTTTCTGAGCTACTGGTGACGCAGCCGGAGGAGTGGGTGGA
TGAAGAGGAAGGGAGGGAGGCTTTGGAAGTGACGAGCAGTGGCATGACGC
ACACGTGTTTTGCGACGACTATGGGGATGTGTGAGATGGCCGTGCAGAGG
TATGATCGACATCGGTTGAGTCCATCGAGTGTTTACGGAGGCTTAAATTA
TGGCACGGTTGAAGTGGACTGGGAGAAACAAGAAGCGTGGGTGGATGTGA
GGAACAAAAGGGGGGAATCTGTATTGCAGACGCGGAGGAGGTTGGACAGG
GATAGTCCTGGGGCGGCGTTGGGAGAGCCGTGGTCCATCAACAATAATAA
TGATTTGTACTTCTTTATTTTGGCCTTGATGTCCATTGCACTGGTGACGT
ATGCTGTGTTCTGGGTGGTGCGGGGGTTGGTTAGGTGGAAGGGGCGGCGT
TTTGGGACGATGGTGGGAGGCGCAGGGGGCAATAAGGCGAATAAGTACTC
GAAGAAAGAAGCATAAGGGGGAAGAAGGGAAGGAAAGAGGGAGAGAGATA
GGAGCAAGGGCTTGTAGTGACAGAGCAGGACTTGTACAGCAACAGCAGCA
GCCAGCGTGGCAGGGGCAGACAGTCAGTGTGTGTGAAAGTATGTCCGTGC
GTGTGTGCGGCAGTATGGAAAAAAACAAAGCACCACGTGGGGAAAACACA
TGTAGGGTAGTGCGATCGAAAAGAAAGGAACCTAAGCATTATCAATCAAA
TGTTTCTCTTGCATTGTGAGATGGTATGTCATCGCGCGATTCGTGCTGCT
GGGATAGAGCTGGGTTCGCGTAGCTTTTTCGAAGTACCTCCCAAAGTCCG
AGTCTGCCGCGCGTGCTGGTGTCTGCATTCCATAAATCTTTTTGTCCTTG
CTTTCCTTTTCACTCCCTTCTTTTCCCTCTACAACCATTTTTTGATGACC
ACGACAAGCTTTCCACGGTGTCGTAATGCAGGGATGCCACACACTTGACT
CACAATAACGAGGAACACGACACCTGGTGTGCCATATTCAAACGGGCCGT
TTGAGAGCTTCC back to topCoding sequence (CDS) from alignment at scaffold_12:443445..445706- >mRNA_5096 ID=mRNA_5096|Name=jgi.p|Nanoce1779_2|591368|organism=Nannochloropsis oceanica|type=CDS|length=4410bp|location=Sequence derived from alignment at scaffold_12:443445..445706- (Nannochloropsis oceanica)
AACTACACCCCCCAACGGCAAGCGGCCTACCTCGACTTCCTCGGCCACAT
CCCCCCTTCCTCCCCCCGCCGTTCGCGCCTCGGCCTCTTCTCCTCCCATG
TCTTCGGGGTCGCGCCACAACAAGTCAAGATTATTTTCATGGACGTTCGC
TCGCTGAGCGACAATCCCGCCCTGAATCTCCCTGCGTGGATCGCTGACTT
CATGTGGCCGGTCAAGCCGTATTTGCTTGCCCTGACCCGGTGGACTGCCG
TCTTGCTTGGAGTCACCAAGAGGTTTCAAGGCGACATGCTGGGGGCCGAG
CAGTGGGCTTGGCTAGAAGGGCAGTTGGAAAAATCGGAGGCTTCCATGCA
TATACTCGTCTCGTCCGTGCAGCTGTTATCGGTGAACCCGATTGTGGAAG
GGTGGGGACATTACCCTGCAGCCCAAGCACGCCTGTTGGCCTTGTTGCGG
AAGTACCGACCGAGAGGGTTGGTGGTCCTGTCGGGGGATGTACATTTTTC
TGAGCTACTGGTGACGCAGCCGGAGGAGTGGGTGGATGAAGAGGAAGGGA
GGGAGGCTTTGGAAGTGACGAGCAGTGGCATGACGCACACGTGTTTTGCG
ACGACTATGGGGATGTGTGAGATGGCCGTGCAGAGGTATGATCGACATCG
GTTGAGTCCATCGAGTGTTTACGGAGGCTTAAATTATGGCACGGTTGAAG
TGGACTGGGAGAAACAAGAAGCGTGGGTGGATGTGAGGAACAAAAGGGGG
GAATCTGTATTGCAGACGCGGAGGAGGTTGGACAGGGATAGTCCTGGGGC
GGCGTTGGGAGAGCCGTGGTCCATCAACAATAATAATGATTTGTACTTCT
TTATTTTGGCCTTGATGTCCATTGCACTGGTGACGTATGCTGTGTTCTGG
GTGGTGCGGGGGTTGGTTAGGTGGAAGGGGCGGCGTTTTGGGACGATGGT
GGGAGGCGCAGGGGGCAATAAGGCGAATAAGTACTCGAAGAAAGAAGCAT
AATGGCGCACGAACCTTTTATGGAACCACATCGTTGATTTCCGGCCCCAA
GCTTATCTCTGGTTAGGCGATGCAGTTTATGTCAAGGAAAAAGAGGGCGA
CAATGAAGCAAACCTTCGCAAAGCCTACGCCCGCCAGTTAAAAAACGAGG
GTTACCAACGATTATTACACACGGGGGCTGTCATTGAGGGTGTGTATGAC
GACCATGACATGTCTACGAATGATGGGCATCGTGTGATGCTTCTTCGCCT
TCGCAGGGAACGACGTCCTCAACTTGCCCCTGTCCCCAAGTCCAGGATAA
GACAGCCGGGGATAACACTGTGCATGGGTATACCCATGCTGCTTGGAATG
GTACTGCTGTGCTCTTTCACTGGCGCGGTGGTCATGGACCAAAGCAACAC
GGTGGAGATTGACGGCCACTACGAGAATCAGACGCTTACACGCCTGGCCT
TTGGCTCGTGCAACAAACAGAACTACACCCCCCAACGGCAAGCGGCCTAC
CTCGACTTCCTCGGCCACATCCCCCCTTCCTCCCCCCGCCGTTCGCGCCT
CGGCCTCTTCTCCTCCCATGTCTTCGGGGTCGCGCCACAACAAGTCAAGA
TTATTTTCATGGACGTTCGCTCGCTGAGCGACAATCCCGCCCTGAATCTC
CCTGCGTGGATCGCTGACTTCATGTGGCCGGTCAAGCCGTATTTGCTTGC
CCTGACCCGGTGGACTGCCGTCTTGCTTGGAGTCACCAAGAGGTTTCAAG
GCGACATGCTGGGGGCCGAGCAGTGGGCTTGGCTAGAAGGGCAGTTGGAA
AAATCGGAGGCTTCCATGCATATACTCGTCTCGTCCGTGCAGCTGTTATC
GGTGAACCCGATTGTGGAAGGGTGGGGACATTACCCTGCAGCCCAAGCAC
GCCTGTTGGCCTTGTTGCGGAAGTACCGACCGAGAGGGTTGGTGGTCCTG
TCGGGGGATGTACATTTTTCTGAGCTACTGGTGACGCAGCCGGAGGAGTG
GGTGGATGAAGAGGAAGGGAGGGAGGCTTTGGAAGTGACGAGCAGTGGCA
TGACGCACACGTGTTTTGCGACGACTATGGGGATGTGTGAGATGGCCGTG
CAGAGGTATGATCGACATCGGTTGAGTCCATCGAGTGTTTACGGAGGCTT
AAATTATGGCACGGTTGAAGTGGACTGGGAGAAACAAGAAGCGTGGGTGG
ATGTGAGGAACAAAAGGGGGGAATCTGTATTGCAGACGCGGAGGAGGTTG
GACAGGGATAGTCCTGGGGCGGCGTTGGGAGAGCCGTGGTCCATCAACAA
TAATAATGATTTGTACTTCTTTATTTTGGCCTTGATGTCCATTGCACTGG
TGACGTATGCTGTGTTCTGGGTGGTGCGGGGGTTGGTTAGGTGGAAGGGG
CGGCGTTTTGGGACGATGGTGGGAGGCGCAGGGGGCAATAAGGCGAATAA
GTACTCGAAGAAAGAAGCATAATGGCGCACGAACCTTTTATGGAACCACA
TCGTTGATTTCCGGCCCCAAGCTTATCTCTGGTTAGGCGATGCAGTTTAT
GTCAAGGAAAAAGAGGGCGACAATGAAGCAAACCTTCGCAAAGCCTACGC
CCGCCAGTTAAAAAACGAGGGTTACCAACGATTATTACACACGGGGGCTG
TCATTGAGGGTGTGTATGACGACCATGACATGTCTACGAATGATGGGCAT
CGTGTGATGCTTCTTCGCCTTCGCAGGGAACGACGTCCTCAACTTGCCCC
TGTCCCCAAGTCCAGGATAAGACAGCCGGGGATAACACTGTGCATGGGTA
TACCCATGCTGCTTGGAATGGTACTGCTGTGCTCTTTCACTGGCGCGGTG
GTCATGGACCAAAGCAACACGGTGGAGATTGACGGCCACTACGAGAATCA
GACGCTTACACGCCTGGCCTTTGGCTCGTGCAACAAACAGAACTACACCC
CCCAACGGCAAGCGGCCTACCTCGACTTCCTCGGCCACATCCCCCCTTCC
TCCCCCCGCCGTTCGCGCCTCGGCCTCTTCTCCTCCCATGTCTTCGGGGT
CGCGCCACAACAAGTCAAGATTATTTTCATGGACGTTCGCTCGCTGAGCG
ACAATCCCGCCCTGAATCTCCCTGCGTGGATCGCTGACTTCATGTGGCCG
GTCAAGCCGTATTTGCTTGCCCTGACCCGGTGGACTGCCGTCTTGCTTGG
AGTCACCAAGAGGTTTCAAGGCGACATGCTGGGGGCCGAGCAGTGGGCTT
GGCTAGAAGGGCAGTTGGAAAAATCGGAGGCTTCCATGCATATACTCGTC
TCGTCCGTGCAGCTGTTATCGGTGAACCCGATTGTGGAAGGGTGGGGACA
TTACCCTGCAGCCCAAGCACGCCTGTTGGCCTTGTTGCGGAAGTACCGAC
CGAGAGGGTTGGTGGTCCTGTCGGGGGATGTACATTTTTCTGAGCTACTG
GTGACGCAGCCGGAGGAGTGGGTGGATGAAGAGGAAGGGAGGGAGGCTTT
GGAAGTGACGAGCAGTGGCATGACGCACACGTGTTTTGCGACGACTATGG
GGATGTGTGAGATGGCCGTGCAGAGGTATGATCGACATCGGTTGAGTCCA
TCGAGTGTTTACGGAGGCTTAAATTATGGCACGGTTGAAGTGGACTGGGA
GAAACAAGAAGCGTGGGTGGATGTGAGGAACAAAAGGGGGGAATCTGTAT
TGCAGACGCGGAGGAGGTTGGACAGGGATAGTCCTGGGGCGGCGTTGGGA
GAGCCGTGGTCCATCAACAATAATAATGATTTGTACTTCTTTATTTTGGC
CTTGATGTCCATTGCACTGGTGACGTATGCTGTGTTCTGGGTGGTGCGGG
GGTTGGTTAGGTGGAAGGGGCGGCGTTTTGGGACGATGGTGGGAGGCGCA
GGGGGCAATAAGGCGAATAAGTACTCGAAGAAAGAAGCATAATGGCGCAC
GAACCTTTTATGGAACCACATCGTTGATTTCCGGCCCCAAGCTTATCTCT
GGTTAGGCGATGCAGTTTATGTCAAGGAAAAAGAGGGCGACAATGAAGCA
AACCTTCGCAAAGCCTACGCCCGCCAGTTAAAAAACGAGGGTTACCAACG
ATTATTACACACGGGGGCTGTCATTGAGGGTGTGTATGACGACCATGACA
TGTCTACGAATGATGGGCATCGTGTGATGCTTCTTCGCCTTCGCAGGGAA
CGACGTCCTCAACTTGCCCCTGTCCCCAAGTCCAGGATAAGACAGCCGGG
GATAACACTGTGCATGGGTATACCCATGCTGCTTGGAATGGTACTGCTGT
GCTCTTTCACTGGCGCGGTGGTCATGGACCAAAGCAACACGGTGGAGATT
GACGGCCACTACGAGAATCAGACGCTTACACGCCTGGCCTTTGGCTCGTG
CAACAAACAG back to top
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