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Properties
| Property Name | Value |
|---|
| TranscriptId | 53751 |
| Track | FilteredModels2 |
| ProteinId | 53665 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:440253..443431 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5095 ID=mRNA_5095|Name=jgi.p|Nanoce1779_2|53665|organism=Nannochloropsis oceanica|type=mRNA|length=2640bp
ACACTACTCAAGTCCCTTTGAGAAGTGCTGTCGTTGACGAGTCGTCCCTC
CTCCTGTCCCTGAATCTCACCGCACGCAATGGCTCGCATAGAGCTCTAAC
AGAATTTGGTCCAGGCTTCACACCGGGATGCAAATGACAGGCTTTCAAAC
TTGTGTGACCTCCTGCGTCCCTTCCGTGTGGTAGACATGACGGTTCCCCC
AATCCTTTGGCCTCCCAACAGAGCAAGGATTTAGGCTTTAGGCAAGGCAT
GATTTTAGAAGGCCACTAAACTGAATTTCAGGCACACATCATATGCACAC
ACAATATAAACATCGTTGCAAGGACGCGGCAGGCGTAGGTTTGGCCACGT
TTGTGCATTTTGGTGCCAGCTTCGTTCGCTTCTTTCCTGCTCTTCCCTGA
GAGTGCTGTTCGTGGGATTCGGCCCATGCGAAGGACTACAAGTCCGTCGA
CTGAGCAGGTAAAATTTCACCGGCCTTGCTCACTCCTGTTCGTCCACATT
ACTACTACACAGGTGTCTCCAGAGACTCCTACCTCGAGGGCGTTTGAATC
TTGTCCACCTCAAGGACCCGTCCACGTCTTCTCCTTCACTTCTACTACCA
TGGATGTTGTCAGCACCAGCACCAAGGGTAGCCAACTTCCCCGCCGGTAT
AAGTGCAAGTACGAAGGCTGTGGCAAGGCCTTTACCAAGTCCTCCAATCT
CGTCCAACACGTCAGAATTCACACGGGAGAACGCCCCTTCCCATGCAAAT
ACCCAGGATGTGGGAAGAACTTCCGTCAGTCCGGTAACTTGACAAAGCAC
ATGCGTTCTCACGAACACTCCCACCTCCGCTGGAAGCGCAACACTAAAGA
GAAGCCCTTCCGCTGCACCCACCTCGGATGTGAGAAGTCATTCACCGCCA
AGAGTTCCCTCAAGATCCACATTGCCCAGCACGCGGATCATTTATCCCTC
AGCGGCAACAACCATGGCATGCCTATCGGGATAACTACCCCTACTCGTAC
CGGTACTGCTCAAGACTCCCTCTTCTCTACTCCTGCTGGAACTACCATCC
ACCACCATCAACAACAGCAGCGACAATACCACCAGCATAACCACCACCAC
CAGCAGCGTCAGCAGCAACATCAACAGCAGCAGCAACATGAACGTATCTC
CTCCACAATATCTCCCTTTATCAAATCAAGCACCAGCAGCAGCAGCCCCA
CCACCACCACTACCACTACTATCATGCCTTCGGCGACCCGCCACACTTGC
AACCACCCAGGATGCGGAGCCATTTTCACTTCCGCCTATGCATTGAAGCA
TCATGCCCTGATCGCCTGCTCGACCCTCATGGACGATCATGAGCACCTGC
GTCGTCTCGTCAATGAGTCAGTGCAGCTCCTCGCCCTGCACGTCGGGGCC
CGCGCTTCGCCCGCTGTGGCAAGCTTTATTGATCGCGTCCGAGACACCAA
TTCGAAGCACGTGGCTGGTGCAAGGCAGATGCAGCAGGAGCAACAGTTGT
TGCGACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACAGCAGGTGGGAGGAGGAGCGATTCTGCCGGAGGAGGACGAAGAGGA
GGACGAGGACGAGGAGGAAGACGAGGACGAGGACGAGGATGAGGATGAGG
AGGAGGTAGAGGGAGAGGAGGGGGAGGACCAGCCTCAGCAGCAGCAGCGG
CAGCCACAAGGCCATCGTCACCAGCATGCGAAGCATCAGCAGCGTCTCTC
GTCCTCCTCCCACCAGAGCAGTATCTTACAAGAGCAGCAGCAACAACAGC
AGCACGCGCAGCAGCCGCCCCACACTCGCAGTGGTCAGAATAGCATGGAC
TGGGAGCAAGCCGCGGTCCACCAACAGCACCAGCAGCAGCTCCTTCTTCC
CATGACCTCCCTCCCCGCCCACACACACCCTAGCAGCAGCAGCGACAGCA
ACACCATGCCTCCGAAAAAGAAGGAACGCCTGATGCATCTACCTGCAGGG
AATAGCAACCAGGGCGTCGGAGTGATCAAGGCAGATATGACTGATGATAT
GGGTGTAGGGTTCTCTTTCACAATGACTCCTCACGGGACATTGACGGGCT
CTAGCCGTTTCAATGGGTTTGAGAACGCCGATGGAGGGAGGGAAGGAGGG
CTGTTGACACCTAGCGCAAACAATTTGATGTCCCCGGGTCTGGCTTTTGA
TTTCCCTCTTTCCGCCACCGAGGCAGCGACGGAGGGAGGGATGATGGGGC
CCCAGTCGGTGGCGATTTTCTCACCTAGCCAGGGGACATTTGTGTTTACA
TAAGTTTGTGTTGAAAGAGGATTAATGGTGTTTGTGAAACCGTTTTAAAA
GGGTGGATGGTGTTCACAAAGCCGTTGAAGAGGATGGATAGAGGGAGGTA
CGGAAAGGAGGAGGGAAATAGAAAGGGCAGGAGGAGGAGGAGGGAGAATT
TGTACGAAGTAAAGTGCGAGAGCGGATAAAGGAGAGAGACACGTTTCGTT
GTTTATGTTTGTTCTGGACTGAAGGCAAAGGGTTTGCCGGCTTTCTGGAT
ATTTTTATCGGAAGGGGGAAAAGGAGTGGATAAAAAGAGAAGACGGAGAA
AGATAGATAGACATAAGAGAGGAGGGAGAGAGACAGAGAG back to topprotein sequence of jgi.p|Nanoce1779_2|53665 >mRNA_5095-protein ID=mRNA_5095-protein|Name=jgi.p|Nanoce1779_2|53665|organism=Nannochloropsis oceanica|type=polypeptide|length=626bp
MRRTTSPSTEQVKFHRPCSLLFVHITTTQVSPETPTSRAFESCPPQGPVH
VFSFTSTTMDVVSTSTKGSQLPRRYKCKYEGCGKAFTKSSNLVQHVRIHT
GERPFPCKYPGCGKNFRQSGNLTKHMRSHEHSHLRWKRNTKEKPFRCTHL
GCEKSFTAKSSLKIHIAQHADHLSLSGNNHGMPIGITTPTRTGTAQDSLF
STPAGTTIHHHQQQQRQYHQHNHHHQQRQQQHQQQQQHERISSTISPFIK
SSTSSSSPTTTTTTTIMPSATRHTCNHPGCGAIFTSAYALKHHALIACST
LMDDHEHLRRLVNESVQLLALHVGARASPAVASFIDRVRDTNSKHVAGAR
QMQQEQQLLRQQQQQQQQQQQQQQQQQQVGGGAILPEEDEEEDEDEEEDE
DEDEDEDEEEVEGEEGEDQPQQQQRQPQGHRHQHAKHQQRLSSSSHQSSI
LQEQQQQQQHAQQPPHTRSGQNSMDWEQAAVHQQHQQQLLLPMTSLPAHT
HPSSSSDSNTMPPKKKERLMHLPAGNSNQGVGVIKADMTDDMGVGFSFTM
TPHGTLTGSSRFNGFENADGGREGGLLTPSANNLMSPGLAFDFPLSATEA
ATEGGMMGPQSVAIFSPSQGTFVFT* back to topmRNA from alignment at scaffold_12:440253..443431- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5095 ID=mRNA_5095|Name=jgi.p|Nanoce1779_2|53665|organism=Nannochloropsis oceanica|type=mRNA|length=3179bp|location=Sequence derived from alignment at scaffold_12:440253..443431- (Nannochloropsis oceanica)
ACACTACTCAAGTCCCTTTGAGAAGTGCTGTCGTTGACGAGTCGTCCCTC
CTCCTGTCCCTGAATCTCACCGCACGCAATGGCTCGCATAGAGCTCTAAC
AGAATTTGGTCCAGGCTTCACACCGGGATGCAAATGACAGGCTTTCAAAC
TTGTGTGACCTCCTGCGTCCCTTCCGTGTGGTAGACATGACGGTTCCCCC
AATCCTTTGGCCTCCCAACAGAGCAAGGATTTAGGCTTTAGGCAAGGCAT
GATTTTAGAAGGCCACTAAACTGAATTTCAGGCACACATCATATGCACAC
ACAATATAAACATCGTTGCAAGGACGCGGCAGGCGTAGGTTTGGCCACGT
TTGTGCATTTTGGTGCCAGCTTCGTTCGCTTCTTTCCTGCTCTTCCCTGA
GAGTGCTGTTCGTGGGATTCGGCCCATGCGAAGGACTACAAGTCCGTCGA
CTGAGCAGGTAAAATTTCACCGGCCTTGCTCACTCCTGTTCGTCCACATT
ACTACTACACAGGTGTCTCCAGAGACTCCTACCTCGAGGGCGTTTGAATC
TTGTCCACCTCAAGGACCCGTCCACGTCTTCTCCTTCACTTCTACTACCA
TGGATGTTGTCAGCACCAGCACCAAGGGTAGCCAACTTCCCCGCCGGTAT
AAGTGCAAGTACGAAGGCTGTGGCAAGGCCTTTACCAAGGTAAGTACTTC
TCGTAGTGATCGGAGGAGGTGGGTGGAGGAGATAGGGGGACAGCATCAAA
GGAGGGGGGTGAGAGTAGGGACGTTGTAGGATGAAAGAGACCGCTTCACT
TTACACAAATGCCACGCTCCTTCACCCAGCGCTGTATCACTACTTTCACT
CATCTCACGACAAGCCCGCGTCCAACCCCCTAACCTTGAAGCTCTAGTAC
CATCCACTCGCTCAACCCCTCTCCTTCCCTCTCTCCCTCCCCCTTTCCCA
CTCATACAGTCCTCCAATCTCGTCCAACACGTCAGAATTCACACGGGAGA
ACGCCCCTTCCCATGCAAATACCCAGGATGTGGGAAGAACTTCCGTCAGT
CCGGTAACTTGACAAAGCACATGCGTTCTCACGAACACTCCCACCTCCGC
TGGAAGCGCAACACTAAAGAGAAGCCCTTCCGCTGCACCCACCTCGGATG
TGAGAAGTCATTCACCGCCAAGAGTTCCCTCAAGATCCACATTGCCCAGC
ACGCGGATCATTTATCCCTCAGCGGCAACAACCATGGCATGCCTATCGGG
ATAACTACCCCTACTCGTACCGGTACTGCTCAAGACTCCCTCTTCTCTAC
TCCTGCTGGAACTACCATCCACCACCATCAACAACAGCAGCGACAATACC
ACCAGCATAACCACCACCACCAGCAGCGTCAGCAGCAACATCAACAGCAG
CAGCAACATGAACGTATCTCCTCCACAATATCTCCCTTTATCAAATCAAG
CACCAGCAGCAGCAGCCCCACCACCACCACTACCACTACTATCATGCCTT
CGGCGACCCGCCACACTTGCAACCACCCAGGATGCGGAGCCATTTTCACT
TCCGCCTATGCATTGAAGCATCATGCCCTGATCGCCTGCTCGACCCTCAT
GGACGATCATGAGCACCTGCGTCGTCTCGTCAATGAGTCAGTGCAGCTCC
TCGCCCTGCACGTCGGGGCCCGCGCTTCGCCCGCTGTGGCAAGCTTTATT
GATCGCGTCCGAGACACCAATTCGAAGCACGTGGCTGGTGCAAGGCAGAT
GCAGCAGGAGCAACAGTTGTTGCGACAACAACAACAACAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAACAGCAGGTGGGAGGAGGAGCGATTCTG
CCGGAGGAGGACGAAGAGGAGGACGAGGACGAGGAGGAAGACGAGGACGA
GGACGAGGATGAGGATGAGGAGGAGGTAGAGGGAGAGGAGGGGGAGGACC
AGCCTCAGCAGCAGCAGCGGCAGCCACAAGGCCATCGTCACCAGCATGCG
AAGCATCAGCAGCGTCTCTCGTCCTCCTCCCACCAGAGCAGTATCTTACA
AGAGCAGCAGCAACAACAGCAGCACGCGCAGCAGCCGCCCCACACTCGCA
GTGGTCAGAATAGCATGGACTGGGAGCAAGCCGCGGTCCACCAACAGCAC
CAGCAGCAGCTCCTTCTTCCCATGACCTCCCTCCCCGCCCACACACACCC
TAGCAGCAGCAGCGACAGCAACACCATGCCTCCGAAAAAGAAGGAACGCC
TGATGCATCTACCTGCAGGGAATAGCAACCAGGGCGTCGGAGTGATCAAG
GCAGATATGACTGATGATATGGGTGTAGGGTTCTCTTTCACAATGACTCC
TCACGGGACATTGACGGGCTCTAGCCGTTTCAATGGGTTTGAGAACGCCG
ATGGAGGGAGGGAAGGAGGGCTGTTGACACCTAGCGCAAACAATTTGATG
TCCCCGGGTCTGGCTTTTGATTTCCCTCTTTCCGCCACCGAGGCAGCGAC
GGAGGGAGGGATGATGGGGCCCCAGTCGGTGGCGATTTTCTCACCTAGCC
AGGGGACATTTGTGTTTACATAAGTTTGTGTTGAAAGAGGATTAATGGTG
TTTGTGAAACCGTTTTAAAAGGGTGGATGGTGTTCACAAAGCCGTTGAAG
AGGATGGATAGAGGGAGGTACGGAAAGGAGGAGGGAAATAGAAAGGGCAG
GAGGAGGAGGAGGGAGAATTTGTACGAAGTAAAGTGCGAGAGCGGATAAA
GGAGAGAGACACAAGGAGGAAGAGGGGAAGGGCTGTGTGATAATTACATG
TAAGTGAGCAAATGGAGACATGCATTGGGGGGAATGAATTGGAAACGTAC
ATAGTGATAAAACAAGGACAGCACAAGCACACACTACTACTGTCGGCTCG
AACTGACTTGCAACGGAAGGGAGGAACTCTTTCACGAAGACTTTTGCAAA
GCGCGCCGCCCAGCATGTTAACATACGTACGTCGTAGAAAGAGATATCTT
GGGGGCGGGGAAAAGCTATTGTATCGCACACGTTTCGTTGTTTATGTTTG
TTCTGGACTGAAGGCAAAGGGTTTGCCGGCTTTCTGGATATTTTTATCGG
AAGGGGGAAAAGGAGTGGATAAAAAGAGAAGACGGAGAAAGATAGATAGA
CATAAGAGAGGAGGGAGAGAGACAGAGAG back to topCoding sequence (CDS) from alignment at scaffold_12:440253..443431- >mRNA_5095 ID=mRNA_5095|Name=jgi.p|Nanoce1779_2|53665|organism=Nannochloropsis oceanica|type=CDS|length=3756bp|location=Sequence derived from alignment at scaffold_12:440253..443431- (Nannochloropsis oceanica)
TCCTCCAATCTCGTCCAACACGTCAGAATTCACACGGGAGAACGCCCCTT
CCCATGCAAATACCCAGGATGTGGGAAGAACTTCCGTCAGTCCGGTAACT
TGACAAAGCACATGCGTTCTCACGAACACTCCCACCTCCGCTGGAAGCGC
AACACTAAAGAGAAGCCCTTCCGCTGCACCCACCTCGGATGTGAGAAGTC
ATTCACCGCCAAGAGTTCCCTCAAGATCCACATTGCCCAGCACGCGGATC
ATTTATCCCTCAGCGGCAACAACCATGGCATGCCTATCGGGATAACTACC
CCTACTCGTACCGGTACTGCTCAAGACTCCCTCTTCTCTACTCCTGCTGG
AACTACCATCCACCACCATCAACAACAGCAGCGACAATACCACCAGCATA
ACCACCACCACCAGCAGCGTCAGCAGCAACATCAACAGCAGCAGCAACAT
GAACGTATCTCCTCCACAATATCTCCCTTTATCAAATCAAGCACCAGCAG
CAGCAGCCCCACCACCACCACTACCACTACTATCATGCCTTCGGCGACCC
GCCACACTTGCAACCACCCAGGATGCGGAGCCATTTTCACTTCCGCCTAT
GCATTGAAGCATCATGCCCTGATCGCCTGCTCGACCCTCATGGACGATCA
TGAGCACCTGCGTCGTCTCGTCAATGAGTCAGTGCAGCTCCTCGCCCTGC
ACGTCGGGGCCCGCGCTTCGCCCGCTGTGGCAAGCTTTATTGATCGCGTC
CGAGACACCAATTCGAAGCACGTGGCTGGTGCAAGGCAGATGCAGCAGGA
GCAACAGTTGTTGCGACAACAACAACAACAACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAACAGCAGGTGGGAGGAGGAGCGATTCTGCCGGAGGAG
GACGAAGAGGAGGACGAGGACGAGGAGGAAGACGAGGACGAGGACGAGGA
TGAGGATGAGGAGGAGGTAGAGGGAGAGGAGGGGGAGGACCAGCCTCAGC
AGCAGCAGCGGCAGCCACAAGGCCATCGTCACCAGCATGCGAAGCATCAG
CAGCGTCTCTCGTCCTCCTCCCACCAGAGCAGTATCTTACAAGAGCAGCA
GCAACAACAGCAGCACGCGCAGCAGCCGCCCCACACTCGCAGTGGTCAGA
ATAGCATGGACTGGGAGCAAGCCGCGGTCCACCAACAGCACCAGCAGCAG
CTCCTTCTTCCCATGACCTCCCTCCCCGCCCACACACACCCTAGCAGCAG
CAGCGACAGCAACACCATGCCTCCGAAAAAGAAGGAACGCCTGATGCATC
TACCTGCAGGGAATAGCAACCAGGGCGTCGGAGTGATCAAGGCAGATATG
ACTGATGATATGGGTGTAGGGTTCTCTTTCACAATGACTCCTCACGGGAC
ATTGACGGGCTCTAGCCGTTTCAATGGGTTTGAGAACGCCGATGGAGGGA
GGGAAGGAGGGCTGTTGACACCTAGCGCAAACAATTTGATGTCCCCGGGT
CTGGCTTTTGATTTCCCTCTTTCCGCCACCGAGGCAGCGACGGAGGGAGG
GATGATGGGGCCCCAGTCGGTGGCGATTTTCTCACCTAGCCAGGGGACAT
TTGTGTTTACATAAATGCGAAGGACTACAAGTCCGTCGACTGAGCAGGTA
AAATTTCACCGGCCTTGCTCACTCCTGTTCGTCCACATTACTACTACACA
GGTGTCTCCAGAGACTCCTACCTCGAGGGCGTTTGAATCTTGTCCACCTC
AAGGACCCGTCCACGTCTTCTCCTTCACTTCTACTACCATGGATGTTGTC
AGCACCAGCACCAAGGGTAGCCAACTTCCCCGCCGGTATAAGTGCAAGTA
CGAAGGCTGTGGCAAGGCCTTTACCAAGTCCTCCAATCTCGTCCAACACG
TCAGAATTCACACGGGAGAACGCCCCTTCCCATGCAAATACCCAGGATGT
GGGAAGAACTTCCGTCAGTCCGGTAACTTGACAAAGCACATGCGTTCTCA
CGAACACTCCCACCTCCGCTGGAAGCGCAACACTAAAGAGAAGCCCTTCC
GCTGCACCCACCTCGGATGTGAGAAGTCATTCACCGCCAAGAGTTCCCTC
AAGATCCACATTGCCCAGCACGCGGATCATTTATCCCTCAGCGGCAACAA
CCATGGCATGCCTATCGGGATAACTACCCCTACTCGTACCGGTACTGCTC
AAGACTCCCTCTTCTCTACTCCTGCTGGAACTACCATCCACCACCATCAA
CAACAGCAGCGACAATACCACCAGCATAACCACCACCACCAGCAGCGTCA
GCAGCAACATCAACAGCAGCAGCAACATGAACGTATCTCCTCCACAATAT
CTCCCTTTATCAAATCAAGCACCAGCAGCAGCAGCCCCACCACCACCACT
ACCACTACTATCATGCCTTCGGCGACCCGCCACACTTGCAACCACCCAGG
ATGCGGAGCCATTTTCACTTCCGCCTATGCATTGAAGCATCATGCCCTGA
TCGCCTGCTCGACCCTCATGGACGATCATGAGCACCTGCGTCGTCTCGTC
AATGAGTCAGTGCAGCTCCTCGCCCTGCACGTCGGGGCCCGCGCTTCGCC
CGCTGTGGCAAGCTTTATTGATCGCGTCCGAGACACCAATTCGAAGCACG
TGGCTGGTGCAAGGCAGATGCAGCAGGAGCAACAGTTGTTGCGACAACAA
CAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGGT
GGGAGGAGGAGCGATTCTGCCGGAGGAGGACGAAGAGGAGGACGAGGACG
AGGAGGAAGACGAGGACGAGGACGAGGATGAGGATGAGGAGGAGGTAGAG
GGAGAGGAGGGGGAGGACCAGCCTCAGCAGCAGCAGCGGCAGCCACAAGG
CCATCGTCACCAGCATGCGAAGCATCAGCAGCGTCTCTCGTCCTCCTCCC
ACCAGAGCAGTATCTTACAAGAGCAGCAGCAACAACAGCAGCACGCGCAG
CAGCCGCCCCACACTCGCAGTGGTCAGAATAGCATGGACTGGGAGCAAGC
CGCGGTCCACCAACAGCACCAGCAGCAGCTCCTTCTTCCCATGACCTCCC
TCCCCGCCCACACACACCCTAGCAGCAGCAGCGACAGCAACACCATGCCT
CCGAAAAAGAAGGAACGCCTGATGCATCTACCTGCAGGGAATAGCAACCA
GGGCGTCGGAGTGATCAAGGCAGATATGACTGATGATATGGGTGTAGGGT
TCTCTTTCACAATGACTCCTCACGGGACATTGACGGGCTCTAGCCGTTTC
AATGGGTTTGAGAACGCCGATGGAGGGAGGGAAGGAGGGCTGTTGACACC
TAGCGCAAACAATTTGATGTCCCCGGGTCTGGCTTTTGATTTCCCTCTTT
CCGCCACCGAGGCAGCGACGGAGGGAGGGATGATGGGGCCCCAGTCGGTG
GCGATTTTCTCACCTAGCCAGGGGACATTTGTGTTTACATAAATGCGAAG
GACTACAAGTCCGTCGACTGAGCAGGTAAAATTTCACCGGCCTTGCTCAC
TCCTGTTCGTCCACATTACTACTACACAGGTGTCTCCAGAGACTCCTACC
TCGAGGGCGTTTGAATCTTGTCCACCTCAAGGACCCGTCCACGTCTTCTC
CTTCACTTCTACTACCATGGATGTTGTCAGCACCAGCACCAAGGGTAGCC
AACTTCCCCGCCGGTATAAGTGCAAGTACGAAGGCTGTGGCAAGGCCTTT
ACCAAG back to top
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