jgi.p|Nanoce1779_2|591354, mRNA_5091 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591354
Unique NamemRNA_5091
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1304
Alignment locationscaffold_12:429958..431376 -

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Properties
Property NameValue
TranscriptId591440
TrackFilteredModels2
ProteinId591354
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:429958..431376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591354gene_5091Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591354mRNA_5091-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5091CDS_5091Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5091 ID=mRNA_5091|Name=jgi.p|Nanoce1779_2|591354|organism=Nannochloropsis oceanica|type=mRNA|length=1304bp
ACAGCTCGATCAGCGGCCTCTACACCAGCAGCTAAGCCTACTTGACCATG
GAAGACGAGCGCATGCAGCGTCTTCACGACACGCTCGAGAAGCTCCGACC
CCGAGGCAAGACGGGAGGCCTGGGCTTCAGTTCAGGCTTTGGGCCCAAGA
AGACTGACGACGACTTACCCAAGAATGGTTTGTACGCATATTTTGTCCGC
GCAGGACATAGTGGGTATAAGAAATGGGGAGAGGATGCAGAGGAGAAGGA
GGAGGAGGAGAATAGGAGCAGCACCTTGGCTAATGATGGCGATAGCAGCA
GCAAGAATAAAAAGAAGAAGAACAGGAAGACGGAAAAGGAGCGAAACACC
AATAAGCGCAAGGATTTGGAGTTGACAGAAGCGGAGGAGAGGGAGGAAGG
GGAGCCGTCTAAGAAGAGGCGGCGTAAGAGCGCCAAGGAGGAAGACGAAG
AGGAAGAGGAAGAGAAGGTACCGCAAAATCCTCAAGCTGGCGATGCCACC
ACAACATCCACATCACCAGACAAGGCCTTTCCCTGGGTGAAGAACATCAA
GAGGGTGCTGAAAGAGACGGAGGAGAAGAAACTTTGTTTGAGGAAGCTCC
GGAAGCAAGTGGTAGGAGCAGCAGCAGCTGCAGCAACAGCCGCAGCACCA
TCGGCGTCAGTCGACAATAAAAAAAGCAAGAAGGTTTTGACGCAGGCGTT
TCATTTGGTCCTTGACACGCATGACTTGTTGCATGTACAGGATGGGGTGG
TTCATTATCTGAGGAAGAAAAAGGACAGGAAAGGAGGTGAGGTGGGAAAG
GAGGAAGAGGAGGAGGAAGAGAACGAGGAGGAGGAGGAAGAGAGGGAGAA
GAAAGGGAAGAAGGAGATGGCGAAGTATGTGAAGTCGACGACAAAGAAAA
AGAAAAATTTGGTCGAGAAGAAGATAAAGAAGGGGATGAAAAGCGACACG
CTGATGAAGGACGAAAAGGTGGAGCAGGATGAAGAGGCGGTGGTGGAGAA
GGAGAAAAAAAACGAGAAACGCAAGGCCACGTTTGTGAAGGAGGAAGTGA
AAGAGGAAGACAAAGAGGAGGGAGGATTGGTGGTTGTAGAAAAGAAGACC
AAACGGGAGAAAAAGGAAGCCAAGGAGGAGAAGAAGAAGAAGGAGGAGGC
AGCTGCACTTCTTGTGAAGGCGTCTAAGAAGCAGAAGAAGAAGAAGGGAA
GCAAAGCCTAGAGCATGAAGTTATTTCTTAGATATTTGTAAAAAAACTAG
TTTCCAAATGCTCACCACCAGGAAAGAAACAACACCAACGACTGCATGGC
AGCA
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protein sequence of jgi.p|Nanoce1779_2|591354

>mRNA_5091-protein ID=mRNA_5091-protein|Name=jgi.p|Nanoce1779_2|591354|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKKTDDDLPKNGLYAYFV
RAGHSGYKKWGEDAEEKEEEENRSSTLANDGDSSSKNKKKKNRKTEKERN
TNKRKDLELTEAEEREEGEPSKKRRRKSAKEEDEEEEEEKVPQNPQAGDA
TTTSTSPDKAFPWVKNIKRVLKETEEKKLCLRKLRKQVVGAAAAAATAAA
PSASVDNKKSKKVLTQAFHLVLDTHDLLHVQDGVVHYLRKKKDRKGGEVG
KEEEEEEENEEEEEEREKKGKKEMAKYVKSTTKKKKNLVEKKIKKGMKSD
TLMKDEKVEQDEEAVVEKEKKNEKRKATFVKEEVKEEDKEEGGLVVVEKK
TKREKKEAKEEKKKKEEAAALLVKASKKQKKKKGSKA*
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mRNA from alignment at scaffold_12:429958..431376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5091 ID=mRNA_5091|Name=jgi.p|Nanoce1779_2|591354|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at scaffold_12:429958..431376- (Nannochloropsis oceanica)
ACAGCTCGATCAGCGGCCTCTACACCAGCAGCTAAGCCTACTTGACCATG
GAAGACGAGCGCATGCAGCGTCTTCACGACACGCTCGAGAAGCTCCGACC
CCGAGGCAAGGTAAGATACAAGTTGGTGCCTGAGTGTGTCTCCATGTACC
TTGTGTGTCCTACTTCATTCGGCGCCTCATCCTCCTCTCCCATACCCCAC
CCACACACATATAACCGAAATAAAGACGGGAGGCCTGGGCTTCAGTTCAG
GCTTTGGGCCCAAGAAGACTGACGACGACTTACCCAAGAATGGTTTGTAC
GCATATTTTGTCCGCGCAGGACATAGTGGGTATAAGAAATGGGGAGAGGA
TGCAGAGGAGAAGGAGGAGGAGGAGAATAGGAGCAGCACCTTGGCTAATG
ATGGCGATAGCAGCAGCAAGAATAAAAAGAAGAAGAACAGGAAGACGGAA
AAGGAGCGAAACACCAATAAGCGCAAGGATTTGGAGTTGACAGAAGCGGA
GGAGAGGGAGGAAGGGGAGCCGTCTAAGAAGAGGCGGCGTAAGAGCGCCA
AGGAGGAAGACGAAGAGGAAGAGGAAGAGAAGGTACCGCAAAATCCTCAA
GCTGGCGATGCCACCACAACATCCACATCACCAGACAAGGCCTTTCCCTG
GGTGAAGAACATCAAGAGGGTGCTGAAAGAGACGGAGGAGAAGAAACTTT
GTTTGAGGAAGCTCCGGAAGCAAGTGGTAGGAGCAGCAGCAGCTGCAGCA
ACAGCCGCAGCACCATCGGCGTCAGTCGACAATAAAAAAAGCAAGAAGGT
TTTGACGCAGGCGTTTCATTTGGTCCTTGACACGCATGACTTGTTGCATG
TACAGGATGGGGTGGTTCATTATCTGAGGAAGAAAAAGGACAGGAAAGGA
GGTGAGGTGGGAAAGGAGGAAGAGGAGGAGGAAGAGAACGAGGAGGAGGA
GGAAGAGAGGGAGAAGAAAGGGAAGAAGGAGATGGCGAAGTATGTGAAGT
CGACGACAAAGAAAAAGAAAAATTTGGTCGAGAAGAAGATAAAGAAGGGG
ATGAAAAGCGACACGCTGATGAAGGACGAAAAGGTGGAGCAGGATGAAGA
GGCGGTGGTGGAGAAGGAGAAAAAAAACGAGAAACGCAAGGCCACGTTTG
TGAAGGAGGAAGTGAAAGAGGAAGACAAAGAGGAGGGAGGATTGGTGGTT
GTAGAAAAGAAGACCAAACGGGAGAAAAAGGAAGCCAAGGAGGAGAAGAA
GAAGAAGGAGGAGGCAGCTGCACTTCTTGTGAAGGCGTCTAAGAAGCAGA
AGAAGAAGAAGGGAAGCAAAGCCTAGAGCATGAAGTTATTTCTTAGATAT
TTGTAAAAAAACTAGTTTCCAAATGCTCACCACCAGGAAAGAAACAACAC
CAACGACTGCATGGCAGCA
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Coding sequence (CDS) from alignment at scaffold_12:429958..431376-

>mRNA_5091 ID=mRNA_5091|Name=jgi.p|Nanoce1779_2|591354|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_12:429958..431376- (Nannochloropsis oceanica)
ACGGGAGGCCTGGGCTTCAGTTCAGGCTTTGGGCCCAAGAAGACTGACGA
CGACTTACCCAAGAATGGTTTGTACGCATATTTTGTCCGCGCAGGACATA
GTGGGTATAAGAAATGGGGAGAGGATGCAGAGGAGAAGGAGGAGGAGGAG
AATAGGAGCAGCACCTTGGCTAATGATGGCGATAGCAGCAGCAAGAATAA
AAAGAAGAAGAACAGGAAGACGGAAAAGGAGCGAAACACCAATAAGCGCA
AGGATTTGGAGTTGACAGAAGCGGAGGAGAGGGAGGAAGGGGAGCCGTCT
AAGAAGAGGCGGCGTAAGAGCGCCAAGGAGGAAGACGAAGAGGAAGAGGA
AGAGAAGGTACCGCAAAATCCTCAAGCTGGCGATGCCACCACAACATCCA
CATCACCAGACAAGGCCTTTCCCTGGGTGAAGAACATCAAGAGGGTGCTG
AAAGAGACGGAGGAGAAGAAACTTTGTTTGAGGAAGCTCCGGAAGCAAGT
GGTAGGAGCAGCAGCAGCTGCAGCAACAGCCGCAGCACCATCGGCGTCAG
TCGACAATAAAAAAAGCAAGAAGGTTTTGACGCAGGCGTTTCATTTGGTC
CTTGACACGCATGACTTGTTGCATGTACAGGATGGGGTGGTTCATTATCT
GAGGAAGAAAAAGGACAGGAAAGGAGGTGAGGTGGGAAAGGAGGAAGAGG
AGGAGGAAGAGAACGAGGAGGAGGAGGAAGAGAGGGAGAAGAAAGGGAAG
AAGGAGATGGCGAAGTATGTGAAGTCGACGACAAAGAAAAAGAAAAATTT
GGTCGAGAAGAAGATAAAGAAGGGGATGAAAAGCGACACGCTGATGAAGG
ACGAAAAGGTGGAGCAGGATGAAGAGGCGGTGGTGGAGAAGGAGAAAAAA
AACGAGAAACGCAAGGCCACGTTTGTGAAGGAGGAAGTGAAAGAGGAAGA
CAAAGAGGAGGGAGGATTGGTGGTTGTAGAAAAGAAGACCAAACGGGAGA
AAAAGGAAGCCAAGGAGGAGAAGAAGAAGAAGGAGGAGGCAGCTGCACTT
CTTGTGAAGGCGTCTAAGAAGCAGAAGAAGAAGAAGGGAAGCAAAGCCTA
GATGGAAGACGAGCGCATGCAGCGTCTTCACGACACGCTCGAGAAGCTCC
GACCCCGAGGCAAGACGGGAGGCCTGGGCTTCAGTTCAGGCTTTGGGCCC
AAGAAGACTGACGACGACTTACCCAAGAATGGTTTGTACGCATATTTTGT
CCGCGCAGGACATAGTGGGTATAAGAAATGGGGAGAGGATGCAGAGGAGA
AGGAGGAGGAGGAGAATAGGAGCAGCACCTTGGCTAATGATGGCGATAGC
AGCAGCAAGAATAAAAAGAAGAAGAACAGGAAGACGGAAAAGGAGCGAAA
CACCAATAAGCGCAAGGATTTGGAGTTGACAGAAGCGGAGGAGAGGGAGG
AAGGGGAGCCGTCTAAGAAGAGGCGGCGTAAGAGCGCCAAGGAGGAAGAC
GAAGAGGAAGAGGAAGAGAAGGTACCGCAAAATCCTCAAGCTGGCGATGC
CACCACAACATCCACATCACCAGACAAGGCCTTTCCCTGGGTGAAGAACA
TCAAGAGGGTGCTGAAAGAGACGGAGGAGAAGAAACTTTGTTTGAGGAAG
CTCCGGAAGCAAGTGGTAGGAGCAGCAGCAGCTGCAGCAACAGCCGCAGC
ACCATCGGCGTCAGTCGACAATAAAAAAAGCAAGAAGGTTTTGACGCAGG
CGTTTCATTTGGTCCTTGACACGCATGACTTGTTGCATGTACAGGATGGG
GTGGTTCATTATCTGAGGAAGAAAAAGGACAGGAAAGGAGGTGAGGTGGG
AAAGGAGGAAGAGGAGGAGGAAGAGAACGAGGAGGAGGAGGAAGAGAGGG
AGAAGAAAGGGAAGAAGGAGATGGCGAAGTATGTGAAGTCGACGACAAAG
AAAAAGAAAAATTTGGTCGAGAAGAAGATAAAGAAGGGGATGAAAAGCGA
CACGCTGATGAAGGACGAAAAGGTGGAGCAGGATGAAGAGGCGGTGGTGG
AGAAGGAGAAAAAAAACGAGAAACGCAAGGCCACGTTTGTGAAGGAGGAA
GTGAAAGAGGAAGACAAAGAGGAGGGAGGATTGGTGGTTGTAGAAAAGAA
GACCAAACGGGAGAAAAAGGAAGCCAAGGAGGAGAAGAAGAAGAAGGAGG
AGGCAGCTGCACTTCTTGTGAAGGCGTCTAAGAAGCAGAAGAAGAAGAAG
GGAAGCAAAGCCTAGATGGAAGACGAGCGCATGCAGCGTCTTCACGACAC
GCTCGAGAAGCTCCGACCCCGAGGCAAG
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Synonyms
Publications