jgi.p|Nanoce1779_2|591351, mRNA_5090 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591351
Unique NamemRNA_5090
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length951
Alignment locationscaffold_12:429007..429957 +

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Properties
Property NameValue
TranscriptId591437
TrackFilteredModels2
ProteinId591351
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:429007..429957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591351gene_5090Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591351mRNA_5090-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5090CDS_5090Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5090 ID=mRNA_5090|Name=jgi.p|Nanoce1779_2|591351|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
GCTGTCGACATTTTGAACAACCTCCCCCCCTCCTTTCCCCCTCCTTCATC
CCTCATACAGGGCACGACGATCCTTCCAAACTCTACACCCCCTCGCATAC
TTCAAGAATGTGCCATAGCTGCAAGTGCCTCATTGGCCCCTCCATGCTAG
CCAGCGACTTGTCGTGCATGGCCGCTGAGGCGCAAAAGGTGGTGGCGGGT
GGCGCAGACTACCTGCACTTAGACGTGATGGACGGTCATTTCGTGCCCAA
CATTACATGGGGGGCCCCAGTAATCAAGCACTTAAGAAAGCACTGTCCTG
GCGTTTTTTTTGACTGTCACATGATGGTGAGCAACCCCGAGCAATGGGTG
GAGGAAATCAAGGATGCCGGTGGAGATCAGTACACATTCCACCTCGAATC
TACCAAGGACCCCGCTGCCCTAATCAAGCAAATTCTGGCCTCAGGGATGA
AGGTCGGTATTGCCCTTCGCCCTGGCACGCCTGTGAAAGATGTATTGCCC
TGGGTTGATCTTGTGGACATGGTTTTAATCATGACGGTGGAACCGGGCTT
TGGGGGGCAGAAATTTAAGGCGGACATGATGCCCAAGGTGGCGCTTCTCC
GGGAAAAATACCCAGAAAAAGACATTGGAGTCGATGGAGGGCTCGGACCT
TCGACTATCGAAGCAGCGGCCGACGCGGGAGCTAATATGATAGTGGCTGG
GAGCTCCGTTTTCAAGAGTCCGGCGCCTGCCCAGGTGATCGCAACGTTGC
GAAGGGCTGTGGAGAGGCTTGGGAATGGGAAAAAGGAGGAGGAGCTGACG
CCCTTGCCTCCGGCATAAGAGGGGAGATACGTAGAGACGAGGGATGAAGG
GTAAGTTTCCCGAGTAGCTTCAAAATACAACATAAAATCAAAGTGTTTGG
GGAGAAATAAAGGAGGGATGGAAGGATGGGCACGACATGACAAAAGGTTT
A
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protein sequence of jgi.p|Nanoce1779_2|591351

>mRNA_5090-protein ID=mRNA_5090-protein|Name=jgi.p|Nanoce1779_2|591351|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MCHSCKCLIGPSMLASDLSCMAAEAQKVVAGGADYLHLDVMDGHFVPNIT
WGAPVIKHLRKHCPGVFFDCHMMVSNPEQWVEEIKDAGGDQYTFHLESTK
DPAALIKQILASGMKVGIALRPGTPVKDVLPWVDLVDMVLIMTVEPGFGG
QKFKADMMPKVALLREKYPEKDIGVDGGLGPSTIEAAADAGANMIVAGSS
VFKSPAPAQVIATLRRAVERLGNGKKEEELTPLPPA*
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mRNA from alignment at scaffold_12:429007..429957+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5090 ID=mRNA_5090|Name=jgi.p|Nanoce1779_2|591351|organism=Nannochloropsis oceanica|type=mRNA|length=951bp|location=Sequence derived from alignment at scaffold_12:429007..429957+ (Nannochloropsis oceanica)
GCTGTCGACATTTTGAACAACCTCCCCCCCTCCTTTCCCCCTCCTTCATC
CCTCATACAGGGCACGACGATCCTTCCAAACTCTACACCCCCTCGCATAC
TTCAAGAATGTGCCATAGCTGCAAGTGCCTCATTGGCCCCTCCATGCTAG
CCAGCGACTTGTCGTGCATGGCCGCTGAGGCGCAAAAGGTGGTGGCGGGT
GGCGCAGACTACCTGCACTTAGACGTGATGGACGGTCATTTCGTGCCCAA
CATTACATGGGGGGCCCCAGTAATCAAGCACTTAAGAAAGCACTGTCCTG
GCGTTTTTTTTGACTGTCACATGATGGTGAGCAACCCCGAGCAATGGGTG
GAGGAAATCAAGGATGCCGGTGGAGATCAGTACACATTCCACCTCGAATC
TACCAAGGACCCCGCTGCCCTAATCAAGCAAATTCTGGCCTCAGGGATGA
AGGTCGGTATTGCCCTTCGCCCTGGCACGCCTGTGAAAGATGTATTGCCC
TGGGTTGATCTTGTGGACATGGTTTTAATCATGACGGTGGAACCGGGCTT
TGGGGGGCAGAAATTTAAGGCGGACATGATGCCCAAGGTGGCGCTTCTCC
GGGAAAAATACCCAGAAAAAGACATTGGAGTCGATGGAGGGCTCGGACCT
TCGACTATCGAAGCAGCGGCCGACGCGGGAGCTAATATGATAGTGGCTGG
GAGCTCCGTTTTCAAGAGTCCGGCGCCTGCCCAGGTGATCGCAACGTTGC
GAAGGGCTGTGGAGAGGCTTGGGAATGGGAAAAAGGAGGAGGAGCTGACG
CCCTTGCCTCCGGCATAAGAGGGGAGATACGTAGAGACGAGGGATGAAGG
GTAAGTTTCCCGAGTAGCTTCAAAATACAACATAAAATCAAAGTGTTTGG
GGAGAAATAAAGGAGGGATGGAAGGATGGGCACGACATGACAAAAGGTTT
A
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Coding sequence (CDS) from alignment at scaffold_12:429007..429957+

>mRNA_5090 ID=mRNA_5090|Name=jgi.p|Nanoce1779_2|591351|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_12:429007..429957+ (Nannochloropsis oceanica)
ATGTGCCATAGCTGCAAGTGCCTCATTGGCCCCTCCATGCTAGCCAGCGA
CTTGTCGTGCATGGCCGCTGAGGCGCAAAAGGTGGTGGCGGGTGGCGCAG
ACTACCTGCACTTAGACGTGATGGACGGTCATTTCGTGCCCAACATTACA
TGGGGGGCCCCAGTAATCAAGCACTTAAGAAAGCACTGTCCTGGCGTTTT
TTTTGACTGTCACATGATGGTGAGCAACCCCGAGCAATGGGTGGAGGAAA
TCAAGGATGCCGGTGGAGATCAGTACACATTCCACCTCGAATCTACCAAG
GACCCCGCTGCCCTAATCAAGCAAATTCTGGCCTCAGGGATGAAGGTCGG
TATTGCCCTTCGCCCTGGCACGCCTGTGAAAGATGTATTGCCCTGGGTTG
ATCTTGTGGACATGGTTTTAATCATGACGGTGGAACCGGGCTTTGGGGGG
CAGAAATTTAAGGCGGACATGATGCCCAAGGTGGCGCTTCTCCGGGAAAA
ATACCCAGAAAAAGACATTGGAGTCGATGGAGGGCTCGGACCTTCGACTA
TCGAAGCAGCGGCCGACGCGGGAGCTAATATGATAGTGGCTGGGAGCTCC
GTTTTCAAGAGTCCGGCGCCTGCCCAGGTGATCGCAACGTTGCGAAGGGC
TGTGGAGAGGCTTGGGAATGGGAAAAAGGAGGAGGAGCTGACGCCCTTGC
CTCCGGCATAA
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Synonyms
Publications