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Properties
| Property Name | Value |
|---|
| TranscriptId | 542656 |
| Track | FilteredModels2 |
| ProteinId | 542570 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:427245..429956 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5089 ID=mRNA_5089|Name=jgi.p|Nanoce1779_2|542570|organism=Nannochloropsis oceanica|type=mRNA|length=2397bp
CAGACAGACAGACAAGCAGGCATGCATTGCCTGGCGTCGTAAGACACGCG
AGGAGGAAAATGACGACAGGGCCTTAACGGTATTGTTCCTGACGACATGA
GCTTGGGTTCTTCCTATTTGCCTCGTCGCCGCCGCCCTTCCCAGCCCACG
GCCCCTCCACTTCTCCACACATCCCAGGCCATACAGCTGACGTACAGGAG
CGCCTCTTTGGAGGTATCGATCTACGTTCGTCCCCTGCCCTCTCAATTCA
CCCCGTCCCTAGGCTGGGATGAACAGTGGGCCGCTCGGCGGGATCGTTTG
CGGCGACTCCCACCACGCGTCCCGCCCTCCCAGCTGCACCCACCACGAGC
GCCCTTGGCGCCTCCCCCATCGTCGTCCTCATCCTCTAATTCTGCCTCAA
CAGGCTTTTTGGTGCCCTACACAAATGAATTCCATCGTGTCACGAACTTC
ACCTCCTCCTTTACTGGCCTTTACCGTGATACGACCCTCTCCGGGGTGGC
CGTACACAATGAGCGGCTGCGACGTCACATGGCTATGCAAGAGAATCGTC
TCGAACGACGACAGATGAAGTGCATTCAGATGCAGAGCCTGGCGGCCAGG
TATCAGCACCGAGCCGACCACCTGCGACAACAGCTGCGGGACGATCGGCA
ACGAAAGTACACCTGCCTTGTCTCGGCCGTGCGGCGCCTCCAAGCCGTCT
TCCGTCTACAACAACACTTGCGGAGAAAGAAAGCAAAAGAGCTTTGCGTT
GCCAATGAGGCCGCAATGGTGGTTCAAGACTTTGGGAAGCGAGCTATGGC
AATCGTAAATGCTAAAAAGGAGCTGGTTAGACTGAAATACCAGGTACGCT
GCAAGGCTGCCGGTGCGGTCATTTTCACCTGGTGGAAATGTCGGTGGCAG
GTCTTGCAAGCCAAACGGTTGCGGCAGGCCCTACTTGTGGAGCGGCAACG
GCAGAAAGCCCAAGCTCGACTTAAGGTGGCCCTCTTTGGACAATCCCATT
TCCGGCGCCGACGAGACCATCGCTGGGTGGCGACAATGCGGCGTCGGAGG
ATGCAGGAAGAAGCCTTGGCAGCAGCCGCAGCGGCAGCAGCATCAGCAGC
ATGGGAGGAGGAGTTGGAACGGCGGCGGCGAAGGCGGAGGGAGCTGCATG
ACCGACCGTTTCGTTGAAATAAAAATGTTTAATGTGTTTGACTTTGCTAA
TTCAAAGTGTTATTGTTTTGATGTACAAAAATTCGCACTACATATGACGA
GTTTGGGCTGGAAGTGTTGGAAGAAGAATTGTTGGGAATGCAAAGAAAAA
AAGCGGGATAACGGACACATCAATCAGATCGACGGATGGCGACCACGCCT
TGCTTTCATTTCTTTAACTTTACGTGGAGGCTACAATACGACTGTGTATG
CATTTGAGTCAACTTTTGCCTGCCATTCTTTCCTGCAGTGCCTTGATGCT
GTCGACATTTTGAACAACCTCCCCCCCTCCTTTCCCCCTCCTTCATCCCT
CATACAGGGCACGACGATCCTTCCAAACTCTACACCCCCTCGCATACTTC
AAGAATGTGCCATAGCTGCAAGTGCCTCATTGGCCCCTCCATGCTAGCCA
GCGACTTGTCGTGCATGGCCGCTGAGGCGCAAAAGGTGGTGGCGGGTGGC
GCAGACTACCTGCACTTAGACGTGATGGACGGTCATTTCGTGCCCAACAT
TACATGGGGGGCCCCAGTAATCAAGCACTTAAGAAAGCACTGTCCTGGCG
TTTTTTTTGACTGTCACATGATGGTGAGCAACCCCGAGCAATGGGTGGAG
GAAATCAAGGATGCCGGTGGAGATCAGTACACATTCCACCTCGAATCTAC
CAAGGACCCCGCTGCCCTAATCAAGCAAATTCTGGCCTCAGGGATGAAGG
TCGGTATTGCCCTTCGCCCTGGCACGCCTGTGAAAGATGTATTGCCCTGG
GTTGATCTTGTGGACATGGTTTTAATCATGACGGTGGAACCGGGCTTTGG
GGGGCAGAAATTTAAGGCGGACATGATGCCCAAGGTGGCGCTTCTCCGGG
AAAAATACCCAGAAAAAGACATTGGAGTCGATGGAGGGCTCGGACCTTCG
ACTATCGAAGCAGCGGCCGACGCGGGAGCTAATATGATAGTGGCTGGGAG
CTCCGTTTTCAAGAGTCCGGCGCCTGCCCAGGTGATCGCAACGTTGCGAA
GGGCTGTGGAGAGGCTTGGGAATGGGAAAAAGGAGGAGGAGCTGACGCCC
TTGCCTCCGGCATAAGAGGGGAGATACGTAGAGACGAGGGATGAAGGGTA
AGTTTCCCGAGTAGCTTCAAAATACAACATAAAATCAAAGTGTTTGGGGA
GAAATAAAGGAGGGATGGAAGGATGGGCACGACATGACAAAAGGTTT back to topprotein sequence of jgi.p|Nanoce1779_2|542570 >mRNA_5089-protein ID=mRNA_5089-protein|Name=jgi.p|Nanoce1779_2|542570|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MSLGSSYLPRRRRPSQPTAPPLLHTSQAIQLTYRSASLEVSIYVRPLPSQ
FTPSLGWDEQWAARRDRLRRLPPRVPPSQLHPPRAPLAPPPSSSSSSNSA
STGFLVPYTNEFHRVTNFTSSFTGLYRDTTLSGVAVHNERLRRHMAMQEN
RLERRQMKCIQMQSLAARYQHRADHLRQQLRDDRQRKYTCLVSAVRRLQA
VFRLQQHLRRKKAKELCVANEAAMVVQDFGKRAMAIVNAKKELVRLKYQV
RCKAAGAVIFTWWKCRWQVLQAKRLRQALLVERQRQKAQARLKVALFGQS
HFRRRRDHRWVATMRRRRMQEEALAAAAAAAASAAWEEELERRRRRRREL
HDRPFR* back to topmRNA from alignment at scaffold_12:427245..429956+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5089 ID=mRNA_5089|Name=jgi.p|Nanoce1779_2|542570|organism=Nannochloropsis oceanica|type=mRNA|length=2712bp|location=Sequence derived from alignment at scaffold_12:427245..429956+ (Nannochloropsis oceanica)
CAGACAGACAGACAAGCAGGCATGCATTGCCTGGCGTCGTAAGACACGCG
AGGAGGAAAATGACGACAGGGCCTTAACGGTATTGTTCCTGACGACATGA
GCTTGGGTTCTTCCTATTTGCCTCGTCGCCGCCGCCCTTCCCAGCCCACG
GCCCCTCCACTTCTCCACACATCCCAGGCCATACAGCTGACGTACAGGAG
CGCCTCTTTGGAGGTATCGATCTACGTTCGTCCCCTGCCCTCTCAATTCA
CCCCGTCCCTAGGCTGGGATGAACAGTGGGCCGCTCGGCGGGATCGTTTG
CGGCGACTCCCACCACGCGTCCCGCCCTCCCAGCTGCACCCACCACGAGC
GCCCTTGGCGCCTCCCCCATCGTCGTCCTCATCCTCTAATTCTGCCTCAA
CAGGCTTTTTGGTGCCCTACACAAATGAATTCCATCGTGTCACGGTATGT
TCATTCCTACATGTCTCTTCAATCCCTGGTGCCTTTCCCTTCTCTGTCAT
CATTTCCTCCAATCCTCCTCTCCAATCCTACAATAAACAAAAAGAACTTC
ACCTCCTCCTTTACTGGCCTTTACCGTGATACGACCCTCTCCGGGGTGGC
CGTACACAATGAGCGGCTGCGACGTCACATGGCTATGCAAGAGAATCGTC
TCGAACGACGACAGATGAAGTGCATTCAGATGCAGAGCCTGGCGGCCAGG
TATCAGCACCGGTACGTGTAGTTTGCAGTGCACCTTCAAGGCTTTTCGAT
GCATATACCGGATTTTTAAAATCGTAAGAATACAACAAACTTTCTTGCTT
TGTCATACACTATTCTAGAGCCGACCACCTGCGACAACAGCTGCGGGACG
ATCGGCAACGAAAGTACACCTGCCTTGTCTCGGCCGTGCGGCGCCTCCAA
GCCGTCTTCCGTCTACAACAACACTTGCGGAGAAAGAAAGCAAAAGAGCT
TTGCGTTGCCAATGAGGCCGCAATGGTGGTTCAAGACTTTGGGAAGCGAG
CTATGGCAATCGTAAATGCTAAAAAGGAGCTGGTTAGACTGGTGCGTGAG
AGAGTGCCCGGGCAGTAGTGTATCGGTAGCTAAAGGTAGCTCCATCTCAC
AAAAACTTCTCAATTCCCAACCCCCTCCCTCTTCAATTTTCTGACATAGA
AATACCAGGTACGCTGCAAGGCTGCCGGTGCGGTCATTTTCACCTGGTGG
AAATGTCGGTGGCAGGTCTTGCAAGCCAAACGGTTGCGGCAGGCCCTACT
TGTGGAGCGGCAACGGCAGAAAGCCCAAGCTCGACTTAAGGTGGCCCTCT
TTGGACAATCCCATTTCCGGCGCCGACGAGACCATCGCTGGGTGGCGACA
ATGCGGCGTCGGAGGATGCAGGAAGAAGCCTTGGCAGCAGCCGCAGCGGC
AGCAGCATCAGCAGCATGGGAGGAGGAGTTGGAACGGCGGCGGCGAAGGC
GGAGGGAGCTGCATGACCGACCGTTTCGTTGAAATAAAAATGTTTAATGT
GTTTGACTTTGCTAATTCAAAGTGTTATTGTTTTGATGTACAAAAATTCG
CACTACATATGACGAGTTTGGGCTGGAAGTGTTGGAAGAAGAATTGTTGG
GAATGCAAAGAAAAAAAGCGGGATAACGGACACATCAATCAGATCGACGG
ATGGCGACCACGCCTTGCTTTCATTTCTTTAACTTTACGTGGAGGCTACA
ATACGACTGTGTATGCATTTGAGTCAACTTTTGCCTGCCATTCTTTCCTG
CAGTGCCTTGATGCTGTCGACATTTTGAACAACCTCCCCCCCTCCTTTCC
CCCTCCTTCATCCCTCATACAGGGCACGACGATCCTTCCAAACTCTACAC
CCCCTCGCATACTTCAAGAATGTGCCATAGCTGCAAGTGCCTCATTGGCC
CCTCCATGCTAGCCAGCGACTTGTCGTGCATGGCCGCTGAGGCGCAAAAG
GTGGTGGCGGGTGGCGCAGACTACCTGCACTTAGACGTGATGGACGGTCA
TTTCGTGCCCAACATTACATGGGGGGCCCCAGTAATCAAGCACTTAAGAA
AGCACTGTCCTGGCGTTTTTTTTGACTGTCACATGATGGTGAGCAACCCC
GAGCAATGGGTGGAGGAAATCAAGGATGCCGGTGGAGATCAGTACACATT
CCACCTCGAATCTACCAAGGACCCCGCTGCCCTAATCAAGCAAATTCTGG
CCTCAGGGATGAAGGTCGGTATTGCCCTTCGCCCTGGCACGCCTGTGAAA
GATGTATTGCCCTGGGTTGATCTTGTGGACATGGTTTTAATCATGACGGT
GGAACCGGGCTTTGGGGGGCAGAAATTTAAGGCGGACATGATGCCCAAGG
TGGCGCTTCTCCGGGAAAAATACCCAGAAAAAGACATTGGAGTCGATGGA
GGGCTCGGACCTTCGACTATCGAAGCAGCGGCCGACGCGGGAGCTAATAT
GATAGTGGCTGGGAGCTCCGTTTTCAAGAGTCCGGCGCCTGCCCAGGTGA
TCGCAACGTTGCGAAGGGCTGTGGAGAGGCTTGGGAATGGGAAAAAGGAG
GAGGAGCTGACGCCCTTGCCTCCGGCATAAGAGGGGAGATACGTAGAGAC
GAGGGATGAAGGGTAAGTTTCCCGAGTAGCTTCAAAATACAACATAAAAT
CAAAGTGTTTGGGGAGAAATAAAGGAGGGATGGAAGGATGGGCACGACAT
GACAAAAGGTTT back to topCoding sequence (CDS) from alignment at scaffold_12:427245..429956+ >mRNA_5089 ID=mRNA_5089|Name=jgi.p|Nanoce1779_2|542570|organism=Nannochloropsis oceanica|type=CDS|length=4284bp|location=Sequence derived from alignment at scaffold_12:427245..429956+ (Nannochloropsis oceanica)
ATGAGCTTGGGTTCTTCCTATTTGCCTCGTCGCCGCCGCCCTTCCCAGCC
CACGGCCCCTCCACTTCTCCACACATCCCAGGCCATACAGCTGACGTACA
GGAGCGCCTCTTTGGAGGTATCGATCTACGTTCGTCCCCTGCCCTCTCAA
TTCACCCCGTCCCTAGGCTGGGATGAACAGTGGGCCGCTCGGCGGGATCG
TTTGCGGCGACTCCCACCACGCGTCCCGCCCTCCCAGCTGCACCCACCAC
GAGCGCCCTTGGCGCCTCCCCCATCGTCGTCCTCATCCTCTAATTCTGCC
TCAACAGGCTTTTTGGTGCCCTACACAAATGAATTCCATCGTGTCACGAA
CTTCACCTCCTCCTTTACTGGCCTTTACCGTGATACGACCCTCTCCGGGG
TGGCCGTACACAATGAGCGGCTGCGACGTCACATGGCTATGCAAGAGAAT
CGTCTCGAACGACGACAGATGAAGTGCATTCAGATGCAGAGCCTGGCGGC
CAGGTATCAGCACCGAGCCGACCACCTGCGACAACAGCTGCGGGACGATC
GGCAACGAAAGTACACCTGCCTTGTCTCGGCCGTGCGGCGCCTCCAAGCC
GTCTTCCGTCTACAACAACACTTGCGGAGAAAGAAAGCAAAAGAGCTTTG
CGTTGCCAATGAGGCCGCAATGGTGGTTCAAGACTTTGGGAAGCGAGCTA
TGGCAATCGTAAATGCTAAAAAGGAGCTGGTTAGACTGAAATACCAGGTA
CGCTGCAAGGCTGCCGGTGCGGTCATTTTCACCTGGTGGAAATGTCGGTG
GCAGGTCTTGCAAGCCAAACGGTTGCGGCAGGCCCTACTTGTGGAGCGGC
AACGGCAGAAAGCCCAAGCTCGACTTAAGGTGGCCCTCTTTGGACAATCC
CATTTCCGGCGCCGACGAGACCATCGCTGGGTGGCGACAATGCGGCGTCG
GAGGATGCAGGAAGAAGCCTTGGCAGCAGCCGCAGCGGCAGCAGCATCAG
CAGCATGGGAGGAGGAGTTGGAACGGCGGCGGCGAAGGCGGAGGGAGCTG
CATGACCGACCGTTTCGTTGAATGAGCTTGGGTTCTTCCTATTTGCCTCG
TCGCCGCCGCCCTTCCCAGCCCACGGCCCCTCCACTTCTCCACACATCCC
AGGCCATACAGCTGACGTACAGGAGCGCCTCTTTGGAGGTATCGATCTAC
GTTCGTCCCCTGCCCTCTCAATTCACCCCGTCCCTAGGCTGGGATGAACA
GTGGGCCGCTCGGCGGGATCGTTTGCGGCGACTCCCACCACGCGTCCCGC
CCTCCCAGCTGCACCCACCACGAGCGCCCTTGGCGCCTCCCCCATCGTCG
TCCTCATCCTCTAATTCTGCCTCAACAGGCTTTTTGGTGCCCTACACAAA
TGAATTCCATCGTGTCACGAACTTCACCTCCTCCTTTACTGGCCTTTACC
GTGATACGACCCTCTCCGGGGTGGCCGTACACAATGAGCGGCTGCGACGT
CACATGGCTATGCAAGAGAATCGTCTCGAACGACGACAGATGAAGTGCAT
TCAGATGCAGAGCCTGGCGGCCAGGTATCAGCACCGAGCCGACCACCTGC
GACAACAGCTGCGGGACGATCGGCAACGAAAGTACACCTGCCTTGTCTCG
GCCGTGCGGCGCCTCCAAGCCGTCTTCCGTCTACAACAACACTTGCGGAG
AAAGAAAGCAAAAGAGCTTTGCGTTGCCAATGAGGCCGCAATGGTGGTTC
AAGACTTTGGGAAGCGAGCTATGGCAATCGTAAATGCTAAAAAGGAGCTG
GTTAGACTGAAATACCAGGTACGCTGCAAGGCTGCCGGTGCGGTCATTTT
CACCTGGTGGAAATGTCGGTGGCAGGTCTTGCAAGCCAAACGGTTGCGGC
AGGCCCTACTTGTGGAGCGGCAACGGCAGAAAGCCCAAGCTCGACTTAAG
GTGGCCCTCTTTGGACAATCCCATTTCCGGCGCCGACGAGACCATCGCTG
GGTGGCGACAATGCGGCGTCGGAGGATGCAGGAAGAAGCCTTGGCAGCAG
CCGCAGCGGCAGCAGCATCAGCAGCATGGGAGGAGGAGTTGGAACGGCGG
CGGCGAAGGCGGAGGGAGCTGCATGACCGACCGTTTCGTTGAATGAGCTT
GGGTTCTTCCTATTTGCCTCGTCGCCGCCGCCCTTCCCAGCCCACGGCCC
CTCCACTTCTCCACACATCCCAGGCCATACAGCTGACGTACAGGAGCGCC
TCTTTGGAGGTATCGATCTACGTTCGTCCCCTGCCCTCTCAATTCACCCC
GTCCCTAGGCTGGGATGAACAGTGGGCCGCTCGGCGGGATCGTTTGCGGC
GACTCCCACCACGCGTCCCGCCCTCCCAGCTGCACCCACCACGAGCGCCC
TTGGCGCCTCCCCCATCGTCGTCCTCATCCTCTAATTCTGCCTCAACAGG
CTTTTTGGTGCCCTACACAAATGAATTCCATCGTGTCACGAACTTCACCT
CCTCCTTTACTGGCCTTTACCGTGATACGACCCTCTCCGGGGTGGCCGTA
CACAATGAGCGGCTGCGACGTCACATGGCTATGCAAGAGAATCGTCTCGA
ACGACGACAGATGAAGTGCATTCAGATGCAGAGCCTGGCGGCCAGGTATC
AGCACCGAGCCGACCACCTGCGACAACAGCTGCGGGACGATCGGCAACGA
AAGTACACCTGCCTTGTCTCGGCCGTGCGGCGCCTCCAAGCCGTCTTCCG
TCTACAACAACACTTGCGGAGAAAGAAAGCAAAAGAGCTTTGCGTTGCCA
ATGAGGCCGCAATGGTGGTTCAAGACTTTGGGAAGCGAGCTATGGCAATC
GTAAATGCTAAAAAGGAGCTGGTTAGACTGAAATACCAGGTACGCTGCAA
GGCTGCCGGTGCGGTCATTTTCACCTGGTGGAAATGTCGGTGGCAGGTCT
TGCAAGCCAAACGGTTGCGGCAGGCCCTACTTGTGGAGCGGCAACGGCAG
AAAGCCCAAGCTCGACTTAAGGTGGCCCTCTTTGGACAATCCCATTTCCG
GCGCCGACGAGACCATCGCTGGGTGGCGACAATGCGGCGTCGGAGGATGC
AGGAAGAAGCCTTGGCAGCAGCCGCAGCGGCAGCAGCATCAGCAGCATGG
GAGGAGGAGTTGGAACGGCGGCGGCGAAGGCGGAGGGAGCTGCATGACCG
ACCGTTTCGTTGAATGAGCTTGGGTTCTTCCTATTTGCCTCGTCGCCGCC
GCCCTTCCCAGCCCACGGCCCCTCCACTTCTCCACACATCCCAGGCCATA
CAGCTGACGTACAGGAGCGCCTCTTTGGAGGTATCGATCTACGTTCGTCC
CCTGCCCTCTCAATTCACCCCGTCCCTAGGCTGGGATGAACAGTGGGCCG
CTCGGCGGGATCGTTTGCGGCGACTCCCACCACGCGTCCCGCCCTCCCAG
CTGCACCCACCACGAGCGCCCTTGGCGCCTCCCCCATCGTCGTCCTCATC
CTCTAATTCTGCCTCAACAGGCTTTTTGGTGCCCTACACAAATGAATTCC
ATCGTGTCACGAACTTCACCTCCTCCTTTACTGGCCTTTACCGTGATACG
ACCCTCTCCGGGGTGGCCGTACACAATGAGCGGCTGCGACGTCACATGGC
TATGCAAGAGAATCGTCTCGAACGACGACAGATGAAGTGCATTCAGATGC
AGAGCCTGGCGGCCAGGTATCAGCACCGAGCCGACCACCTGCGACAACAG
CTGCGGGACGATCGGCAACGAAAGTACACCTGCCTTGTCTCGGCCGTGCG
GCGCCTCCAAGCCGTCTTCCGTCTACAACAACACTTGCGGAGAAAGAAAG
CAAAAGAGCTTTGCGTTGCCAATGAGGCCGCAATGGTGGTTCAAGACTTT
GGGAAGCGAGCTATGGCAATCGTAAATGCTAAAAAGGAGCTGGTTAGACT
GAAATACCAGGTACGCTGCAAGGCTGCCGGTGCGGTCATTTTCACCTGGT
GGAAATGTCGGTGGCAGGTCTTGCAAGCCAAACGGTTGCGGCAGGCCCTA
CTTGTGGAGCGGCAACGGCAGAAAGCCCAAGCTCGACTTAAGGTGGCCCT
CTTTGGACAATCCCATTTCCGGCGCCGACGAGACCATCGCTGGGTGGCGA
CAATGCGGCGTCGGAGGATGCAGGAAGAAGCCTTGGCAGCAGCCGCAGCG
GCAGCAGCATCAGCAGCATGGGAGGAGGAGTTGGAACGGCGGCGGCGAAG
GCGGAGGGAGCTGCATGACCGACCGTTTCGTTGA back to top
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