jgi.p|Nanoce1779_2|591348, mRNA_5088 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591348
Unique NamemRNA_5088
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length843
Alignment locationscaffold_12:426160..427002 +

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Properties
Property NameValue
TranscriptId591434
TrackFilteredModels2
ProteinId591348
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:426160..427002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591348gene_5088Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591348mRNA_5088-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5088CDS_5088Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5088 ID=mRNA_5088|Name=jgi.p|Nanoce1779_2|591348|organism=Nannochloropsis oceanica|type=mRNA|length=843bp
TTTCTCTTTTTTGTTCGAATGCGAATACATTAATCACCACTTCATTTTCA
ATCGTGTTTCTTGTATGTTCTCCGCTTGCCTCACTCGCTCCTTCAATATC
TCGCTTATTTGTCTGTGTCGCCCCCAAAGAGGCAAGCGATGCCAGCACTT
CTTCCATGAGAGATACACACCTCCTTACTTCATCCAAAACTCATGTTTGC
TGTGCCTATCTTTCCAAGCCAGTAGTTTTTGCATCATATCCTCCGGAACG
GTGTGCCCCAGGATCTCGCACAGTTCCTGCTTTGCTACGTCTTGCGTTTT
TTCCTTTTCGGCCACCTTTTCCGCAAATTGCTCCATTGTCTTCTTGTTCG
CGTTGTACATGAATTGCTTCTCCAACGCCTCTTCTTTATCCTCAAACGAT
GAGCGGTGGTCGCCAAAGGCTCGGGCCGCAGTAGTAGTTAGGGCACACAG
GACAGAGGGCACCGCGAGCTGCCGGCCTGGTGTCAGCAGTAGCCTGCGCA
GAGCCATGATAAGTTTTGACGAGAGGCTTCCTGTCGGGAAAGGCATGTAC
GTACCGAGAGGAAATTTTAAGATTCCATGATATTGCTGTGAACTTCAATA
GCCCGTGCTTAGACAAGAGGGGAATGTCAAATTGTCAAAGCCAGGGGAGA
GAGATGTCTGTGTACACAGGTGTGTATGTTGCCTCATAAAAAGGGGGAGG
TGGGAGGCAACTTCTCATGGCGAAAGCAAATGGTATGCAAAGCTCATATT
ATAAGATTCAAGGCTTTTCGGTTGCCATCTTTCTCAATATCGCAAGGGCA
ACGAAGCAATACAAGTGAAGCATAACAGAACAGAACACCGCCA
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protein sequence of jgi.p|Nanoce1779_2|591348

>mRNA_5088-protein ID=mRNA_5088-protein|Name=jgi.p|Nanoce1779_2|591348|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MFSACLTRSFNISLICLCRPQRGKRCQHFFHERYTPPYFIQNSCLLCLSF
QASSFCIISSGTVCPRISHSSCFATSCVFSFSATFSANCSIVFLFALYMN
CFSNASSLSSNDERWSPKARAAVVVRAHRTEGTASCRPGVSSSLRRAMIS
FDERLPVGKGMYVPRGNFKIP*
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mRNA from alignment at scaffold_12:426160..427002+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5088 ID=mRNA_5088|Name=jgi.p|Nanoce1779_2|591348|organism=Nannochloropsis oceanica|type=mRNA|length=843bp|location=Sequence derived from alignment at scaffold_12:426160..427002+ (Nannochloropsis oceanica)
TTTCTCTTTTTTGTTCGAATGCGAATACATTAATCACCACTTCATTTTCA
ATCGTGTTTCTTGTATGTTCTCCGCTTGCCTCACTCGCTCCTTCAATATC
TCGCTTATTTGTCTGTGTCGCCCCCAAAGAGGCAAGCGATGCCAGCACTT
CTTCCATGAGAGATACACACCTCCTTACTTCATCCAAAACTCATGTTTGC
TGTGCCTATCTTTCCAAGCCAGTAGTTTTTGCATCATATCCTCCGGAACG
GTGTGCCCCAGGATCTCGCACAGTTCCTGCTTTGCTACGTCTTGCGTTTT
TTCCTTTTCGGCCACCTTTTCCGCAAATTGCTCCATTGTCTTCTTGTTCG
CGTTGTACATGAATTGCTTCTCCAACGCCTCTTCTTTATCCTCAAACGAT
GAGCGGTGGTCGCCAAAGGCTCGGGCCGCAGTAGTAGTTAGGGCACACAG
GACAGAGGGCACCGCGAGCTGCCGGCCTGGTGTCAGCAGTAGCCTGCGCA
GAGCCATGATAAGTTTTGACGAGAGGCTTCCTGTCGGGAAAGGCATGTAC
GTACCGAGAGGAAATTTTAAGATTCCATGATATTGCTGTGAACTTCAATA
GCCCGTGCTTAGACAAGAGGGGAATGTCAAATTGTCAAAGCCAGGGGAGA
GAGATGTCTGTGTACACAGGTGTGTATGTTGCCTCATAAAAAGGGGGAGG
TGGGAGGCAACTTCTCATGGCGAAAGCAAATGGTATGCAAAGCTCATATT
ATAAGATTCAAGGCTTTTCGGTTGCCATCTTTCTCAATATCGCAAGGGCA
ACGAAGCAATACAAGTGAAGCATAACAGAACAGAACACCGCCA
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Coding sequence (CDS) from alignment at scaffold_12:426160..427002+

>mRNA_5088 ID=mRNA_5088|Name=jgi.p|Nanoce1779_2|591348|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_12:426160..427002+ (Nannochloropsis oceanica)
ATGTTCTCCGCTTGCCTCACTCGCTCCTTCAATATCTCGCTTATTTGTCT
GTGTCGCCCCCAAAGAGGCAAGCGATGCCAGCACTTCTTCCATGAGAGAT
ACACACCTCCTTACTTCATCCAAAACTCATGTTTGCTGTGCCTATCTTTC
CAAGCCAGTAGTTTTTGCATCATATCCTCCGGAACGGTGTGCCCCAGGAT
CTCGCACAGTTCCTGCTTTGCTACGTCTTGCGTTTTTTCCTTTTCGGCCA
CCTTTTCCGCAAATTGCTCCATTGTCTTCTTGTTCGCGTTGTACATGAAT
TGCTTCTCCAACGCCTCTTCTTTATCCTCAAACGATGAGCGGTGGTCGCC
AAAGGCTCGGGCCGCAGTAGTAGTTAGGGCACACAGGACAGAGGGCACCG
CGAGCTGCCGGCCTGGTGTCAGCAGTAGCCTGCGCAGAGCCATGATAAGT
TTTGACGAGAGGCTTCCTGTCGGGAAAGGCATGTACGTACCGAGAGGAAA
TTTTAAGATTCCATGA
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Synonyms
Publications