jgi.p|Nanoce1779_2|528953, mRNA_5085 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|528953
Unique Name	mRNA_5085
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1428
Alignment location	scaffold_12:416687..418214 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	529039
Track	FilteredModels2
ProteinId	528953

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:416687..418214 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528953	gene_5085	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528953	mRNA_5085-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5085	CDS_5085	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:416687..418214+
coding sequence from alignment at scaffold_12:416687..418214+

mRNA sequence

>mRNA_5085 ID=mRNA_5085|Name=jgi.p|Nanoce1779_2|528953|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp
ATGCTTTTTGCAATCCGCAGGGCTTTTTACGTTGCCTATGTATTTCTGCC
CGTCGCCGGGGTGGGGGTGCTCTCGGCGTATGTATTCCCTGAGTCTGAGG
TTTGGCGGGAGCGGTTTTTGACGGCTCTGATTCGAGCGATGGAGAAGGCA
GGATGTTGTTTCATGAAGTTGGGTCAGTGGATAAGTATGCGCCCGGACAT
GTTCTCGCGAGATGTAGTCAAAACAATGGCGAGGTTAAGGGATGGTGTGC
CAGAACACCCATTCAAATTTACGGAGAAGACGATCAGGCAGAGTTTCAAA
AAAGAGATTGGGGACGTCTTTGAGTGGTTTGAAGAAACTCCCATCGCATC
TGGGACGGTTGCGCAGGTGTACCGTGCTCGGTTGAAGCCTGAGTATGCGA
TTCATGGCACTATCCAAGATGTGGCTGTGAAAGTCCGCCATCCGAATATA
TTGAACGAGACATTCTTAGATCTCGATTTGATATTCGGGTTTGTCGACTC
CTGTTTCCCTGAGAAATATTCCATGCCCTGTTCCCAAGATGAGCTCACCC
ATATCTTGCGGCAGCAACTAGACTTGAAATGGGAGGCGTACAATTTGTAC
AAATTTTCGACAAATTTCAGGCACGAGCTACAGTCAGGGTTAGTGCATTT
TCCGCAGGTGAGTAAAGAGCTATGCTCCGACTCGGTGTTGGTGGAGAGCT
GGGTGGAGGGGGCGACAATTGCGACTGTCTTTTCGGATATCGAAGGGGGG
GGGGATCACACCTGGAGCGCGATGATGGCAAAGAAAAAGCAGTTGGCCAA
AGTATTGTTCGACATGAACGTGAAAATGTTTTTAAGGGATAACTACGTGC
ATGGGGACATGCATGCGGGGAATTTGATTGTGTCGATGGAGGACGGCCGG
GTCACAGTCATCGACGCGGGGTTGATTACGTCCTTGAAGTCAGATGTTGC
TAATCCGTTCGGGGACTTCCTGAGGGGGTTGTGTAACTCAGATGTGGATG
TGATTGTGGATAAGATATTGGAATTTAACGTGGGGAAAGTGGAGGTGGAT
GAGGTGGGGTTTAGGAAGAAAATTGAGGAGATAACGGATCATTTTAAGAC
TAAGGAAGCTGCGTTCGCATTGGGTGATGTGGTGGGGGAAATTCTCTTAA
ATTTGCAGAAGTTCAAGATCGTGTTGAGAGGGGATGTGGCCGCTTCGATT
ATGACGATTTCTGTGTCGGAAGGTTTGATATTGCAGTTGGATCCGGATTT
CGATATGGTCCGGCAGGCGTTGCCTTTCTTTGTAAGGTACAAAGGATGGA
GCACGGCGGAGGCCGTCATGCGGGGAGGAGGGTCGAAGTCCAAGTCCAAG
ACTTCTCTTTCTTCCTCTTCTCCTCCTCCGTCAGAGACAGTAGAGGCTGC
TGCGACGCTCTCGGCGGCGCCTGCGTAG

protein sequence of jgi.p|Nanoce1779_2|528953

>mRNA_5085-protein ID=mRNA_5085-protein|Name=jgi.p|Nanoce1779_2|528953|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MLFAIRRAFYVAYVFLPVAGVGVLSAYVFPESEVWRERFLTALIRAMEKA
GCCFMKLGQWISMRPDMFSRDVVKTMARLRDGVPEHPFKFTEKTIRQSFK
KEIGDVFEWFEETPIASGTVAQVYRARLKPEYAIHGTIQDVAVKVRHPNI
LNETFLDLDLIFGFVDSCFPEKYSMPCSQDELTHILRQQLDLKWEAYNLY
KFSTNFRHELQSGLVHFPQVSKELCSDSVLVESWVEGATIATVFSDIEGG
GDHTWSAMMAKKKQLAKVLFDMNVKMFLRDNYVHGDMHAGNLIVSMEDGR
VTVIDAGLITSLKSDVANPFGDFLRGLCNSDVDVIVDKILEFNVGKVEVD
EVGFRKKIEEITDHFKTKEAAFALGDVVGEILLNLQKFKIVLRGDVAASI
MTISVSEGLILQLDPDFDMVRQALPFFVRYKGWSTAEAVMRGGGSKSKSK
TSLSSSSPPPSETVEAAATLSAAPA*

mRNA from alignment at scaffold_12:416687..418214+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5085 ID=mRNA_5085|Name=jgi.p|Nanoce1779_2|528953|organism=Nannochloropsis oceanica|type=mRNA|length=1528bp|location=Sequence derived from alignment at scaffold_12:416687..418214+ (Nannochloropsis oceanica)
ATGCTTTTTGCAATCCGCAGGGCTTTTTACGTTGCCTATGTATTTCTGCC
CGTCGCCGGGGTGGGGGTGCTCTCGGCGTATGTATTCCCTGAGTCTGAGG
TTTGGCGGGAGCGGTTTTTGACGGCTCTGATTCGAGCGATGGAGAAGGCA
GGATGTTGTTTCATGAAGTTGGGTCAGTGGATAAGTATGCGCCCGGACAT
GTTCTCGCGAGATGTAGTCAAAACAATGGCGAGGTTAAGGGATGGTGTGC
CAGAACACCCATTCAAATTTACGGAGAAGACGATCAGGCAGAGTTTCAAA
AAAGAGATTGGGGACGTCTTTGAGTGGTTTGAAGAAACTCCCATCGCATC
TGGGACGGTTGCGCAGGTGTACCGTGCTCGGTTGAAGCCTGAGTATGCGA
TTCATGGCACTATCCAAGATGTGGCTGTGAAAGTCCGCCATCCGAATATA
TTGAACGAGACATTCTTAGATCTCGATTTGATATTCGGGTTTGTCGACTC
CTGTTTCCCTGAGAAATATTCCATGCCCTGTTCCCAAGATGAGCTCACCC
ATATCTTGCGGCAGCAACTAGACTTGAAATGGGAGGCGTACAATTTGTAC
AAATTTTCGACAAATTTCAGGCACGAGCTACAGTCAGGGTTAGTGCATTT
TCCGCAGGTGAGTAAAGAGCTATGCTCCGACTCGGTGTTGGTGGAGAGCT
GGGTGGAGGGGGCGACAATTGCGACTGTCTTTTCGGATATCGAAGGGGGG
GGGGATCACACCTGGAGCGCGAGTAAGACTCTTTCGGATAATTTCTCCGA
GGCAGTGATGGCAAAGAAAAAGCAGTTGGCCAAAGTATTGTTCGACATGA
ACGTGAAAATGTTTTTAAGGGATAACTACGTGCATGGGGACATGCATGCG
GGGAATTTGATTGTGTCGATGGAGGACGGCCGGGTCACAGTCATCGACGC
GGGGTTGATTACGTCCTTGAAGTCAGATGTTGCTAATCCGTTCGGGGACT
TCCTGAGGGGGTTGTGTAACTCAGATGTGGATGTGATTGTGGATAAGATA
TTGGAATTTAACGTGGGGAAAGTGGAGGTGGATGAGGTGGGGTTTAGGAA
GAAAATTGAGGAGATAACGGATCATTTTAAGACTAAGGAAGCTGCGGTTG
GGGGAAACGGGGGGGGGGGGGGGAAAGGGGATTGATGTGAATGGGAAGAA
GGACGAGGGGAAGTTCGCATTGGGTGATGTGGTGGGGGAAATTCTCTTAA
ATTTGCAGAAGTTCAAGATCGTGTTGAGAGGGGATGTGGCCGCTTCGATT
ATGACGATTTCTGTGTCGGAAGGTTTGATATTGCAGTTGGATCCGGATTT
CGATATGGTCCGGCAGGCGTTGCCTTTCTTTGTAAGGTACAAAGGATGGA
GCACGGCGGAGGCCGTCATGCGGGGAGGAGGGTCGAAGTCCAAGTCCAAG
ACTTCTCTTTCTTCCTCTTCTCCTCCTCCGTCAGAGACAGTAGAGGCTGC
TGCGACGCTCTCGGCGGCGCCTGCGTAG

Coding sequence (CDS) from alignment at scaffold_12:416687..418214+

>mRNA_5085 ID=mRNA_5085|Name=jgi.p|Nanoce1779_2|528953|organism=Nannochloropsis oceanica|type=CDS|length=4284bp|location=Sequence derived from alignment at scaffold_12:416687..418214+ (Nannochloropsis oceanica)
ATGCTTTTTGCAATCCGCAGGGCTTTTTACGTTGCCTATGTATTTCTGCC
CGTCGCCGGGGTGGGGGTGCTCTCGGCGTATGTATTCCCTGAGTCTGAGG
TTTGGCGGGAGCGGTTTTTGACGGCTCTGATTCGAGCGATGGAGAAGGCA
GGATGTTGTTTCATGAAGTTGGGTCAGTGGATAAGTATGCGCCCGGACAT
GTTCTCGCGAGATGTAGTCAAAACAATGGCGAGGTTAAGGGATGGTGTGC
CAGAACACCCATTCAAATTTACGGAGAAGACGATCAGGCAGAGTTTCAAA
AAAGAGATTGGGGACGTCTTTGAGTGGTTTGAAGAAACTCCCATCGCATC
TGGGACGGTTGCGCAGGTGTACCGTGCTCGGTTGAAGCCTGAGTATGCGA
TTCATGGCACTATCCAAGATGTGGCTGTGAAAGTCCGCCATCCGAATATA
TTGAACGAGACATTCTTAGATCTCGATTTGATATTCGGGTTTGTCGACTC
CTGTTTCCCTGAGAAATATTCCATGCCCTGTTCCCAAGATGAGCTCACCC
ATATCTTGCGGCAGCAACTAGACTTGAAATGGGAGGCGTACAATTTGTAC
AAATTTTCGACAAATTTCAGGCACGAGCTACAGTCAGGGTTAGTGCATTT
TCCGCAGGTGAGTAAAGAGCTATGCTCCGACTCGGTGTTGGTGGAGAGCT
GGGTGGAGGGGGCGACAATTGCGACTGTCTTTTCGGATATCGAAGGGGGG
GGGGATCACACCTGGAGCGCGATGATGGCAAAGAAAAAGCAGTTGGCCAA
AGTATTGTTCGACATGAACGTGAAAATGTTTTTAAGGGATAACTACGTGC
ATGGGGACATGCATGCGGGGAATTTGATTGTGTCGATGGAGGACGGCCGG
GTCACAGTCATCGACGCGGGGTTGATTACGTCCTTGAAGTCAGATGTTGC
TAATCCGTTCGGGGACTTCCTGAGGGGGTTGTGTAACTCAGATGTGGATG
TGATTGTGGATAAGATATTGGAATTTAACGTGGGGAAAGTGGAGGTGGAT
GAGGTGGGGTTTAGGAAGAAAATTGAGGAGATAACGGATCATTTTAAGAC
TAAGGAAGCTGCGTTCGCATTGGGTGATGTGGTGGGGGAAATTCTCTTAA
ATTTGCAGAAGTTCAAGATCGTGTTGAGAGGGGATGTGGCCGCTTCGATT
ATGACGATTTCTGTGTCGGAAGGTTTGATATTGCAGTTGGATCCGGATTT
CGATATGGTCCGGCAGGCGTTGCCTTTCTTTGTAAGGTACAAAGGATGGA
GCACGGCGGAGGCCGTCATGCGGGGAGGAGGGTCGAAGTCCAAGTCCAAG
ACTTCTCTTTCTTCCTCTTCTCCTCCTCCGTCAGAGACAGTAGAGGCTGC
TGCGACGCTCTCGGCGGCGCCTGCGTAGATGCTTTTTGCAATCCGCAGGG
CTTTTTACGTTGCCTATGTATTTCTGCCCGTCGCCGGGGTGGGGGTGCTC
TCGGCGTATGTATTCCCTGAGTCTGAGGTTTGGCGGGAGCGGTTTTTGAC
GGCTCTGATTCGAGCGATGGAGAAGGCAGGATGTTGTTTCATGAAGTTGG
GTCAGTGGATAAGTATGCGCCCGGACATGTTCTCGCGAGATGTAGTCAAA
ACAATGGCGAGGTTAAGGGATGGTGTGCCAGAACACCCATTCAAATTTAC
GGAGAAGACGATCAGGCAGAGTTTCAAAAAAGAGATTGGGGACGTCTTTG
AGTGGTTTGAAGAAACTCCCATCGCATCTGGGACGGTTGCGCAGGTGTAC
CGTGCTCGGTTGAAGCCTGAGTATGCGATTCATGGCACTATCCAAGATGT
GGCTGTGAAAGTCCGCCATCCGAATATATTGAACGAGACATTCTTAGATC
TCGATTTGATATTCGGGTTTGTCGACTCCTGTTTCCCTGAGAAATATTCC
ATGCCCTGTTCCCAAGATGAGCTCACCCATATCTTGCGGCAGCAACTAGA
CTTGAAATGGGAGGCGTACAATTTGTACAAATTTTCGACAAATTTCAGGC
ACGAGCTACAGTCAGGGTTAGTGCATTTTCCGCAGGTGAGTAAAGAGCTA
TGCTCCGACTCGGTGTTGGTGGAGAGCTGGGTGGAGGGGGCGACAATTGC
GACTGTCTTTTCGGATATCGAAGGGGGGGGGGATCACACCTGGAGCGCGA
TGATGGCAAAGAAAAAGCAGTTGGCCAAAGTATTGTTCGACATGAACGTG
AAAATGTTTTTAAGGGATAACTACGTGCATGGGGACATGCATGCGGGGAA
TTTGATTGTGTCGATGGAGGACGGCCGGGTCACAGTCATCGACGCGGGGT
TGATTACGTCCTTGAAGTCAGATGTTGCTAATCCGTTCGGGGACTTCCTG
AGGGGGTTGTGTAACTCAGATGTGGATGTGATTGTGGATAAGATATTGGA
ATTTAACGTGGGGAAAGTGGAGGTGGATGAGGTGGGGTTTAGGAAGAAAA
TTGAGGAGATAACGGATCATTTTAAGACTAAGGAAGCTGCGTTCGCATTG
GGTGATGTGGTGGGGGAAATTCTCTTAAATTTGCAGAAGTTCAAGATCGT
GTTGAGAGGGGATGTGGCCGCTTCGATTATGACGATTTCTGTGTCGGAAG
GTTTGATATTGCAGTTGGATCCGGATTTCGATATGGTCCGGCAGGCGTTG
CCTTTCTTTGTAAGGTACAAAGGATGGAGCACGGCGGAGGCCGTCATGCG
GGGAGGAGGGTCGAAGTCCAAGTCCAAGACTTCTCTTTCTTCCTCTTCTC
CTCCTCCGTCAGAGACAGTAGAGGCTGCTGCGACGCTCTCGGCGGCGCCT
GCGTAGATGCTTTTTGCAATCCGCAGGGCTTTTTACGTTGCCTATGTATT
TCTGCCCGTCGCCGGGGTGGGGGTGCTCTCGGCGTATGTATTCCCTGAGT
CTGAGGTTTGGCGGGAGCGGTTTTTGACGGCTCTGATTCGAGCGATGGAG
AAGGCAGGATGTTGTTTCATGAAGTTGGGTCAGTGGATAAGTATGCGCCC
GGACATGTTCTCGCGAGATGTAGTCAAAACAATGGCGAGGTTAAGGGATG
GTGTGCCAGAACACCCATTCAAATTTACGGAGAAGACGATCAGGCAGAGT
TTCAAAAAAGAGATTGGGGACGTCTTTGAGTGGTTTGAAGAAACTCCCAT
CGCATCTGGGACGGTTGCGCAGGTGTACCGTGCTCGGTTGAAGCCTGAGT
ATGCGATTCATGGCACTATCCAAGATGTGGCTGTGAAAGTCCGCCATCCG
AATATATTGAACGAGACATTCTTAGATCTCGATTTGATATTCGGGTTTGT
CGACTCCTGTTTCCCTGAGAAATATTCCATGCCCTGTTCCCAAGATGAGC
TCACCCATATCTTGCGGCAGCAACTAGACTTGAAATGGGAGGCGTACAAT
TTGTACAAATTTTCGACAAATTTCAGGCACGAGCTACAGTCAGGGTTAGT
GCATTTTCCGCAGGTGAGTAAAGAGCTATGCTCCGACTCGGTGTTGGTGG
AGAGCTGGGTGGAGGGGGCGACAATTGCGACTGTCTTTTCGGATATCGAA
GGGGGGGGGGATCACACCTGGAGCGCGATGATGGCAAAGAAAAAGCAGTT
GGCCAAAGTATTGTTCGACATGAACGTGAAAATGTTTTTAAGGGATAACT
ACGTGCATGGGGACATGCATGCGGGGAATTTGATTGTGTCGATGGAGGAC
GGCCGGGTCACAGTCATCGACGCGGGGTTGATTACGTCCTTGAAGTCAGA
TGTTGCTAATCCGTTCGGGGACTTCCTGAGGGGGTTGTGTAACTCAGATG
TGGATGTGATTGTGGATAAGATATTGGAATTTAACGTGGGGAAAGTGGAG
GTGGATGAGGTGGGGTTTAGGAAGAAAATTGAGGAGATAACGGATCATTT
TAAGACTAAGGAAGCTGCGTTCGCATTGGGTGATGTGGTGGGGGAAATTC
TCTTAAATTTGCAGAAGTTCAAGATCGTGTTGAGAGGGGATGTGGCCGCT
TCGATTATGACGATTTCTGTGTCGGAAGGTTTGATATTGCAGTTGGATCC
GGATTTCGATATGGTCCGGCAGGCGTTGCCTTTCTTTGTAAGGTACAAAG
GATGGAGCACGGCGGAGGCCGTCATGCGGGGAGGAGGGTCGAAGTCCAAG
TCCAAGACTTCTCTTTCTTCCTCTTCTCCTCCTCCGTCAGAGACAGTAGA
GGCTGCTGCGACGCTCTCGGCGGCGCCTGCGTAG

Synonyms

Publications