jgi.p|Nanoce1779_2|591335, mRNA_5084 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591335
Unique NamemRNA_5084
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1905
Alignment locationscaffold_12:415742..417840 -

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Properties
Property NameValue
TranscriptId591421
TrackFilteredModels2
ProteinId591335
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:415742..417840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591335gene_5084Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591335mRNA_5084-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5084CDS_5084Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5084 ID=mRNA_5084|Name=jgi.p|Nanoce1779_2|591335|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
CCCCCAACCGCAGCTTCCTTAGTCTTAAAATGATCCGTTATCTCCTCAAT
TTTCTTCCTAAACCCCACCTCATCCACCTCCACTTTCCCCACGTTAAATT
CCAATATCTTATCCACAATCACATCCACATCTGAGTTACACAACCCCCTC
AGGAAGTCCCCGAACGGATTAGCAACATCTGACTTCAAGGACGTAATCAA
CCCCGCGTCGATGACTGTGACCCGGCCGTCCTCCATCGACACAATCAAAT
TCCCCGCATGCATGTCCCCATGCACGTAGTTATCCCTTAAAAACATTTTC
ACGTTCATGTCGAACAATACTTTGGCCAACTGCTTTTTCTTTGCCATCAC
TGCCTCGGAGAAATTATCCGAAAGAGTCTTACTCGCGCTCCAGGTGTGAT
CCCCCCCCCCTTCGATATCCGAAAAGACAGTCGCAATTGTCGCCCCCTCC
ACCCAGCTCTCCACCAACACCGAGTCGGAGCATAGCTCTTTACTCACCTG
CGGAAAATGCACTAACCCTGACTGTAGCTCGTGCCTGAAATTTGTCGAAA
ATTTGTACAAATTGTACGCCTCCCATTTCAAGTCTAGTTGCTGCCGCAAG
ATATGGGTGAGCTCATCTTGGGAACAGGGCATGGAATATTTCTCAGGGAA
ACAGGAGTCGACAAACCCGAATATCAAATCGAGATCTAAGAATGTCTCGT
TCAATATATTCGGATGGCGGACTTTCACAGCCACATCTTGGATAGTGCCA
TGAATCGCATACTCAGGCTTCAACCGAGCACGGTACACCTGCGCAACCGT
CCCAGATGCGATGGGAGTTTCTTCAAACCACTCAAAGACGTCCCCAATCT
CTTTTTTGAAACTCTGCCTGATCGTCTTCTCCGTAAATTTGAATGGGTGT
TCTGGCACACCATCCCTTAACCTCGCCATTGTTTTGACTACATCTCGCGA
GAACATGTCCGGGCGCATACTTATCCACTGACCCAACTTCATGAAACAAC
ATCCTGCCTTCTCCATCGCTCGAATCAGAGCCGTCAAAAACCGCTCCCGC
CAAACCTCAGACTCAGGGAATACATACGCCGAGAGCACCCCCACCCCGGC
GACGGGCAGAAATACATAGGCAACGTAAAAAGCCCTGCGGATTGCAAAAA
GCATGCGCCACCACCACGGTTTTTCGATGTAAGGATGGACGAACTCCGGA
GGAGGAGGTTCCAAAGCGACAGAGGGGTCTTCCATGGCTCGCTTCAAGGC
CTCGTCTTCTTCCACAGCATAGTAATAAAATAGTCCGCCAAAAGCACCCG
AGGCGCCTAACACACCTCCCATGATTTTGAGCCCCATGTACTTGTCGGAC
TTGCCGGCAGCAGCAGCGACAGTGCTGGTGGTGGTGGGCGGGCTTTTTGT
AGGAGGGAAAGTGGTGATAGGTTTGGAGGTTGTACAGAGGCGTCCACGGA
CGGCTTGTCTTTGCGGGACGGGTTTTGAGTGGAAGGTCTTGAAAGCTCGC
GGCGCCCGCTGGGCATACTGCTGGCCGAGGACCGTTGTCCGGCAAGCCAG
CGGCTTCATTCGGAGAGCGGCACTAAACATGACTGGTTGCTTTAGGCCGG
GCCAGGATCGTGAAGAAGGGGGTGCGTGTCGTCCGCTTGTTGTGCTGCTT
CTAGACCCCACGGGAGACGAGGTGACGCAAAGGACGGCGGCGTTTGGCGC
AGCAGGATCGATTCAAGGAAATCACCTGAAGTCTGTGCATGTGGGGCCAA
GGATGCTGGTGAACTTGGTGGGCTGGTGTGGTGTGGTTACTAATACGTGT
CGTTCGGCCTTAATCAAAAGCGCGACTAAGCTGACGGCCGCCGCCAGGCG
GCCCGTCCTTGTTTCTGAAGCAATGCGCACGCATTGATGCCACTCGTTCA
CATCT
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protein sequence of jgi.p|Nanoce1779_2|591335

>mRNA_5084-protein ID=mRNA_5084-protein|Name=jgi.p|Nanoce1779_2|591335|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MILSPMYLSDLPAAAATVLVVVGGLFVGGKVVIGLEVVQRRPRTACLCGT
GFEWKVLKARGARWAYCWPRTVVRQASGFIRRAALNMTGCFRPGQDREEG
GACRPLVVLLLDPTGDEVTQRTAAFGAAGSIQGNHLKSVHVGPRMLVNLV
GWCGVVTNTCRSALIKSATKLTAAARRPVLVSEAMRTH*
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mRNA from alignment at scaffold_12:415742..417840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5084 ID=mRNA_5084|Name=jgi.p|Nanoce1779_2|591335|organism=Nannochloropsis oceanica|type=mRNA|length=2099bp|location=Sequence derived from alignment at scaffold_12:415742..417840- (Nannochloropsis oceanica)
CCCCCAACCGCAGCTTCCTTAGTCTTAAAATGATCCGTTATCTCCTCAAT
TTTCTTCCTAAACCCCACCTCATCCACCTCCACTTTCCCCACGTTAAATT
CCAATATCTTATCCACAATCACATCCACATCTGAGTTACACAACCCCCTC
AGGAAGTCCCCGAACGGATTAGCAACATCTGACTTCAAGGACGTAATCAA
CCCCGCGTCGATGACTGTGACCCGGCCGTCCTCCATCGACACAATCAAAT
TCCCCGCATGCATGTCCCCATGCACGTAGTTATCCCTTAAAAACATTTTC
ACGTTCATGTCGAACAATACTTTGGCCAACTGCTTTTTCTTTGCCATCAC
TGCCTCGGAGAAATTATCCGAAAGAGTCTTACTCGCGCTCCAGGTGTGAT
CCCCCCCCCCTTCGATATCCGAAAAGACAGTCGCAATTGTCGCCCCCTCC
ACCCAGCTCTCCACCAACACCGAGTCGGAGCATAGCTCTTTACTCACCTG
CGGAAAATGCACTAACCCTGACTGTAGCTCGTGCCTGAAATTTGTCGAAA
ATTTGTACAAATTGTACGCCTCCCATTTCAAGTCTAGTTGCTGCCGCAAG
ATATGGGTGAGCTCATCTTGGGAACAGGGCATGGAATATTTCTCAGGGAA
ACAGGAGTCGACAAACCCGAATATCAAATCGAGATCTAAGAATGTCTCGT
TCAATATATTCGGATGGCGGACTTTCACAGCCACATCTTGGATAGTGCCA
TGAATCGCATACTCAGGCTTCAACCGAGCACGGTACACCTGCGCAACCGT
CCCAGATGCGATGGGAGTTTCTTCAAACCACTCAAAGACGTCCCCAATCT
CTTTTTTGAAACTCTGCCTGATCGTCTTCTCCGTAAATTTGAATGGGTGT
TCTGGCACACCATCCCTTAACCTCGCCATTGTTTTGACTACATCTCGCGA
GAACATGTCCGGGCGCATACTTATCCACTGACCCAACTTCATGAAACAAC
ATCCTGCCTTCTCCATCGCTCGAATCAGAGCCGTCAAAAACCGCTCCCGC
CAAACCTCAGACTCAGGGAATACATACGCCGAGAGCACCCCCACCCCGGC
GACGGGCAGAAATACATAGGCAACGTAAAAAGCCCTGCGGATTGCAAAAA
GCATGCGCCACCACCACGGTTTTTCGATGTAAGGATGGACGAACTCCGGA
GGAGGAGGTTCCAAAGCGACAGAGGGGTCTTCCATGGCTCGCTTCAAGGC
CTCGTCTTCTTCCACAGCATAGTAATAAAATAGTCCGCCAAAAGCACCCG
AGGCGCCTAACACACCTCCCATGATTTTGAGCCCCATGTACTTGTCGGAC
TTGCCGGCAGCAGCAGCGACAGTGCTGGTGGTGGTGGGCGGGCTTTTTGT
AGGAGGGAAAGTGGTGATAGGTTTGGAGGTTGTACAGAGGCGTCCACGGA
CGGCTTGTCTTTGCGGGACGGGTTTTGAGTGGAAGGTCTGTACGTTTGAT
AATTAGTGGGCGAGGGAGCGGTAAAGGAGTTGAGGAGAAAGGAATATAAG
TATGATTAGCGATGTGTAGTTACTCGACAGGAGGAGCGTGGAGTGATATG
AGAAAGGCTGCAGCAAAAGGGGCACGTGTCGATGATCCTGGCAGCATTCT
AGGTGTCCCACAGTCGTCTCTGAGCACATACCTTGAAAGCTCGCGGCGCC
CGCTGGGCATACTGCTGGCCGAGGACCGTTGTCCGGCAAGCCAGCGGCTT
CATTCGGAGAGCGGCACTAAACATGACTGGTTGCTTTAGGCCGGGCCAGG
ATCGTGAAGAAGGGGGTGCGTGTCGTCCGCTTGTTGTGCTGCTTCTAGAC
CCCACGGGAGACGAGGTGACGCAAAGGACGGCGGCGTTTGGCGCAGCAGG
ATCGATTCAAGGAAATCACCTGAAGTCTGTGCATGTGGGGCCAAGGATGC
TGGTGAACTTGGTGGGCTGGTGTGGTGTGGTTACTAATACGTGTCGTTCG
GCCTTAATCAAAAGCGCGACTAAGCTGACGGCCGCCGCCAGGCGGCCCGT
CCTTGTTTCTGAAGCAATGCGCACGCATTGATGCCACTCGTTCACATCT
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Coding sequence (CDS) from alignment at scaffold_12:415742..417840-

>mRNA_5084 ID=mRNA_5084|Name=jgi.p|Nanoce1779_2|591335|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_12:415742..417840- (Nannochloropsis oceanica)
CTTGAAAGCTCGCGGCGCCCGCTGGGCATACTGCTGGCCGAGGACCGTTG
TCCGGCAAGCCAGCGGCTTCATTCGGAGAGCGGCACTAAACATGACTGGT
TGCTTTAGGCCGGGCCAGGATCGTGAAGAAGGGGGTGCGTGTCGTCCGCT
TGTTGTGCTGCTTCTAGACCCCACGGGAGACGAGGTGACGCAAAGGACGG
CGGCGTTTGGCGCAGCAGGATCGATTCAAGGAAATCACCTGAAGTCTGTG
CATGTGGGGCCAAGGATGCTGGTGAACTTGGTGGGCTGGTGTGGTGTGGT
TACTAATACGTGTCGTTCGGCCTTAATCAAAAGCGCGACTAAGCTGACGG
CCGCCGCCAGGCGGCCCGTCCTTGTTTCTGAAGCAATGCGCACGCATTGA
ATGATTTTGAGCCCCATGTACTTGTCGGACTTGCCGGCAGCAGCAGCGAC
AGTGCTGGTGGTGGTGGGCGGGCTTTTTGTAGGAGGGAAAGTGGTGATAG
GTTTGGAGGTTGTACAGAGGCGTCCACGGACGGCTTGTCTTTGCGGGACG
GGTTTTGAGTGGAAGGTCTTGAAAGCTCGCGGCGCCCGCTGGGCATACTG
CTGGCCGAGGACCGTTGTCCGGCAAGCCAGCGGCTTCATTCGGAGAGCGG
CACTAAACATGACTGGTTGCTTTAGGCCGGGCCAGGATCGTGAAGAAGGG
GGTGCGTGTCGTCCGCTTGTTGTGCTGCTTCTAGACCCCACGGGAGACGA
GGTGACGCAAAGGACGGCGGCGTTTGGCGCAGCAGGATCGATTCAAGGAA
ATCACCTGAAGTCTGTGCATGTGGGGCCAAGGATGCTGGTGAACTTGGTG
GGCTGGTGTGGTGTGGTTACTAATACGTGTCGTTCGGCCTTAATCAAAAG
CGCGACTAAGCTGACGGCCGCCGCCAGGCGGCCCGTCCTTGTTTCTGAAG
CAATGCGCACGCATTGAATGATTTTGAGCCCCATGTACTTGTCGGACTTG
CCGGCAGCAGCAGCGACAGTGCTGGTGGTGGTGGGCGGGCTTTTTGTAGG
AGGGAAAGTGGTGATAGGTTTGGAGGTTGTACAGAGGCGTCCACGGACGG
CTTGTCTTTGCGGGACGGGTTTTGAGTGGAAGGT
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Synonyms
Publications