jgi.p|Nanoce1779_2|671244, mRNA_5082 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671244
Unique Name	mRNA_5082
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2076
Alignment location	scaffold_12:412132..414207 +

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Properties


Property Name	Value
TranscriptId	671330
Track	FilteredModels2
ProteinId	671244

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:412132..414207 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671244	gene_5082	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671244	mRNA_5082-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5082	CDS_5082	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:412132..414207+
coding sequence from alignment at scaffold_12:412132..414207+

mRNA sequence

>mRNA_5082 ID=mRNA_5082|Name=jgi.p|Nanoce1779_2|671244|organism=Nannochloropsis oceanica|type=mRNA|length=2076bp
CAGGCACGGCCAACAAGGGTACTGGCACGAAATGAACACCGAATGCTTGG
ACTTTATCCCTTGTCGAGTAGCTGTACGATAAGCTTGCCCTGCGCTTCGT
TTCGCGCCATCTTCATATAGCACCATGCCGCCTAATCCAACACCACGGTG
AGGACAACCACGACAACGGGGAGTATGCTCCTTCAAGGTATACTCCTCTT
TCACGCCCTGGTCGCATTGCCGCGGCCTGCCTTCGGCTTCGGCTCGCCCA
TTCTTTTCTCGTCGTCCATGATGCACAAGCTGCGCTCGAGGAATGCAGGG
TTTGCCATTGCTGTCAAGAAGCGGCTTGTCAAGGATGACGACAATTATAA
TAGTAGTGATGATATTCTTGCAAATTCTTTGTTGGTGGGTCCGTTGCCGA
TCCCTCTGCCTACTAAGATGGCTACAAAGAGCAACAAGGTCGCGAACACT
GCTACTGAGGACGACGAGGCAGACGAGGATGAGATGGAAAAAGATGGAAA
TACAAGCAAAGCTGCAGTCCCTGTTCCAGAAGGCCAAGACACTCTATGGG
AGAATTTCATTGAAATATTTGACCCCGTGGTAGCAACGGCTCCTTTTCTC
CCTTCCTCCTCCTCCTCCAACTCCAACTCTTCCGCCTCCACCACTTCTGC
CCGCTTCTACATGAACAAGGCCGTCCCTTACTTCTTCCTCCGCGATGAGC
TGGGTATCAACGAAAACAAAATGTTGCGCATCTCCTTGGATAACCCACAA
GTTCTCGCCTTGAGCGTGGAACGAAGCCTCCGTCCTAAGGTCGCTTGGCT
TCGCTCGGCTCTTGGGTTGACACAAGCGGAGGCGGCTACCCTGGTAGGGG
GGAGTCCGGGTATGCTTTTGCTAAGCGTCGAAGATAATCTTGCACCAAAA
CTCTCGTGGCTCCAAGATGAATTAGGTTTCGAAACAGAAGAGAGACGCAA
GCTGGTGATGCGCTGCCCGCAGGTCTTGACAACTTCCCCAGGCTCCCTGC
TCATGAAACTGGCCTTCCTAAAGGACGACGTCGGCATGTCCCGTGGCGAG
GTCTACAGGGCTGTACGCTCCATGCCTTCACTCCTCGTCCTCTCTCTCGA
CACCCTCGTCGACAAAGCCGAATACCTCACTGCAGAGTTCGGAGTCACTC
AACAGGACGTAGGGTCTCTGCTCACCCGCGCGCCCGCCCTCTTCTTCCAA
TCCCTCGAAGCTGGATTGAAACCTAAGGCCCGCTTCCTCCGTCGTGACCT
CGGCCTCGATACGGATGCCATGGCCTTCCTACTGCGACGGATGCCCCGCG
CATTGAACTACAATATTGTCTCCAGCGGCCGCCCCCTGCTGCAATACCTT
ACCCGTGGCCCGTTCAATTTCACTCGTGAAGAAGTCGCCCGCATCATTCT
CCGGTCCCCCTCCCTCCTCTCCACTGACGTCACCTCCCCGCGCTTCGGCC
TCCTCCTTGAAAGTCTGCAACAAGCAACCAACCTCCCCCTCGGTCCTGCT
CTCGCCTCCATCCTTCGGCGTTTCCCCATGATATTGTCGTTTACTGCTTC
TCGTCTTCATGCCAGCCTTGACGTCCTCACAGACGACTTAAAATGTTCTT
CAGCAGAAATAGCATCCATCCTTCAAAAACACCCACAGCTACTTGGGTAT
CGTCCCGTGGCTGTTCGTGAAAAGTTGGCTGCGCTTCAAGAAATTTATGG
GTTGTCGGAAGTGGAAGAGGGGAAAAAGGCCGTGTTGAGATCCCCGGCGT
TGTTGTCGTACAGTCTAGACACGAGGCTTAGACCACGGTTGCTGAGGGCA
GCAGAGACAGGAGTGGAGTTGGAGAGGGCGGTGTCGTGGTTACCCTTGAC
GGAGGAGAAGTTTGAGGAGAGGGTGGTGAAGAGCAGTACGGAGGCGATTT
CTTTGGCTAACACCCCTCTGTTGCGACACCGATCGAATGCTAAGTTGCGG
AAGTTGTTGAGGACGACCAAGAGGAGTAGTAGTAGTGATAGTGGTGGTAG
TAGTAGTAGTAGTAGTGGTGGTAGTAGTAGTAGTAGTAGTAGTGGTAGTA
GTAGTAGTAGTGGCGGTAGTAGGTAG

protein sequence of jgi.p|Nanoce1779_2|671244

>mRNA_5082-protein ID=mRNA_5082-protein|Name=jgi.p|Nanoce1779_2|671244|organism=Nannochloropsis oceanica|type=polypeptide|length=634bp
MLLQGILLFHALVALPRPAFGFGSPILFSSSMMHKLRSRNAGFAIAVKKR
LVKDDDNYNSSDDILANSLLVGPLPIPLPTKMATKSNKVANTATEDDEAD
EDEMEKDGNTSKAAVPVPEGQDTLWENFIEIFDPVVATAPFLPSSSSSNS
NSSASTTSARFYMNKAVPYFFLRDELGINENKMLRISLDNPQVLALSVER
SLRPKVAWLRSALGLTQAEAATLVGGSPGMLLLSVEDNLAPKLSWLQDEL
GFETEERRKLVMRCPQVLTTSPGSLLMKLAFLKDDVGMSRGEVYRAVRSM
PSLLVLSLDTLVDKAEYLTAEFGVTQQDVGSLLTRAPALFFQSLEAGLKP
KARFLRRDLGLDTDAMAFLLRRMPRALNYNIVSSGRPLLQYLTRGPFNFT
REEVARIILRSPSLLSTDVTSPRFGLLLESLQQATNLPLGPALASILRRF
PMILSFTASRLHASLDVLTDDLKCSSAEIASILQKHPQLLGYRPVAVREK
LAALQEIYGLSEVEEGKKAVLRSPALLSYSLDTRLRPRLLRAAETGVELE
RAVSWLPLTEEKFEERVVKSSTEAISLANTPLLRHRSNAKLRKLLRTTKR
SSSSDSGGSSSSSSGGSSSSSSSGSSSSSGGSR*

mRNA from alignment at scaffold_12:412132..414207+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5082 ID=mRNA_5082|Name=jgi.p|Nanoce1779_2|671244|organism=Nannochloropsis oceanica|type=mRNA|length=2076bp|location=Sequence derived from alignment at scaffold_12:412132..414207+ (Nannochloropsis oceanica)
CAGGCACGGCCAACAAGGGTACTGGCACGAAATGAACACCGAATGCTTGG
ACTTTATCCCTTGTCGAGTAGCTGTACGATAAGCTTGCCCTGCGCTTCGT
TTCGCGCCATCTTCATATAGCACCATGCCGCCTAATCCAACACCACGGTG
AGGACAACCACGACAACGGGGAGTATGCTCCTTCAAGGTATACTCCTCTT
TCACGCCCTGGTCGCATTGCCGCGGCCTGCCTTCGGCTTCGGCTCGCCCA
TTCTTTTCTCGTCGTCCATGATGCACAAGCTGCGCTCGAGGAATGCAGGG
TTTGCCATTGCTGTCAAGAAGCGGCTTGTCAAGGATGACGACAATTATAA
TAGTAGTGATGATATTCTTGCAAATTCTTTGTTGGTGGGTCCGTTGCCGA
TCCCTCTGCCTACTAAGATGGCTACAAAGAGCAACAAGGTCGCGAACACT
GCTACTGAGGACGACGAGGCAGACGAGGATGAGATGGAAAAAGATGGAAA
TACAAGCAAAGCTGCAGTCCCTGTTCCAGAAGGCCAAGACACTCTATGGG
AGAATTTCATTGAAATATTTGACCCCGTGGTAGCAACGGCTCCTTTTCTC
CCTTCCTCCTCCTCCTCCAACTCCAACTCTTCCGCCTCCACCACTTCTGC
CCGCTTCTACATGAACAAGGCCGTCCCTTACTTCTTCCTCCGCGATGAGC
TGGGTATCAACGAAAACAAAATGTTGCGCATCTCCTTGGATAACCCACAA
GTTCTCGCCTTGAGCGTGGAACGAAGCCTCCGTCCTAAGGTCGCTTGGCT
TCGCTCGGCTCTTGGGTTGACACAAGCGGAGGCGGCTACCCTGGTAGGGG
GGAGTCCGGGTATGCTTTTGCTAAGCGTCGAAGATAATCTTGCACCAAAA
CTCTCGTGGCTCCAAGATGAATTAGGTTTCGAAACAGAAGAGAGACGCAA
GCTGGTGATGCGCTGCCCGCAGGTCTTGACAACTTCCCCAGGCTCCCTGC
TCATGAAACTGGCCTTCCTAAAGGACGACGTCGGCATGTCCCGTGGCGAG
GTCTACAGGGCTGTACGCTCCATGCCTTCACTCCTCGTCCTCTCTCTCGA
CACCCTCGTCGACAAAGCCGAATACCTCACTGCAGAGTTCGGAGTCACTC
AACAGGACGTAGGGTCTCTGCTCACCCGCGCGCCCGCCCTCTTCTTCCAA
TCCCTCGAAGCTGGATTGAAACCTAAGGCCCGCTTCCTCCGTCGTGACCT
CGGCCTCGATACGGATGCCATGGCCTTCCTACTGCGACGGATGCCCCGCG
CATTGAACTACAATATTGTCTCCAGCGGCCGCCCCCTGCTGCAATACCTT
ACCCGTGGCCCGTTCAATTTCACTCGTGAAGAAGTCGCCCGCATCATTCT
CCGGTCCCCCTCCCTCCTCTCCACTGACGTCACCTCCCCGCGCTTCGGCC
TCCTCCTTGAAAGTCTGCAACAAGCAACCAACCTCCCCCTCGGTCCTGCT
CTCGCCTCCATCCTTCGGCGTTTCCCCATGATATTGTCGTTTACTGCTTC
TCGTCTTCATGCCAGCCTTGACGTCCTCACAGACGACTTAAAATGTTCTT
CAGCAGAAATAGCATCCATCCTTCAAAAACACCCACAGCTACTTGGGTAT
CGTCCCGTGGCTGTTCGTGAAAAGTTGGCTGCGCTTCAAGAAATTTATGG
GTTGTCGGAAGTGGAAGAGGGGAAAAAGGCCGTGTTGAGATCCCCGGCGT
TGTTGTCGTACAGTCTAGACACGAGGCTTAGACCACGGTTGCTGAGGGCA
GCAGAGACAGGAGTGGAGTTGGAGAGGGCGGTGTCGTGGTTACCCTTGAC
GGAGGAGAAGTTTGAGGAGAGGGTGGTGAAGAGCAGTACGGAGGCGATTT
CTTTGGCTAACACCCCTCTGTTGCGACACCGATCGAATGCTAAGTTGCGG
AAGTTGTTGAGGACGACCAAGAGGAGTAGTAGTAGTGATAGTGGTGGTAG
TAGTAGTAGTAGTAGTGGTGGTAGTAGTAGTAGTAGTAGTAGTGGTAGTA
GTAGTAGTAGTGGCGGTAGTAGGTAG

Coding sequence (CDS) from alignment at scaffold_12:412132..414207+

>mRNA_5082 ID=mRNA_5082|Name=jgi.p|Nanoce1779_2|671244|organism=Nannochloropsis oceanica|type=CDS|length=1902bp|location=Sequence derived from alignment at scaffold_12:412132..414207+ (Nannochloropsis oceanica)
ATGCTCCTTCAAGGTATACTCCTCTTTCACGCCCTGGTCGCATTGCCGCG
GCCTGCCTTCGGCTTCGGCTCGCCCATTCTTTTCTCGTCGTCCATGATGC
ACAAGCTGCGCTCGAGGAATGCAGGGTTTGCCATTGCTGTCAAGAAGCGG
CTTGTCAAGGATGACGACAATTATAATAGTAGTGATGATATTCTTGCAAA
TTCTTTGTTGGTGGGTCCGTTGCCGATCCCTCTGCCTACTAAGATGGCTA
CAAAGAGCAACAAGGTCGCGAACACTGCTACTGAGGACGACGAGGCAGAC
GAGGATGAGATGGAAAAAGATGGAAATACAAGCAAAGCTGCAGTCCCTGT
TCCAGAAGGCCAAGACACTCTATGGGAGAATTTCATTGAAATATTTGACC
CCGTGGTAGCAACGGCTCCTTTTCTCCCTTCCTCCTCCTCCTCCAACTCC
AACTCTTCCGCCTCCACCACTTCTGCCCGCTTCTACATGAACAAGGCCGT
CCCTTACTTCTTCCTCCGCGATGAGCTGGGTATCAACGAAAACAAAATGT
TGCGCATCTCCTTGGATAACCCACAAGTTCTCGCCTTGAGCGTGGAACGA
AGCCTCCGTCCTAAGGTCGCTTGGCTTCGCTCGGCTCTTGGGTTGACACA
AGCGGAGGCGGCTACCCTGGTAGGGGGGAGTCCGGGTATGCTTTTGCTAA
GCGTCGAAGATAATCTTGCACCAAAACTCTCGTGGCTCCAAGATGAATTA
GGTTTCGAAACAGAAGAGAGACGCAAGCTGGTGATGCGCTGCCCGCAGGT
CTTGACAACTTCCCCAGGCTCCCTGCTCATGAAACTGGCCTTCCTAAAGG
ACGACGTCGGCATGTCCCGTGGCGAGGTCTACAGGGCTGTACGCTCCATG
CCTTCACTCCTCGTCCTCTCTCTCGACACCCTCGTCGACAAAGCCGAATA
CCTCACTGCAGAGTTCGGAGTCACTCAACAGGACGTAGGGTCTCTGCTCA
CCCGCGCGCCCGCCCTCTTCTTCCAATCCCTCGAAGCTGGATTGAAACCT
AAGGCCCGCTTCCTCCGTCGTGACCTCGGCCTCGATACGGATGCCATGGC
CTTCCTACTGCGACGGATGCCCCGCGCATTGAACTACAATATTGTCTCCA
GCGGCCGCCCCCTGCTGCAATACCTTACCCGTGGCCCGTTCAATTTCACT
CGTGAAGAAGTCGCCCGCATCATTCTCCGGTCCCCCTCCCTCCTCTCCAC
TGACGTCACCTCCCCGCGCTTCGGCCTCCTCCTTGAAAGTCTGCAACAAG
CAACCAACCTCCCCCTCGGTCCTGCTCTCGCCTCCATCCTTCGGCGTTTC
CCCATGATATTGTCGTTTACTGCTTCTCGTCTTCATGCCAGCCTTGACGT
CCTCACAGACGACTTAAAATGTTCTTCAGCAGAAATAGCATCCATCCTTC
AAAAACACCCACAGCTACTTGGGTATCGTCCCGTGGCTGTTCGTGAAAAG
TTGGCTGCGCTTCAAGAAATTTATGGGTTGTCGGAAGTGGAAGAGGGGAA
AAAGGCCGTGTTGAGATCCCCGGCGTTGTTGTCGTACAGTCTAGACACGA
GGCTTAGACCACGGTTGCTGAGGGCAGCAGAGACAGGAGTGGAGTTGGAG
AGGGCGGTGTCGTGGTTACCCTTGACGGAGGAGAAGTTTGAGGAGAGGGT
GGTGAAGAGCAGTACGGAGGCGATTTCTTTGGCTAACACCCCTCTGTTGC
GACACCGATCGAATGCTAAGTTGCGGAAGTTGTTGAGGACGACCAAGAGG
AGTAGTAGTAGTGATAGTGGTGGTAGTAGTAGTAGTAGTAGTGGTGGTAG
TAGTAGTAGTAGTAGTAGTGGTAGTAGTAGTAGTAGTGGCGGTAGTAGGT
AG

Synonyms

Publications