jgi.p|Nanoce1779_2|591331, mRNA_5081 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591331
Unique NamemRNA_5081
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1368
Alignment locationscaffold_12:410409..411949 -

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Properties
Property NameValue
TranscriptId591417
TrackFilteredModels2
ProteinId591331
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:410409..411949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591331gene_5081Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591331mRNA_5081-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5081CDS_5081Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5081 ID=mRNA_5081|Name=jgi.p|Nanoce1779_2|591331|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
AGAAGATTATTTTTGTTGCCTCAGCTACGCTTCAGCCAGCCATCTAGGGG
AGCAAATCACACTGCCAAGGTTCTTCTTCGCCATCAACAAAAGCACAAGC
GATCATGGACCTGGACATCAAGAAACTTAAAGTGGACCAGCTTCGCGAGG
AGCTGGGCAAGCGCGGCTTGGACACCAAGGGCAAGAAGGACGAGCTCCAG
GAACGCCTCCAAAATGCAATCGACAAAGAGATGCTGGACGCGATTGACGA
GGAAGACGAGGTCGGCGTGCCTCCTCCTCCGGCTCCCACGTCTACCTCTC
CGCCTCCACCATCTCCCGCTCCGGTTCCAGTCTTACCATCCACGTCCGTC
AGCAAGCTCACCGCAGCTTCGGCCAAGCCCGCCGCTCATTCTCTGACGCG
CATGGCACATGCTGTCCCTGCTGCGCCCGTTGTCCCTCCTGCTCCGGTTG
CCCCTGCTCCCGCTGCCGGAGAAGGCATTGTCAAAAAGGGAGCGGAAACA
GCCGAGACCGACGAAGAAAAGAAGAGGCGGCGTGCGGAGCGATTTGGTAT
TCCCATTTCAGAGGAGGAGAAGAAGAAGGCGCGCGCCGAGCGTTTTGGTC
TCGTCACGCCCGCTGCTGGTAATCCAGCTTCGGGCGGCCATGGTAGGGCA
GGTGGTGCGGGGAAAGCTGTTTTACCTGCAAAGGCTGCATCCAAAGCAGG
TCCTTTGGAAGGAATACCTGTTTTGGATGCTGAGGAGGAGGTGCGACGGC
GGGCGAGAGCGGCCAGGTTTGGGATTCCTGATCCGAAGCTGGAGGAGGAA
AAAAAAGCGGAGCGGGCGAAGCGATTTGCGGATCCAGCCAAGGCGGAGGA
GGAGGCCAAGAAAAAGGCACGGATGGAGAGATTTGCAGGAACACCGTCAG
CTTGAATGGGTTCCAGAAGGTGACAGAGGAACATCAGAAATTGAATGATG
AGGCGCATTCGCGCACTTGTCGACAAGTAAAAACAGAAAGGGTACGTCTG
TTGTGCGTGCGCGTTAGTCATCAACCAGACAAAGAAGATAAGAAGGAAAA
ATCTTTCTTGTGGGGTCTATCCTCGCATGTGTGTTTGAAATGAGTGTGTG
TGTGGAAATTACTGAGTGGGAGGACAACGAGGGATGAAAAAGAAGTGAGA
TGGGCACGGGACATTGGCAAGGACGACACCGGGAATTAAGAGAAGCTGGA
GATAAAATAAATGGTTTCGAAAGCGACGACGGGTTACATTGACATCTAAA
GACATGATAAAAGACGGAAAGGTCATCCCAAAAGAAGAAATTGTGATGCA
TTTCGATGCCAACACACGGAAGGAGAGAATAGAAGATAACCATAAAACAA
TAATAATAATTGCGAGCC
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protein sequence of jgi.p|Nanoce1779_2|591331

>mRNA_5081-protein ID=mRNA_5081-protein|Name=jgi.p|Nanoce1779_2|591331|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MDLDIKKLKVDQLREELGKRGLDTKGKKDELQERLQNAIDKEMLDAIDEE
DEVGVPPPPAPTSTSPPPPSPAPVPVLPSTSVSKLTAASAKPAAHSLTRM
AHAVPAAPVVPPAPVAPAPAAGEGIVKKGAETAETDEEKKRRRAERFGIP
ISEEEKKKARAERFGLVTPAAGNPASGGHGRAGGAGKAVLPAKAASKAGP
LEGIPVLDAEEEVRRRARAARFGIPDPKLEEEKKAERAKRFADPAKAEEE
AKKKARMERFAGTPSA*
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mRNA from alignment at scaffold_12:410409..411949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5081 ID=mRNA_5081|Name=jgi.p|Nanoce1779_2|591331|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp|location=Sequence derived from alignment at scaffold_12:410409..411949- (Nannochloropsis oceanica)
AGAAGATTATTTTTGTTGCCTCAGCTACGCTTCAGCCAGCCATCTAGGGG
AGCAAATCACACTGCCAAGGTTCTTCTTCGCCATCAACAAAAGCACAAGC
GATCATGGACCTGGACATCAAGAAACTTAAAGTGGACCAGCTTCGCGAGG
AGCTGGGCAAGCGCGGCTTGGACACCAAGGGCAAGAAGGACGAGCTCCAG
GAACGCCTCCAAAATGCAATCGACAAAGAGATGCTGGACGCGATTGACGA
GGAAGACGAGGTCGGCGTGCCTCCTCCTCCGGCTCCCACGTCTACCTCTC
CGCCTCCACCATCTCCCGCTCCGGTTCCAGTCTTACCATCCACGTCCGTC
AGCAAGCTCACCGCAGCTTCGGCCAAGCCCGCCGCTCATTCTCTGACGCG
CATGGCACATGCTGTCCCTGCTGCGCCCGTTGTCCCTCCTGCTCCGGTTG
CCCCTGCTCCCGCTGCCGGAGAAGGCATTGTCAAAAAGGGAGCGGAAACA
GCCGAGACCGACGAAGAAAAGAAGAGGCGGCGTGCGGAGCGATTTGGTAT
TCCCATTTCAGAGGAGGAGAAGAAGAAGGCGCGCGCCGAGCGTTTTGGTC
TCGTCACGCCCGCTGCTGGTAATCCAGCTTCGGGCGGCCATGGTAGGGCA
GGTGGTGCGGGGAAAGCTGTTTTACCTGCAAAGGCTGCATCCAAAGCAGG
TCCTTTGGAAGGAATACCTGTTTTGGATGCTGAGGAGGAGGTGCGACGGC
GGGCGAGAGCGGCCAGGTTTGGGATTCCTGATCCGAAGCTGGAGGAGGAA
AAAAAAGCGGAGCGGGCGAAGCGATTTGCGGATCCAGCCAAGGCGGAGGA
GGAGGCCAAGTATGTATTCTGAGTTGCTTCTGGGTTAAGGATCAGGGAGG
GAGAGAAAGGGGAGAAAGAGGGGGTGATGTATTGATCGTTAAAAAAATAT
ATAAGATTGGGAGACAGGAAGAGGGGTAACTCACTATATCAGCTAACATT
TTTCTCCTCCCCCTTTTTATTAATTCATTCAGGAAAAAGGCACGGATGGA
GAGATTTGCAGGAACACCGTCAGCTTGAATGGGTTCCAGAAGGTGACAGA
GGAACATCAGAAATTGAATGATGAGGCGCATTCGCGCACTTGTCGACAAG
TAAAAACAGAAAGGGTACGTCTGTTGTGCGTGCGCGTTAGTCATCAACCA
GACAAAGAAGATAAGAAGGAAAAATCTTTCTTGTGGGGTCTATCCTCGCA
TGTGTGTTTGAAATGAGTGTGTGTGTGGAAATTACTGAGTGGGAGGACAA
CGAGGGATGAAAAAGAAGTGAGATGGGCACGGGACATTGGCAAGGACGAC
ACCGGGAATTAAGAGAAGCTGGAGATAAAATAAATGGTTTCGAAAGCGAC
GACGGGTTACATTGACATCTAAAGACATGATAAAAGACGGAAAGGTCATC
CCAAAAGAAGAAATTGTGATGCATTTCGATGCCAACACACGGAAGGAGAG
AATAGAAGATAACCATAAAACAATAATAATAATTGCGAGCC
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Coding sequence (CDS) from alignment at scaffold_12:410409..411949-

>mRNA_5081 ID=mRNA_5081|Name=jgi.p|Nanoce1779_2|591331|organism=Nannochloropsis oceanica|type=CDS|length=1602bp|location=Sequence derived from alignment at scaffold_12:410409..411949- (Nannochloropsis oceanica)
GAAAAAGGCACGGATGGAGAGATTTGCAGGAACACCGTCAGCTTGAATGG
ACCTGGACATCAAGAAACTTAAAGTGGACCAGCTTCGCGAGGAGCTGGGC
AAGCGCGGCTTGGACACCAAGGGCAAGAAGGACGAGCTCCAGGAACGCCT
CCAAAATGCAATCGACAAAGAGATGCTGGACGCGATTGACGAGGAAGACG
AGGTCGGCGTGCCTCCTCCTCCGGCTCCCACGTCTACCTCTCCGCCTCCA
CCATCTCCCGCTCCGGTTCCAGTCTTACCATCCACGTCCGTCAGCAAGCT
CACCGCAGCTTCGGCCAAGCCCGCCGCTCATTCTCTGACGCGCATGGCAC
ATGCTGTCCCTGCTGCGCCCGTTGTCCCTCCTGCTCCGGTTGCCCCTGCT
CCCGCTGCCGGAGAAGGCATTGTCAAAAAGGGAGCGGAAACAGCCGAGAC
CGACGAAGAAAAGAAGAGGCGGCGTGCGGAGCGATTTGGTATTCCCATTT
CAGAGGAGGAGAAGAAGAAGGCGCGCGCCGAGCGTTTTGGTCTCGTCACG
CCCGCTGCTGGTAATCCAGCTTCGGGCGGCCATGGTAGGGCAGGTGGTGC
GGGGAAAGCTGTTTTACCTGCAAAGGCTGCATCCAAAGCAGGTCCTTTGG
AAGGAATACCTGTTTTGGATGCTGAGGAGGAGGTGCGACGGCGGGCGAGA
GCGGCCAGGTTTGGGATTCCTGATCCGAAGCTGGAGGAGGAAAAAAAAGC
GGAGCGGGCGAAGCGATTTGCGGATCCAGCCAAGGCGGAGGAGGAGGCCA
AGAAAAAGGCACGGATGGAGAGATTTGCAGGAACACCGTCAGCTTGAATG
GACCTGGACATCAAGAAACTTAAAGTGGACCAGCTTCGCGAGGAGCTGGG
CAAGCGCGGCTTGGACACCAAGGGCAAGAAGGACGAGCTCCAGGAACGCC
TCCAAAATGCAATCGACAAAGAGATGCTGGACGCGATTGACGAGGAAGAC
GAGGTCGGCGTGCCTCCTCCTCCGGCTCCCACGTCTACCTCTCCGCCTCC
ACCATCTCCCGCTCCGGTTCCAGTCTTACCATCCACGTCCGTCAGCAAGC
TCACCGCAGCTTCGGCCAAGCCCGCCGCTCATTCTCTGACGCGCATGGCA
CATGCTGTCCCTGCTGCGCCCGTTGTCCCTCCTGCTCCGGTTGCCCCTGC
TCCCGCTGCCGGAGAAGGCATTGTCAAAAAGGGAGCGGAAACAGCCGAGA
CCGACGAAGAAAAGAAGAGGCGGCGTGCGGAGCGATTTGGTATTCCCATT
TCAGAGGAGGAGAAGAAGAAGGCGCGCGCCGAGCGTTTTGGTCTCGTCAC
GCCCGCTGCTGGTAATCCAGCTTCGGGCGGCCATGGTAGGGCAGGTGGTG
CGGGGAAAGCTGTTTTACCTGCAAAGGCTGCATCCAAAGCAGGTCCTTTG
GAAGGAATACCTGTTTTGGATGCTGAGGAGGAGGTGCGACGGCGGGCGAG
AGCGGCCAGGTTTGGGATTCCTGATCCGAAGCTGGAGGAGGAAAAAAAAG
CGGAGCGGGCGAAGCGATTTGCGGATCCAGCCAAGGCGGAGGAGGAGGCC
AA
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Synonyms
Publications