jgi.p|Nanoce1779_2|671242, mRNA_5080 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671242
Unique Name	mRNA_5080
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1479
Alignment location	scaffold_12:408755..410355 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	671328
Track	FilteredModels2
ProteinId	671242

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:408755..410355 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671242	gene_5080	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671242	mRNA_5080-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5080	CDS_5080	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:408755..410355+
coding sequence from alignment at scaffold_12:408755..410355+

mRNA sequence

>mRNA_5080 ID=mRNA_5080|Name=jgi.p|Nanoce1779_2|671242|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp
ATAGACAGAGTTATAAATTTACCATGAAGGGTGCTATCCTCCTCGCCTTG
GTCGCTCCGACCTTGGCTTTCGTCCCCGTCAAGCCTGTTGTGCCCATGGC
CAAGACCCAGTCCCGTAGCAGGGCGCAGACCATCATGCAGATGGATCCCT
CGGTCATGCCCGGCCTTGCCTCCACCCCGGGTCAACCCACAGTTGAGAGC
TGGTTGATGGACAACGCCGACAAGAAGCTTTCCAAGGCCGTGATGGGCAT
CTTCTCCGCCTGCAAAGAGATCGCCTACAAGATCCGCACGGCGTCTTGTG
ACAAAATGGCGTGCTTCAACGAGTTCGGTGACGAGCAGCTTGCCATTGAC
ATCCTGGCCAACAACGTCCTCTTCCAAAACCTCAAGGACTCCGGGGTGGT
CGCCACGGCCTCCTCGGAGGAAACCCCTACGGAGGATCCGATGGGGGGTG
AGGGCTTCTCTGTGGCTTTTGATCCCCTCGATGGCTCTTCCATTATCGAC
ACTAACTTTGCCGTGGGCACCATTTTCGGCGTGTGGCCCGGCTCCCGCCT
GACTGGTATCACTGGACGACAGCTCGCTGCATCCGGGATTGCTGTCTATG
GACCCCGTACGACCATCACCTTTGCGATTGATGGCGTGGATGGTGCGCAC
GAGTTTTTGCTGGTGGATGACTTCACTGCCCGCCACGGGCAGTGGATCAA
GACCAACACATTTACCAGCATTGGGGAGGGCAAGCTTTTCGCCCCCGGGA
ACTTGCGGGCCATTGCCGATAACCCCGGCTACAACGCCATGCACTCGTAC
TGGTTGGAGAACAAATACCAGCTTCGCTACACGGGCGGCATGGTGCCCGA
CGTGAACCAGATCATGGTCAAGGGCAAGGGCGTGTTCGTCAACCCCGAGT
CGCCCTCTGCCAAGGCCAAGCTCCGCTTGCTGTACGAGGTGGCACCCATT
GGATACATGATTGAGAAGGCCGGCGGTGCATCTTCTTATGGCGCGGGTTC
GGTGCTGGACTTGAACATTTACAAGACGGAGGACCGCACCCAGGTGGCAT
ACGGAAGCAAGGATGAGGTGAAGCGCTTTGAGGACATGGTGGGGATTAAG
TATGCCTCCTCCCACCCGGACATCGTTTCCCAGAATGCGGCGCACGCGTA
AATCACGTCGAAAGGATGGATGGATGCGAGAAGAATGAGAAGTGACGATG
CAATCGGAGGAGGGGGGTTGGGGCTGGAGGGAGAGAGAGGGCAAGGTGGG
GATGGGCGGATGGGGCTCTCGTCACATGGCTCTCGGCATGCTGACGTGCA
GTAGGGGTCAAGGGAACGATGTGTGTTAGAGGTGCATGAGTGTATGTGAG
TATAATCCTCATGTTCCTCGCGTTGTTTCTCACTATATGTCATACTTGTC
GTTGTTTTTCCAGACCCTTTACTCTTGTTGGTTGGCGTTTTTCTAACTAC
TGCGGAAGAACCAAGATGGGCAAGAAACC

protein sequence of jgi.p|Nanoce1779_2|671242

>mRNA_5080-protein ID=mRNA_5080-protein|Name=jgi.p|Nanoce1779_2|671242|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MKGAILLALVAPTLAFVPVKPVVPMAKTQSRSRAQTIMQMDPSVMPGLAS
TPGQPTVESWLMDNADKKLSKAVMGIFSACKEIAYKIRTASCDKMACFNE
FGDEQLAIDILANNVLFQNLKDSGVVATASSEETPTEDPMGGEGFSVAFD
PLDGSSIIDTNFAVGTIFGVWPGSRLTGITGRQLAASGIAVYGPRTTITF
AIDGVDGAHEFLLVDDFTARHGQWIKTNTFTSIGEGKLFAPGNLRAIADN
PGYNAMHSYWLENKYQLRYTGGMVPDVNQIMVKGKGVFVNPESPSAKAKL
RLLYEVAPIGYMIEKAGGASSYGAGSVLDLNIYKTEDRTQVAYGSKDEVK
RFEDMVGIKYASSHPDIVSQNAAHA*

mRNA from alignment at scaffold_12:408755..410355+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5080 ID=mRNA_5080|Name=jgi.p|Nanoce1779_2|671242|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp|location=Sequence derived from alignment at scaffold_12:408755..410355+ (Nannochloropsis oceanica)
ATAGACAGAGTTATAAATTTACCATGAAGGGTGCTATCCTCCTCGCCTTG
GTCGCTCCGACCTTGGCTTTCGTCCCCGTCAAGCCTGTTGTGCCCATGGC
CAAGACCCAGTCCCGTAGCAGGGCGCAGACCATCATGCAGATGGATCCCT
CGGTCATGCCCGGCCTTGCCTCCACCCCGGGTCAACCCACAGTTGAGAGC
TGGTTGATGGACAACGCCGACAAGAAGCTTTGTAAGTACAGAGAGAGGAA
AGGAAGGGGATCGATAAAGTGGCACATTTTATCCTTAACCACCCCGACGC
ACCAACTCATCCCTACCATCTTTATTTTCCTCCCCTCCTTACCCTCAAAA
CAGCCAAGGCCGTGATGGGCATCTTCTCCGCCTGCAAAGAGATCGCCTAC
AAGATCCGCACGGCGTCTTGTGACAAAATGGCGTGCTTCAACGAGTTCGG
TGACGAGCAGCTTGCCATTGACATCCTGGCCAACAACGTCCTCTTCCAAA
ACCTCAAGGACTCCGGGGTGGTCGCCACGGCCTCCTCGGAGGAAACCCCT
ACGGAGGATCCGATGGGGGGTGAGGGCTTCTCTGTGGCTTTTGATCCCCT
CGATGGCTCTTCCATTATCGACACTAACTTTGCCGTGGGCACCATTTTCG
GCGTGTGGCCCGGCTCCCGCCTGACTGGTATCACTGGACGACAGCTCGCT
GCATCCGGGATTGCTGTCTATGGACCCCGTACGACCATCACCTTTGCGAT
TGATGGCGTGGATGGTGCGCACGAGTTTTTGCTGGTGGATGACTTCACTG
CCCGCCACGGGCAGTGGATCAAGACCAACACATTTACCAGCATTGGGGAG
GGCAAGCTTTTCGCCCCCGGGAACTTGCGGGCCATTGCCGATAACCCCGG
CTACAACGCCATGCACTCGTACTGGTTGGAGAACAAATACCAGCTTCGCT
ACACGGGCGGCATGGTGCCCGACGTGAACCAGATCATGGTCAAGGGCAAG
GGCGTGTTCGTCAACCCCGAGTCGCCCTCTGCCAAGGCCAAGCTCCGCTT
GCTGTACGAGGTGGCACCCATTGGATACATGATTGAGAAGGCCGGCGGTG
CATCTTCTTATGGCGCGGGTTCGGTGCTGGACTTGAACATTTACAAGACG
GAGGACCGCACCCAGGTGGCATACGGAAGCAAGGATGAGGTGAAGCGCTT
TGAGGACATGGTGGGGATTAAGTATGCCTCCTCCCACCCGGACATCGTTT
CCCAGAATGCGGCGCACGCGTAAATCACGTCGAAAGGATGGATGGATGCG
AGAAGAATGAGAAGTGACGATGCAATCGGAGGAGGGGGGTTGGGGCTGGA
GGGAGAGAGAGGGCAAGGTGGGGATGGGCGGATGGGGCTCTCGTCACATG
GCTCTCGGCATGCTGACGTGCAGTAGGGGTCAAGGGAACGATGTGTGTTA
GAGGTGCATGAGTGTATGTGAGTATAATCCTCATGTTCCTCGCGTTGTTT
CTCACTATATGTCATACTTGTCGTTGTTTTTCCAGACCCTTTACTCTTGT
TGGTTGGCGTTTTTCTAACTACTGCGGAAGAACCAAGATGGGCAAGAAAC
C

Coding sequence (CDS) from alignment at scaffold_12:408755..410355+

>mRNA_5080 ID=mRNA_5080|Name=jgi.p|Nanoce1779_2|671242|organism=Nannochloropsis oceanica|type=CDS|length=2256bp|location=Sequence derived from alignment at scaffold_12:408755..410355+ (Nannochloropsis oceanica)
ATGAAGGGTGCTATCCTCCTCGCCTTGGTCGCTCCGACCTTGGCTTTCGT
CCCCGTCAAGCCTGTTGTGCCCATGGCCAAGACCCAGTCCCGTAGCAGGG
CGCAGACCATCATGCAGATGGATCCCTCGGTCATGCCCGGCCTTGCCTCC
ACCCCGGGTCAACCCACAGTTGAGAGCTGGTTGATGGACAACGCCGACAA
GAAGCTTTCCAAGGCCGTGATGGGCATCTTCTCCGCCTGCAAAGAGATCG
CCTACAAGATCCGCACGGCGTCTTGTGACAAAATGGCGTGCTTCAACGAG
TTCGGTGACGAGCAGCTTGCCATTGACATCCTGGCCAACAACGTCCTCTT
CCAAAACCTCAAGGACTCCGGGGTGGTCGCCACGGCCTCCTCGGAGGAAA
CCCCTACGGAGGATCCGATGGGGGGTGAGGGCTTCTCTGTGGCTTTTGAT
CCCCTCGATGGCTCTTCCATTATCGACACTAACTTTGCCGTGGGCACCAT
TTTCGGCGTGTGGCCCGGCTCCCGCCTGACTGGTATCACTGGACGACAGC
TCGCTGCATCCGGGATTGCTGTCTATGGACCCCGTACGACCATCACCTTT
GCGATTGATGGCGTGGATGGTGCGCACGAGTTTTTGCTGGTGGATGACTT
CACTGCCCGCCACGGGCAGTGGATCAAGACCAACACATTTACCAGCATTG
GGGAGGGCAAGCTTTTCGCCCCCGGGAACTTGCGGGCCATTGCCGATAAC
CCCGGCTACAACGCCATGCACTCGTACTGGTTGGAGAACAAATACCAGCT
TCGCTACACGGGCGGCATGGTGCCCGACGTGAACCAGATCATGGTCAAGG
GCAAGGGCGTGTTCGTCAACCCCGAGTCGCCCTCTGCCAAGGCCAAGCTC
CGCTTGCTGTACGAGGTGGCACCCATTGGATACATGATTGAGAAGGCCGG
CGGTGCATCTTCTTATGGCGCGGGTTCGGTGCTGGACTTGAACATTTACA
AGACGGAGGACCGCACCCAGGTGGCATACGGAAGCAAGGATGAGGTGAAG
CGCTTTGAGGACATGGTGGGGATTAAGTATGCCTCCTCCCACCCGGACAT
CGTTTCCCAGAATGCGGCGCACGCGTAAATGAAGGGTGCTATCCTCCTCG
CCTTGGTCGCTCCGACCTTGGCTTTCGTCCCCGTCAAGCCTGTTGTGCCC
ATGGCCAAGACCCAGTCCCGTAGCAGGGCGCAGACCATCATGCAGATGGA
TCCCTCGGTCATGCCCGGCCTTGCCTCCACCCCGGGTCAACCCACAGTTG
AGAGCTGGTTGATGGACAACGCCGACAAGAAGCTTTCCAAGGCCGTGATG
GGCATCTTCTCCGCCTGCAAAGAGATCGCCTACAAGATCCGCACGGCGTC
TTGTGACAAAATGGCGTGCTTCAACGAGTTCGGTGACGAGCAGCTTGCCA
TTGACATCCTGGCCAACAACGTCCTCTTCCAAAACCTCAAGGACTCCGGG
GTGGTCGCCACGGCCTCCTCGGAGGAAACCCCTACGGAGGATCCGATGGG
GGGTGAGGGCTTCTCTGTGGCTTTTGATCCCCTCGATGGCTCTTCCATTA
TCGACACTAACTTTGCCGTGGGCACCATTTTCGGCGTGTGGCCCGGCTCC
CGCCTGACTGGTATCACTGGACGACAGCTCGCTGCATCCGGGATTGCTGT
CTATGGACCCCGTACGACCATCACCTTTGCGATTGATGGCGTGGATGGTG
CGCACGAGTTTTTGCTGGTGGATGACTTCACTGCCCGCCACGGGCAGTGG
ATCAAGACCAACACATTTACCAGCATTGGGGAGGGCAAGCTTTTCGCCCC
CGGGAACTTGCGGGCCATTGCCGATAACCCCGGCTACAACGCCATGCACT
CGTACTGGTTGGAGAACAAATACCAGCTTCGCTACACGGGCGGCATGGTG
CCCGACGTGAACCAGATCATGGTCAAGGGCAAGGGCGTGTTCGTCAACCC
CGAGTCGCCCTCTGCCAAGGCCAAGCTCCGCTTGCTGTACGAGGTGGCAC
CCATTGGATACATGATTGAGAAGGCCGGCGGTGCATCTTCTTATGGCGCG
GGTTCGGTGCTGGACTTGAACATTTACAAGACGGAGGACCGCACCCAGGT
GGCATACGGAAGCAAGGATGAGGTGAAGCGCTTTGAGGACATGGTGGGGA
TTAAGTATGCCTCCTCCCACCCGGACATCGTTTCCCAGAATGCGGCGCAC
GCGTAA

Synonyms

Publications