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Properties
| Property Name | Value |
|---|
| TranscriptId | 628037 |
| Track | FilteredModels2 |
| ProteinId | 627951 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1228572..1230885 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_508 ID=mRNA_508|Name=jgi.p|Nanoce1779_2|627951|organism=Nannochloropsis oceanica|type=mRNA|length=1929bp
CAGGATGAAGAGAAAGATAGCTGCCACCGCTGCTTGTGGCACTGTCGGGG
GCAAGAAACGACAGCAGGCCCAGAAACGCCATGTGCAAAAGATGGAAGAA
GAGGCCGCTGCGGCTGAAGGCTACTCCTCTTCATCATCTTCCTCGTCGAG
CAAGGACTCGGCAGACGACATCAAGCTGTACGAAAAGGGAGAGGTCGACG
ACGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAG
GAGGAAGAGGACATCTCGAAGACGGCCCAAGACAAGGGCAAAGGCCAAAA
ACAGATCAGCGACAATCCAACCGATTCAGCCAAAGCAAGCAAGGGAAGCA
AGAAGGCCGAAAAGAAAGAGAAGGATGAGGGTGGGGGAAAGGACGTGGAA
GTCAGCTTTGATTTTTCGGACCCGGACGAGCGTTTCTTTTTTGGCATCCG
CTCATTACTGCAGTGGCTGGCACCCGAGGGCGTAAATGTTACGTCCCTCG
CCGAGCTCATAGTTCAAGAGAAGGGCCTGGGAAGCATCATTCACTGCACG
AACGAAACCGACGTGTTTGCCTTTGTAACTACCCTCAACATAAAAGCCCA
CCAAGGAAACGCCGGCATGCTCTCCCTCTGCGAGAGGCTCCTCCGTCCCC
GCTGCCCCGCCAGCCTGAAATTGGCGTTTGAAAAGGCCTTAAGTAGCCCC
GAGACTTTTGTGTTTTTGCATGGACGGTTTGTGAATCTGCCGTTACCGCT
TATTCCCTTGTTGCACAAGTCGAGCCATGACGACATGGCGTGGGCACAGT
CAAGCGAGGCGTCCTTCCCCCGGATTAAGCAAGTTTTCACTGTAAGCCCC
TGTACGGTAGATCTAGGAGGAGGTCAAAAGGCCTCCCTTCCTTACGCGCC
CAACGACGCGATTTACGATCGATTCGAAGATGAGATCATGGTACAGGCTG
CAGAGATGAATTATTGCTTTTCTCGACGGACGGAGGGGGAGGGGGAGGGA
AGGAAAGATGGCGGGAGAGAGAAGGAGGATGGAAAAGAAAAGGGGAAGGA
TGTAGAGGACAACTACGATCATGACTACGTACCGCCGCAGAAGAAGAAGA
AGGAGAAGAAGAAGCAGAAAGTGACAGGTGGTAATGAAGATAGTTCTGAA
GGAGGGCAAGGTCTGGTGGTGAGTCTGGTGGAGACTAAAGTCCTACAAGA
GAACCTTCTGCAAATCGAGGAAATGGTGGGATGAAGACAAAAGAGAAAAG
CAAGGACTTTGTAAGTCACCAGTCGATGTTTCTGGCAAATCTAATCCTGA
GTTTTTTGGCATCTCTCAGCTTCATCCACCTTTCTTTTATCATGGCCTTC
AACAGTCTGGGAAGCTGATGCGTGGAATTCCCAAAATCCTCAAAAGGGGG
AGTGGCAGCGGCAAGAGCAAAGGAGGGATAGAAGGAAGCGATAAGGTCTT
TGTAGAATTTCCTGTACGTGAGCCGTGTCTTTCGCCTCTATGGGCCGGGC
AAGGCTTCACAAGGCTTCACAAGGATATACGTGTCCTCTTTGTTTGTTCC
GTTGCCGGGGTGAAGGGCAGCAACCACGTTGTTGCAGCAAGAGGTCTTCT
TTTTTGCGTTACCTTGATCAAAGCCGGTCCTTAACTCGGAAGACCACGGT
CACGCCGTCTGGTGGCACCGTCGTTCTCTACATCCCCATCCACTCTCGCA
AAGTCTTTACAATGCGATAGCTTGCAGATAGATCGGGCTTATCAGTCTGG
AATGGTCAGTTGCTGTCGTTATGCCCATGCTTGAGCTTTGCTTCGCCGTC
GTCATCGATTCTCAGTCAGACAGACACTCATCCTTTTACAACAGACTTGG
AGGCCTCTAACCATGCAAGCAACTTAGACCCACCAAGAGCTCAAAAAAAT
CTATCGAAATTTCCAATCTCACGAGCTCC back to topprotein sequence of jgi.p|Nanoce1779_2|627951 >mRNA_508-protein ID=mRNA_508-protein|Name=jgi.p|Nanoce1779_2|627951|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MKRKIAATAACGTVGGKKRQQAQKRHVQKMEEEAAAAEGYSSSSSSSSSK
DSADDIKLYEKGEVDDESSSSSSSSSSSSSSEEEEDISKTAQDKGKGQKQ
ISDNPTDSAKASKGSKKAEKKEKDEGGGKDVEVSFDFSDPDERFFFGIRS
LLQWLAPEGVNVTSLAELIVQEKGLGSIIHCTNETDVFAFVTTLNIKAHQ
GNAGMLSLCERLLRPRCPASLKLAFEKALSSPETFVFLHGRFVNLPLPLI
PLLHKSSHDDMAWAQSSEASFPRIKQVFTVSPCTVDLGGGQKASLPYAPN
DAIYDRFEDEIMVQAAEMNYCFSRRTEGEGEGRKDGGREKEDGKEKGKDV
EDNYDHDYVPPQKKKKEKKKQKVTGGNEDSSEGGQGLVVSLVETKVLQEN
LLQIEEMVG* back to topmRNA from alignment at scaffold_3:1228572..1230885- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_508 ID=mRNA_508|Name=jgi.p|Nanoce1779_2|627951|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp|location=Sequence derived from alignment at scaffold_3:1228572..1230885- (Nannochloropsis oceanica)
CAGGATGAAGAGAAAGATAGCTGCCACCGCTGCTTGTGGCACTGTCGGGG
GCAAGAAACGACAGCAGGCCCAGAAACGCCATGTGCAAAAGATGGAAGAA
GAGGCCGCTGCGGCTGAAGGTGAGCGGAGGGAGGAGAGGAGGGGGTGGGG
AGGCTAGATCTTGCCGGCCGCAATGGTAGATTCAGGCGCATTTATATACG
CGCAACAATCATTACAGGCTACTCCTCTTCATCATCTTCCTCGTCGAGCA
AGGACTCGGCAGACGACATCAAGCTGTACGAAAAGGGAGAGGTCGACGAC
GAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGGA
GGAAGAGGACATCTCGAAGACGGCCCAAGACAAGGGCAAAGGCCAAAAAC
AGATCAGCGACAATCCAACCGATTCAGCCAAAGCAAGCAAGGGAAGCAAG
AAGGCCGAAAAGAAAGAGAAGGATGAGGGTGGGGGAAAGGACGTGGAAGT
CAGCTTTGATTTTTCGGACCCGGACGAGCGTTTCTTTTTTGGCATCCGCT
CATTACTGCAGTGGCTGGCACCCGAGGTAAGCATGGGCATGGAGGATGGG
GACTGACATAGATGGTGATGGGAAGGAAAACTGATAAACGATGGTCGATT
ACAGGGCGAGTAATAGGACGGACAAGAGAGACATCGACGACCATTAAATC
ACTCACACACATTCTCTTCTCTCTCCCTCCTCCCTACCTACGCAGGGCGT
AAATGTTACGTCCCTCGCCGAGCTCATAGTTCAAGAGAAGGGCCTGGGAA
GCATCATTCACTGCACGAACGAAACCGACGTGTTTGCCTTTGTAACTACC
CTCAACATAAAAGCCCACCAAGGAAACGCCGGCATGCTCTCCCTCTGCGA
GAGGCTCCTCCGTCCCCGCTGCCCCGCCAGCCTGAAATTGGCGTTTGAAA
AGGCCTTAAGTAGCCCCGAGACTTTTGTGTTTTTGCATGGACGGTTTGTG
AATCTGCCGTTACCGCTTATTCCCTTGTTGCACAAGTCGAGCCATGACGA
CATGGCGTGGGCACAGTCAAGCGAGGTACGTTTCTGATCGTGGAGAAAAG
GAATTCAACAAGGAAGAAAGGATGAGGACAAAAAAAGGAACAAATCAAAG
TTTTACTCACCTCTTTCTGTTTCTCCTTCCTTCCCATTCAAAGGCGTCCT
TCCCCCGGATTAAGCAAGTTTTCACTGTAAGCCCCTGTACGGTAGATCTA
GGAGGAGGTCAAAAGGCCTCCCTTCCTTACGCGCCCAACGACGCGATTTA
CGATCGATTCGAAGATGAGATCATGGTACAGGCTGCAGAGATGAATTATT
GCTTTTCTCGACGGACGGAGGGGGAGGGGGAGGGAAGGAAAGATGGCGGG
AGAGAGAAGGAGGATGGAAAAGAAAAGGGGAAGGATGTAGAGGACAACTA
CGATCATGACTACGTACCGCCGCAGAAGAAGAAGAAGGAGAAGAAGAAGC
AGAAAGTGACAGGTGGTAATGAAGATAGTTCTGAAGGAGGGCAAGGTCTG
GTGGTGAGTCTGGTGGAGACTAAAGTCCTACAAGAGAACCTTCTGCAAAT
CGAGGAAATGGTGGGATGAAGACAAAAGAGAAAAGCAAGGACTTTGTAAG
TCACCAGTCGATGTTTCTGGCAAATCTAATCCTGAGTTTTTTGGCATCTC
TCAGCTTCATCCACCTTTCTTTTATCATGGCCTTCAACAGTCTGGGAAGC
TGATGCGTGGAATTCCCAAAATCCTCAAAAGGGGGAGTGGCAGCGGCAAG
AGCAAAGGAGGGATAGAAGGAAGCGATAAGGTCTTTGTAGAATTTCCTGT
ACGTGAGCCGTGTCTTTCGCCTCTATGGGCCGGGCAAGGCTTCACAAGGC
TTCACAAGGATATACGTGTCCTCTTTGTTTGTTCCGTTGCCGGGGTGAAG
GGCAGCAACCACGTTGTTGCAGCAAGAGGTCTTCTTTTTTGCGTTACCTT
GATCAAAGCCGGTCCTTAACTCGGAAGACCACGGTCACGCCGTCTGGTGG
CACCGTCGTTCTCTACATCCCCATCCACTCTCGCAAAGTCTTTACAATGC
GATAGCTTGCAGATAGATCGGGCTTATCAGTCTGGAATGGTCAGTTGCTG
TCGTTATGCCCATGCTTGAGCTTTGCTTCGCCGTCGTCATCGATTCTCAG
TCAGACAGACACTCATCCTTTTACAACAGACTTGGAGGCCTCTAACCATG
CAAGCAACTTAGACCCACCAAGAGCTCAAAAAAATCTATCGAAATTTCCA
ATCTCACGAGCTCC back to topCoding sequence (CDS) from alignment at scaffold_3:1228572..1230885- >mRNA_508 ID=mRNA_508|Name=jgi.p|Nanoce1779_2|627951|organism=Nannochloropsis oceanica|type=CDS|length=4920bp|location=Sequence derived from alignment at scaffold_3:1228572..1230885- (Nannochloropsis oceanica)
GCGTCCTTCCCCCGGATTAAGCAAGTTTTCACTGTAAGCCCCTGTACGGT
AGATCTAGGAGGAGGTCAAAAGGCCTCCCTTCCTTACGCGCCCAACGACG
CGATTTACGATCGATTCGAAGATGAGATCATGGTACAGGCTGCAGAGATG
AATTATTGCTTTTCTCGACGGACGGAGGGGGAGGGGGAGGGAAGGAAAGA
TGGCGGGAGAGAGAAGGAGGATGGAAAAGAAAAGGGGAAGGATGTAGAGG
ACAACTACGATCATGACTACGTACCGCCGCAGAAGAAGAAGAAGGAGAAG
AAGAAGCAGAAAGTGACAGGTGGTAATGAAGATAGTTCTGAAGGAGGGCA
AGGTCTGGTGGTGAGTCTGGTGGAGACTAAAGTCCTACAAGAGAACCTTC
TGCAAATCGAGGAAATGGTGGGATGAGGCGTAAATGTTACGTCCCTCGCC
GAGCTCATAGTTCAAGAGAAGGGCCTGGGAAGCATCATTCACTGCACGAA
CGAAACCGACGTGTTTGCCTTTGTAACTACCCTCAACATAAAAGCCCACC
AAGGAAACGCCGGCATGCTCTCCCTCTGCGAGAGGCTCCTCCGTCCCCGC
TGCCCCGCCAGCCTGAAATTGGCGTTTGAAAAGGCCTTAAGTAGCCCCGA
GACTTTTGTGTTTTTGCATGGACGGTTTGTGAATCTGCCGTTACCGCTTA
TTCCCTTGTTGCACAAGTCGAGCCATGACGACATGGCGTGGGCACAGTCA
AGCGAGGCTACTCCTCTTCATCATCTTCCTCGTCGAGCAAGGACTCGGCA
GACGACATCAAGCTGTACGAAAAGGGAGAGGTCGACGACGAGAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGGAGGAAGAGGACA
TCTCGAAGACGGCCCAAGACAAGGGCAAAGGCCAAAAACAGATCAGCGAC
AATCCAACCGATTCAGCCAAAGCAAGCAAGGGAAGCAAGAAGGCCGAAAA
GAAAGAGAAGGATGAGGGTGGGGGAAAGGACGTGGAAGTCAGCTTTGATT
TTTCGGACCCGGACGAGCGTTTCTTTTTTGGCATCCGCTCATTACTGCAG
TGGCTGGCACCCGAGATGAAGAGAAAGATAGCTGCCACCGCTGCTTGTGG
CACTGTCGGGGGCAAGAAACGACAGCAGGCCCAGAAACGCCATGTGCAAA
AGATGGAAGAAGAGGCCGCTGCGGCTGAAGGCGTCCTTCCCCCGGATTAA
GCAAGTTTTCACTGTAAGCCCCTGTACGGTAGATCTAGGAGGAGGTCAAA
AGGCCTCCCTTCCTTACGCGCCCAACGACGCGATTTACGATCGATTCGAA
GATGAGATCATGGTACAGGCTGCAGAGATGAATTATTGCTTTTCTCGACG
GACGGAGGGGGAGGGGGAGGGAAGGAAAGATGGCGGGAGAGAGAAGGAGG
ATGGAAAAGAAAAGGGGAAGGATGTAGAGGACAACTACGATCATGACTAC
GTACCGCCGCAGAAGAAGAAGAAGGAGAAGAAGAAGCAGAAAGTGACAGG
TGGTAATGAAGATAGTTCTGAAGGAGGGCAAGGTCTGGTGGTGAGTCTGG
TGGAGACTAAAGTCCTACAAGAGAACCTTCTGCAAATCGAGGAAATGGTG
GGATGAGGCGTAAATGTTACGTCCCTCGCCGAGCTCATAGTTCAAGAGAA
GGGCCTGGGAAGCATCATTCACTGCACGAACGAAACCGACGTGTTTGCCT
TTGTAACTACCCTCAACATAAAAGCCCACCAAGGAAACGCCGGCATGCTC
TCCCTCTGCGAGAGGCTCCTCCGTCCCCGCTGCCCCGCCAGCCTGAAATT
GGCGTTTGAAAAGGCCTTAAGTAGCCCCGAGACTTTTGTGTTTTTGCATG
GACGGTTTGTGAATCTGCCGTTACCGCTTATTCCCTTGTTGCACAAGTCG
AGCCATGACGACATGGCGTGGGCACAGTCAAGCGAGGCTACTCCTCTTCA
TCATCTTCCTCGTCGAGCAAGGACTCGGCAGACGACATCAAGCTGTACGA
AAAGGGAGAGGTCGACGACGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCGAGGAGGAAGAGGACATCTCGAAGACGGCCCAAGAC
AAGGGCAAAGGCCAAAAACAGATCAGCGACAATCCAACCGATTCAGCCAA
AGCAAGCAAGGGAAGCAAGAAGGCCGAAAAGAAAGAGAAGGATGAGGGTG
GGGGAAAGGACGTGGAAGTCAGCTTTGATTTTTCGGACCCGGACGAGCGT
TTCTTTTTTGGCATCCGCTCATTACTGCAGTGGCTGGCACCCGAGATGAA
GAGAAAGATAGCTGCCACCGCTGCTTGTGGCACTGTCGGGGGCAAGAAAC
GACAGCAGGCCCAGAAACGCCATGTGCAAAAGATGGAAGAAGAGGCCGCT
GCGGCTGAAGGCGTCCTTCCCCCGGATTAAGCAAGTTTTCACTGTAAGCC
CCTGTACGGTAGATCTAGGAGGAGGTCAAAAGGCCTCCCTTCCTTACGCG
CCCAACGACGCGATTTACGATCGATTCGAAGATGAGATCATGGTACAGGC
TGCAGAGATGAATTATTGCTTTTCTCGACGGACGGAGGGGGAGGGGGAGG
GAAGGAAAGATGGCGGGAGAGAGAAGGAGGATGGAAAAGAAAAGGGGAAG
GATGTAGAGGACAACTACGATCATGACTACGTACCGCCGCAGAAGAAGAA
GAAGGAGAAGAAGAAGCAGAAAGTGACAGGTGGTAATGAAGATAGTTCTG
AAGGAGGGCAAGGTCTGGTGGTGAGTCTGGTGGAGACTAAAGTCCTACAA
GAGAACCTTCTGCAAATCGAGGAAATGGTGGGATGAGGCGTAAATGTTAC
GTCCCTCGCCGAGCTCATAGTTCAAGAGAAGGGCCTGGGAAGCATCATTC
ACTGCACGAACGAAACCGACGTGTTTGCCTTTGTAACTACCCTCAACATA
AAAGCCCACCAAGGAAACGCCGGCATGCTCTCCCTCTGCGAGAGGCTCCT
CCGTCCCCGCTGCCCCGCCAGCCTGAAATTGGCGTTTGAAAAGGCCTTAA
GTAGCCCCGAGACTTTTGTGTTTTTGCATGGACGGTTTGTGAATCTGCCG
TTACCGCTTATTCCCTTGTTGCACAAGTCGAGCCATGACGACATGGCGTG
GGCACAGTCAAGCGAGGCTACTCCTCTTCATCATCTTCCTCGTCGAGCAA
GGACTCGGCAGACGACATCAAGCTGTACGAAAAGGGAGAGGTCGACGACG
AGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGGAG
GAAGAGGACATCTCGAAGACGGCCCAAGACAAGGGCAAAGGCCAAAAACA
GATCAGCGACAATCCAACCGATTCAGCCAAAGCAAGCAAGGGAAGCAAGA
AGGCCGAAAAGAAAGAGAAGGATGAGGGTGGGGGAAAGGACGTGGAAGTC
AGCTTTGATTTTTCGGACCCGGACGAGCGTTTCTTTTTTGGCATCCGCTC
ATTACTGCAGTGGCTGGCACCCGAGATGAAGAGAAAGATAGCTGCCACCG
CTGCTTGTGGCACTGTCGGGGGCAAGAAACGACAGCAGGCCCAGAAACGC
CATGTGCAAAAGATGGAAGAAGAGGCCGCTGCGGCTGAAGGCGTCCTTCC
CCCGGATTAAGCAAGTTTTCACTGTAAGCCCCTGTACGGTAGATCTAGGA
GGAGGTCAAAAGGCCTCCCTTCCTTACGCGCCCAACGACGCGATTTACGA
TCGATTCGAAGATGAGATCATGGTACAGGCTGCAGAGATGAATTATTGCT
TTTCTCGACGGACGGAGGGGGAGGGGGAGGGAAGGAAAGATGGCGGGAGA
GAGAAGGAGGATGGAAAAGAAAAGGGGAAGGATGTAGAGGACAACTACGA
TCATGACTACGTACCGCCGCAGAAGAAGAAGAAGGAGAAGAAGAAGCAGA
AAGTGACAGGTGGTAATGAAGATAGTTCTGAAGGAGGGCAAGGTCTGGTG
GTGAGTCTGGTGGAGACTAAAGTCCTACAAGAGAACCTTCTGCAAATCGA
GGAAATGGTGGGATGAGGCGTAAATGTTACGTCCCTCGCCGAGCTCATAG
TTCAAGAGAAGGGCCTGGGAAGCATCATTCACTGCACGAACGAAACCGAC
GTGTTTGCCTTTGTAACTACCCTCAACATAAAAGCCCACCAAGGAAACGC
CGGCATGCTCTCCCTCTGCGAGAGGCTCCTCCGTCCCCGCTGCCCCGCCA
GCCTGAAATTGGCGTTTGAAAAGGCCTTAAGTAGCCCCGAGACTTTTGTG
TTTTTGCATGGACGGTTTGTGAATCTGCCGTTACCGCTTATTCCCTTGTT
GCACAAGTCGAGCCATGACGACATGGCGTGGGCACAGTCAAGCGAGGCTA
CTCCTCTTCATCATCTTCCTCGTCGAGCAAGGACTCGGCAGACGACATCA
AGCTGTACGAAAAGGGAGAGGTCGACGACGAGAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCGAGGAGGAAGAGGACATCTCGAAGAC
GGCCCAAGACAAGGGCAAAGGCCAAAAACAGATCAGCGACAATCCAACCG
ATTCAGCCAAAGCAAGCAAGGGAAGCAAGAAGGCCGAAAAGAAAGAGAAG
GATGAGGGTGGGGGAAAGGACGTGGAAGTCAGCTTTGATTTTTCGGACCC
GGACGAGCGTTTCTTTTTTGGCATCCGCTCATTACTGCAGTGGCTGGCAC
CCGAGATGAAGAGAAAGATAGCTGCCACCGCTGCTTGTGGCACTGTCGGG
GGCAAGAAACGACAGCAGGCCCAGAAACGCCATGTGCAAAAGATGGAAGA
AGAGGCCGCTGCGGCTGAAG back to top
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