jgi.p|Nanoce1779_2|591328, mRNA_5079 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591328
Unique Name	mRNA_5079
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1797
Alignment location	scaffold_12:406980..408776 -

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Properties


Property Name	Value
TranscriptId	591414
Track	FilteredModels2
ProteinId	591328

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:406980..408776 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591328	gene_5079	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591328	mRNA_5079-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5079	CDS_5079	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:406980..408776-
coding sequence from alignment at scaffold_12:406980..408776-

mRNA sequence

>mRNA_5079 ID=mRNA_5079|Name=jgi.p|Nanoce1779_2|591328|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp
GTAAATTTATAACTCTGTCTATGTTATTTTGAGATGGGAGAGAAGGGGGG
GAGGGAGGGTTGATGTTTGGTTGGAGCCAAGTAAGCGGTCCCTGTGGCCA
AAGGGCTGAGCATAAATTGGGCAGGGTAGGCAGGCATGACGGCGAAGTCT
CTTGGTGTTGTCCCTGACGGCGCAATCACGACTTAGGGTTTGTACCATGT
GCTAATGTGGATAGAAAAGAGTCGCGATAATAGATCGGGAGGAACGTCGA
CGTGGGCGAAGACAAGAGCCCAGCATCTGGAGTGTTTTCAGAGACCTACA
ACCACGAGCCAAAGTGAGTGATTGGACAGTCGAACACCACCACTGACACT
CTCGCAACCCGAAATCCACGGCGCCGCCATTTAACAAGCATGCCCGTGAC
ACAAACATGAAGGGCAAGGCATGCATGCGTGTGGCCGAAGATCTGCTGCA
GAGGTGAAGCAAGGGAGGGTTGTGGACTGCAACAACGGGCAAACTGAAGC
CGACCCTGTCCAAACGCGCCACGCACAAGGCAAACACGTCCCCCACGCCC
TGATGTAAAGCAGGCCACTGGTACACTCACATAAACATACACAACCTTGT
CACCAAGCCAGGCAGGACCTTGTAATCGGCCCTCTACAACTCCTGCAGCG
ATGGAAGAAGGAGGAGAGGTGGCAGCAACAGGGTACCGAGATTCTCAAAC
TGTCCTCGAGAGCCCAACGATGGGGGGAGGAGGTTATGGTGCTTGCAGCA
GGAAGCTGGGCTGAATAAGGGCTGATTGGGATCCACGGTGCACCCTCAAT
GACCTGCCCTTGCCTATTTTGTGAGGTTGTGAGGAGGACTGGTTAGCCTG
TGCTGTTGTGGTGCACATTGTTGCACTTTAGGTAAGGAAGCAAGTTTATC
TCTTCTCCTTCATAACGAACCTTCCCGACCCCACAGGCCACGCCGATGAA
CATAATGACAAGAAGACGAGCCCTCGGCGTCTCTGTTCTGCCAATTTTAC
TGTTGATGACACTCTTAACTACCACGAATGCCTTTGTCCTTCCCGCTGCC
TCGTCCCTCCCGAACCCACAAACAAGGATGGCCGCCTGCAAGAGCTCTAT
GGCTTCAGAAGCCATAGGCAAGGTTCTAGCAGCGTGCAGCTTACTGCTAG
CTGGGGGGCCGAATCTAGCCGGCGCTATGGCCACGTCCTCTTTCTCCACA
ATGACAACGACGACGACGACGACGGTGGCCCTAAGCACGTCCCCGTCCGG
TGCTGGTGTGGAGGTCCTGAACGACTTCTTGCGGGCCGTCAAGTCGGTCA
AAAACGAGCTTACAAGCGAGAAAGCCACTGACCTTCAATTCGTGCAGAAA
GCTTTTGATGTGGAGGCAGTTACAAACGCAGTCGATGGGACGCTTGACGC
CCAGATGAAAGGGGCAGGCATGAACCAGGCATCGATGGTGGGCAAACGCA
AGATCGTCGACAAGGTGTTAAGGCAAGTGCTCTCGGACGTGATTGTCGTA
GAGGACATACTGCGGGACCTTCCCCCCGAAAAAACCGGCTTAGCAAGATT
AAAGAAGGTGGGGAAACCATTGGGTAAGCTCGAGAAGGACTTACAACGAC
TGACGGGAGCGCTTACTTCAGAAGGAAGTGAGGATACGGCGGGGGCTGCG
GGATTAGCGAAGCCATTGTTTTCTTTGTGTGCAGATGGATATTTGTTGTG
TGATCCGCAGTGAGCGGAGGTAGAGGCAGAAAGATGTATGTAGGAGAAAA
AATAGAGAATGGGAATGACAAGGAACAAAATAGAAATCACTTTGAGT

protein sequence of jgi.p|Nanoce1779_2|591328

>mRNA_5079-protein ID=mRNA_5079-protein|Name=jgi.p|Nanoce1779_2|591328|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MNIMTRRRALGVSVLPILLLMTLLTTTNAFVLPAASSLPNPQTRMAACKS
SMASEAIGKVLAACSLLLAGGPNLAGAMATSSFSTMTTTTTTTVALSTSP
SGAGVEVLNDFLRAVKSVKNELTSEKATDLQFVQKAFDVEAVTNAVDGTL
DAQMKGAGMNQASMVGKRKIVDKVLRQVLSDVIVVEDILRDLPPEKTGLA
RLKKVGKPLGKLEKDLQRLTGALTSEGSEDTAGAAGLAKPLFSLCADGYL
LCDPQ*

mRNA from alignment at scaffold_12:406980..408776-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5079 ID=mRNA_5079|Name=jgi.p|Nanoce1779_2|591328|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at scaffold_12:406980..408776- (Nannochloropsis oceanica)
GTAAATTTATAACTCTGTCTATGTTATTTTGAGATGGGAGAGAAGGGGGG
GAGGGAGGGTTGATGTTTGGTTGGAGCCAAGTAAGCGGTCCCTGTGGCCA
AAGGGCTGAGCATAAATTGGGCAGGGTAGGCAGGCATGACGGCGAAGTCT
CTTGGTGTTGTCCCTGACGGCGCAATCACGACTTAGGGTTTGTACCATGT
GCTAATGTGGATAGAAAAGAGTCGCGATAATAGATCGGGAGGAACGTCGA
CGTGGGCGAAGACAAGAGCCCAGCATCTGGAGTGTTTTCAGAGACCTACA
ACCACGAGCCAAAGTGAGTGATTGGACAGTCGAACACCACCACTGACACT
CTCGCAACCCGAAATCCACGGCGCCGCCATTTAACAAGCATGCCCGTGAC
ACAAACATGAAGGGCAAGGCATGCATGCGTGTGGCCGAAGATCTGCTGCA
GAGGTGAAGCAAGGGAGGGTTGTGGACTGCAACAACGGGCAAACTGAAGC
CGACCCTGTCCAAACGCGCCACGCACAAGGCAAACACGTCCCCCACGCCC
TGATGTAAAGCAGGCCACTGGTACACTCACATAAACATACACAACCTTGT
CACCAAGCCAGGCAGGACCTTGTAATCGGCCCTCTACAACTCCTGCAGCG
ATGGAAGAAGGAGGAGAGGTGGCAGCAACAGGGTACCGAGATTCTCAAAC
TGTCCTCGAGAGCCCAACGATGGGGGGAGGAGGTTATGGTGCTTGCAGCA
GGAAGCTGGGCTGAATAAGGGCTGATTGGGATCCACGGTGCACCCTCAAT
GACCTGCCCTTGCCTATTTTGTGAGGTTGTGAGGAGGACTGGTTAGCCTG
TGCTGTTGTGGTGCACATTGTTGCACTTTAGGTAAGGAAGCAAGTTTATC
TCTTCTCCTTCATAACGAACCTTCCCGACCCCACAGGCCACGCCGATGAA
CATAATGACAAGAAGACGAGCCCTCGGCGTCTCTGTTCTGCCAATTTTAC
TGTTGATGACACTCTTAACTACCACGAATGCCTTTGTCCTTCCCGCTGCC
TCGTCCCTCCCGAACCCACAAACAAGGATGGCCGCCTGCAAGAGCTCTAT
GGCTTCAGAAGCCATAGGCAAGGTTCTAGCAGCGTGCAGCTTACTGCTAG
CTGGGGGGCCGAATCTAGCCGGCGCTATGGCCACGTCCTCTTTCTCCACA
ATGACAACGACGACGACGACGACGGTGGCCCTAAGCACGTCCCCGTCCGG
TGCTGGTGTGGAGGTCCTGAACGACTTCTTGCGGGCCGTCAAGTCGGTCA
AAAACGAGCTTACAAGCGAGAAAGCCACTGACCTTCAATTCGTGCAGAAA
GCTTTTGATGTGGAGGCAGTTACAAACGCAGTCGATGGGACGCTTGACGC
CCAGATGAAAGGGGCAGGCATGAACCAGGCATCGATGGTGGGCAAACGCA
AGATCGTCGACAAGGTGTTAAGGCAAGTGCTCTCGGACGTGATTGTCGTA
GAGGACATACTGCGGGACCTTCCCCCCGAAAAAACCGGCTTAGCAAGATT
AAAGAAGGTGGGGAAACCATTGGGTAAGCTCGAGAAGGACTTACAACGAC
TGACGGGAGCGCTTACTTCAGAAGGAAGTGAGGATACGGCGGGGGCTGCG
GGATTAGCGAAGCCATTGTTTTCTTTGTGTGCAGATGGATATTTGTTGTG
TGATCCGCAGTGAGCGGAGGTAGAGGCAGAAAGATGTATGTAGGAGAAAA
AATAGAGAATGGGAATGACAAGGAACAAAATAGAAATCACTTTGAGT

Coding sequence (CDS) from alignment at scaffold_12:406980..408776-

>mRNA_5079 ID=mRNA_5079|Name=jgi.p|Nanoce1779_2|591328|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_12:406980..408776- (Nannochloropsis oceanica)
ATGAACATAATGACAAGAAGACGAGCCCTCGGCGTCTCTGTTCTGCCAAT
TTTACTGTTGATGACACTCTTAACTACCACGAATGCCTTTGTCCTTCCCG
CTGCCTCGTCCCTCCCGAACCCACAAACAAGGATGGCCGCCTGCAAGAGC
TCTATGGCTTCAGAAGCCATAGGCAAGGTTCTAGCAGCGTGCAGCTTACT
GCTAGCTGGGGGGCCGAATCTAGCCGGCGCTATGGCCACGTCCTCTTTCT
CCACAATGACAACGACGACGACGACGACGGTGGCCCTAAGCACGTCCCCG
TCCGGTGCTGGTGTGGAGGTCCTGAACGACTTCTTGCGGGCCGTCAAGTC
GGTCAAAAACGAGCTTACAAGCGAGAAAGCCACTGACCTTCAATTCGTGC
AGAAAGCTTTTGATGTGGAGGCAGTTACAAACGCAGTCGATGGGACGCTT
GACGCCCAGATGAAAGGGGCAGGCATGAACCAGGCATCGATGGTGGGCAA
ACGCAAGATCGTCGACAAGGTGTTAAGGCAAGTGCTCTCGGACGTGATTG
TCGTAGAGGACATACTGCGGGACCTTCCCCCCGAAAAAACCGGCTTAGCA
AGATTAAAGAAGGTGGGGAAACCATTGGGTAAGCTCGAGAAGGACTTACA
ACGACTGACGGGAGCGCTTACTTCAGAAGGAAGTGAGGATACGGCGGGGG
CTGCGGGATTAGCGAAGCCATTGTTTTCTTTGTGTGCAGATGGATATTTG
TTGTGTGATCCGCAGTGA

Synonyms

Publications