jgi.p|Nanoce1779_2|591326, mRNA_5078 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591326
Unique Name	mRNA_5078
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2175
Alignment location	scaffold_12:404805..406979 +

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Properties


Property Name	Value
TranscriptId	591412
Track	FilteredModels2
ProteinId	591326

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:404805..406979 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591326	gene_5078	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591326	mRNA_5078-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5078	CDS_5078	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:404805..406979+
coding sequence from alignment at scaffold_12:404805..406979+

mRNA sequence

>mRNA_5078 ID=mRNA_5078|Name=jgi.p|Nanoce1779_2|591326|organism=Nannochloropsis oceanica|type=mRNA|length=2175bp
CCCTCCACGCACTCACCTCCACTGACCCCACCGCCGCCGATACCTACTGC
TCGCTCTTCCTCCCGCCCTCTCTTCCTTCCGCTCTTCTCCCATTCCTCTA
CCTCGGTCATAGCCCGGGCGCTCAATGCATCATTCATCGATGGCTTACCT
GCCGAGCAGAAGAGGGAGGGAAAGAGGGATGGAAGAAGGAAGACCCGGTC
TGGGCCACGGCGCTCCTGTTGTACTTCGAGCATGCAGGAGGGGAGGGAAG
TGCTGTGTTGCTTGCGCTATTGGAGTATGTGAGAGCTGTTCCTCCCGTAT
CCCTTCCTCGGCGCCTTGTCCACGCGTTGGCAGCGTTCAAGGTCGCGAGT
GCATGGCCGGGGCTATGGTCTTCGTGCATAAACGTAAGTGGGGATGTGTT
AGGGTTTTTGCACGATATAGTATTGCCTGCCTTGGTACAAGACGAGAAAG
GGAGAGAGGAACGAGGCTTACCAGTGGAGATTATAATGGTTACGACGGCG
GCACTTCGGCATGCGAATTGGAATACACACCCGGGTGGTTTCGCACCTAT
TGTGAAGCTGGCCAGTCGCTTGCTCTTGCTTGTCTCCAGTGCTCTGCCCA
TCTCCTTTCATCTGCAGGAGCAGAAAGAGCAGCAGGAACAGCAGCTGGAG
AATCCTGCAGTTGTGGCCGCGCTTCTGTCGTTGACTAACCAATTGGTTGT
GTACGGTCAGGGCTCGTTTTTCTTGAATCAGCATGAAACGATTCTGGAAT
TGGCTTGGTCTTTTCATAACAGCAACAGTAGCGGTAATTGGAGATGTGGC
AGCAGCAGCAGCAGCAGCGACAGCAACAACAACAGCAGCGCCGTCACATC
TAATGTCCTCGTTTATTGTGTGCTGCTTCTCCATCACTACCGTCTGCAAG
TGCAAAAGGAGGAGCAGCAGCAGCCACCTCCGCCCACATGGGTGTCGCAT
CCATTTTTTAGCCTCCCCTTCTTGCAAATGTGCCTCGAGCCTTGTGTTGA
GGAAGCAGAGGGGCAGCAGATTAAAAAGGCTGCCCTTGGATTGTTGTGTC
GTTTGTACAGCAGCGGGCATGTGTTGCGTGAAGGAGCGAGAGGAGAAGAG
AGAGAAGGAGACGTGGCGAAAGGAGAGGATGGACATACAGAAGTGGAAGG
AGAAGAATTTATTAGGGAAGTTGGAAGGGGCGATAGAGGAGGCGACATGT
GGGGCACCACCGACGACAGACGCCGCCTTCGTCTTCAAGTTCAGACGTGC
GTCCTTCACCGCGACCCCTCCCTCCGTGAGTGTGCCCTTGCCTTGCTCCT
TCAGCTTTGGGATTCCTCCACCCCCACTGCATGGGACATATTTCTCCTCC
AATCGCCGTCACTCAATTCTTCCCTCGCGTCCTCCCTCTACGCTCCTTTA
TATGTTGCTGCTTGTATCGTGCACCCTTCGAAAGAAGGAGCAGCAGCAAC
AGCAGCAACAGCAGCAGAAACAAAAGCAGCAAGAGCAGCAGAAGAGCCAG
CGGTGAGGTTCTTGTTCGACCATCTGCTGCACACGCTGCGTGATACCACG
CGAAACCTGGTTGCGGGGGAAAGAGGCTCCTTACCAGCATGGTTTCCCTC
GGTGCTCTTCCTCCTTCACGCCCTCGCTCGCACGGGACGCCTGGAGCGGA
GGCAACGACAGGAGTTGCGTCTTGCGCTTAATCCTTCGTCCGATAACAGT
AGTAGTAGTAGTAGTACTAGCGGGAAGAAGGGGAGAGAACGATATGCCCT
GGTGTTTGGTGATGCGCGTTTGGTGGACTATGAGGAAGAGGCGGGGCTGG
AGGAGGAGTGGCAGAAGGGAGAGGGGGGGGAAAGGAAGAAGGTATGGTTT
CCCCCGGGGTACCTCTCAATGTACCTATATGATGGCGGCAACGGTCAAAT
AGCAAAGCATCTAAACATGAGACAGGAAAAAGGGAAGGAGGAAAGGGTAG
AACTGCCCACACATCCGCGGGAGGTGGACCTTAAGAGAGTTCTAGAGGAC
TTGCAGATTCACGCGTGAGAGCTGAGAAGGGGGGCTGGGGAAGGAAGAAA
TAAATAGATGCGTAGATTGTTGGAATGAATGTAAAGATGAAATGTCCTGA
GTTCTGCAAATAGAGGGGATTGAGCTAGAAGGAGAGCGCCAATCCATTGA
AGGAAGGAGGAAGACAAAAGAGACC

protein sequence of jgi.p|Nanoce1779_2|591326

>mRNA_5078-protein ID=mRNA_5078-protein|Name=jgi.p|Nanoce1779_2|591326|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MVTTAALRHANWNTHPGGFAPIVKLASRLLLLVSSALPISFHLQEQKEQQ
EQQLENPAVVAALLSLTNQLVVYGQGSFFLNQHETILELAWSFHNSNSSG
NWRCGSSSSSSDSNNNSSAVTSNVLVYCVLLLHHYRLQVQKEEQQQPPPP
TWVSHPFFSLPFLQMCLEPCVEEAEGQQIKKAALGLLCRLYSSGHVLREG
ARGEEREGDVAKGEDGHTEVEGEEFIREVGRGDRGGDMWGTTDDRRRLRL
QVQTCVLHRDPSLRECALALLLQLWDSSTPTAWDIFLLQSPSLNSSLASS
LYAPLYVAACIVHPSKEGAAATAATAAETKAARAAEEPAVRFLFDHLLHT
LRDTTRNLVAGERGSLPAWFPSVLFLLHALARTGRLERRQRQELRLALNP
SSDNSSSSSSTSGKKGRERYALVFGDARLVDYEEEAGLEEEWQKGEGGER
KKVWFPPGYLSMYLYDGGNGQIAKHLNMRQEKGKEERVELPTHPREVDLK
RVLEDLQIHA*

mRNA from alignment at scaffold_12:404805..406979+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5078 ID=mRNA_5078|Name=jgi.p|Nanoce1779_2|591326|organism=Nannochloropsis oceanica|type=mRNA|length=2175bp|location=Sequence derived from alignment at scaffold_12:404805..406979+ (Nannochloropsis oceanica)
CCCTCCACGCACTCACCTCCACTGACCCCACCGCCGCCGATACCTACTGC
TCGCTCTTCCTCCCGCCCTCTCTTCCTTCCGCTCTTCTCCCATTCCTCTA
CCTCGGTCATAGCCCGGGCGCTCAATGCATCATTCATCGATGGCTTACCT
GCCGAGCAGAAGAGGGAGGGAAAGAGGGATGGAAGAAGGAAGACCCGGTC
TGGGCCACGGCGCTCCTGTTGTACTTCGAGCATGCAGGAGGGGAGGGAAG
TGCTGTGTTGCTTGCGCTATTGGAGTATGTGAGAGCTGTTCCTCCCGTAT
CCCTTCCTCGGCGCCTTGTCCACGCGTTGGCAGCGTTCAAGGTCGCGAGT
GCATGGCCGGGGCTATGGTCTTCGTGCATAAACGTAAGTGGGGATGTGTT
AGGGTTTTTGCACGATATAGTATTGCCTGCCTTGGTACAAGACGAGAAAG
GGAGAGAGGAACGAGGCTTACCAGTGGAGATTATAATGGTTACGACGGCG
GCACTTCGGCATGCGAATTGGAATACACACCCGGGTGGTTTCGCACCTAT
TGTGAAGCTGGCCAGTCGCTTGCTCTTGCTTGTCTCCAGTGCTCTGCCCA
TCTCCTTTCATCTGCAGGAGCAGAAAGAGCAGCAGGAACAGCAGCTGGAG
AATCCTGCAGTTGTGGCCGCGCTTCTGTCGTTGACTAACCAATTGGTTGT
GTACGGTCAGGGCTCGTTTTTCTTGAATCAGCATGAAACGATTCTGGAAT
TGGCTTGGTCTTTTCATAACAGCAACAGTAGCGGTAATTGGAGATGTGGC
AGCAGCAGCAGCAGCAGCGACAGCAACAACAACAGCAGCGCCGTCACATC
TAATGTCCTCGTTTATTGTGTGCTGCTTCTCCATCACTACCGTCTGCAAG
TGCAAAAGGAGGAGCAGCAGCAGCCACCTCCGCCCACATGGGTGTCGCAT
CCATTTTTTAGCCTCCCCTTCTTGCAAATGTGCCTCGAGCCTTGTGTTGA
GGAAGCAGAGGGGCAGCAGATTAAAAAGGCTGCCCTTGGATTGTTGTGTC
GTTTGTACAGCAGCGGGCATGTGTTGCGTGAAGGAGCGAGAGGAGAAGAG
AGAGAAGGAGACGTGGCGAAAGGAGAGGATGGACATACAGAAGTGGAAGG
AGAAGAATTTATTAGGGAAGTTGGAAGGGGCGATAGAGGAGGCGACATGT
GGGGCACCACCGACGACAGACGCCGCCTTCGTCTTCAAGTTCAGACGTGC
GTCCTTCACCGCGACCCCTCCCTCCGTGAGTGTGCCCTTGCCTTGCTCCT
TCAGCTTTGGGATTCCTCCACCCCCACTGCATGGGACATATTTCTCCTCC
AATCGCCGTCACTCAATTCTTCCCTCGCGTCCTCCCTCTACGCTCCTTTA
TATGTTGCTGCTTGTATCGTGCACCCTTCGAAAGAAGGAGCAGCAGCAAC
AGCAGCAACAGCAGCAGAAACAAAAGCAGCAAGAGCAGCAGAAGAGCCAG
CGGTGAGGTTCTTGTTCGACCATCTGCTGCACACGCTGCGTGATACCACG
CGAAACCTGGTTGCGGGGGAAAGAGGCTCCTTACCAGCATGGTTTCCCTC
GGTGCTCTTCCTCCTTCACGCCCTCGCTCGCACGGGACGCCTGGAGCGGA
GGCAACGACAGGAGTTGCGTCTTGCGCTTAATCCTTCGTCCGATAACAGT
AGTAGTAGTAGTAGTACTAGCGGGAAGAAGGGGAGAGAACGATATGCCCT
GGTGTTTGGTGATGCGCGTTTGGTGGACTATGAGGAAGAGGCGGGGCTGG
AGGAGGAGTGGCAGAAGGGAGAGGGGGGGGAAAGGAAGAAGGTATGGTTT
CCCCCGGGGTACCTCTCAATGTACCTATATGATGGCGGCAACGGTCAAAT
AGCAAAGCATCTAAACATGAGACAGGAAAAAGGGAAGGAGGAAAGGGTAG
AACTGCCCACACATCCGCGGGAGGTGGACCTTAAGAGAGTTCTAGAGGAC
TTGCAGATTCACGCGTGAGAGCTGAGAAGGGGGGCTGGGGAAGGAAGAAA
TAAATAGATGCGTAGATTGTTGGAATGAATGTAAAGATGAAATGTCCTGA
GTTCTGCAAATAGAGGGGATTGAGCTAGAAGGAGAGCGCCAATCCATTGA
AGGAAGGAGGAAGACAAAAGAGACC

Coding sequence (CDS) from alignment at scaffold_12:404805..406979+

>mRNA_5078 ID=mRNA_5078|Name=jgi.p|Nanoce1779_2|591326|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_12:404805..406979+ (Nannochloropsis oceanica)
ATGGTTACGACGGCGGCACTTCGGCATGCGAATTGGAATACACACCCGGG
TGGTTTCGCACCTATTGTGAAGCTGGCCAGTCGCTTGCTCTTGCTTGTCT
CCAGTGCTCTGCCCATCTCCTTTCATCTGCAGGAGCAGAAAGAGCAGCAG
GAACAGCAGCTGGAGAATCCTGCAGTTGTGGCCGCGCTTCTGTCGTTGAC
TAACCAATTGGTTGTGTACGGTCAGGGCTCGTTTTTCTTGAATCAGCATG
AAACGATTCTGGAATTGGCTTGGTCTTTTCATAACAGCAACAGTAGCGGT
AATTGGAGATGTGGCAGCAGCAGCAGCAGCAGCGACAGCAACAACAACAG
CAGCGCCGTCACATCTAATGTCCTCGTTTATTGTGTGCTGCTTCTCCATC
ACTACCGTCTGCAAGTGCAAAAGGAGGAGCAGCAGCAGCCACCTCCGCCC
ACATGGGTGTCGCATCCATTTTTTAGCCTCCCCTTCTTGCAAATGTGCCT
CGAGCCTTGTGTTGAGGAAGCAGAGGGGCAGCAGATTAAAAAGGCTGCCC
TTGGATTGTTGTGTCGTTTGTACAGCAGCGGGCATGTGTTGCGTGAAGGA
GCGAGAGGAGAAGAGAGAGAAGGAGACGTGGCGAAAGGAGAGGATGGACA
TACAGAAGTGGAAGGAGAAGAATTTATTAGGGAAGTTGGAAGGGGCGATA
GAGGAGGCGACATGTGGGGCACCACCGACGACAGACGCCGCCTTCGTCTT
CAAGTTCAGACGTGCGTCCTTCACCGCGACCCCTCCCTCCGTGAGTGTGC
CCTTGCCTTGCTCCTTCAGCTTTGGGATTCCTCCACCCCCACTGCATGGG
ACATATTTCTCCTCCAATCGCCGTCACTCAATTCTTCCCTCGCGTCCTCC
CTCTACGCTCCTTTATATGTTGCTGCTTGTATCGTGCACCCTTCGAAAGA
AGGAGCAGCAGCAACAGCAGCAACAGCAGCAGAAACAAAAGCAGCAAGAG
CAGCAGAAGAGCCAGCGGTGAGGTTCTTGTTCGACCATCTGCTGCACACG
CTGCGTGATACCACGCGAAACCTGGTTGCGGGGGAAAGAGGCTCCTTACC
AGCATGGTTTCCCTCGGTGCTCTTCCTCCTTCACGCCCTCGCTCGCACGG
GACGCCTGGAGCGGAGGCAACGACAGGAGTTGCGTCTTGCGCTTAATCCT
TCGTCCGATAACAGTAGTAGTAGTAGTAGTACTAGCGGGAAGAAGGGGAG
AGAACGATATGCCCTGGTGTTTGGTGATGCGCGTTTGGTGGACTATGAGG
AAGAGGCGGGGCTGGAGGAGGAGTGGCAGAAGGGAGAGGGGGGGGAAAGG
AAGAAGGTATGGTTTCCCCCGGGGTACCTCTCAATGTACCTATATGATGG
CGGCAACGGTCAAATAGCAAAGCATCTAAACATGAGACAGGAAAAAGGGA
AGGAGGAAAGGGTAGAACTGCCCACACATCCGCGGGAGGTGGACCTTAAG
AGAGTTCTAGAGGACTTGCAGATTCACGCGTGA

Synonyms

Publications