jgi.p|Nanoce1779_2|630770, mRNA_5077 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630770
Unique NamemRNA_5077
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length403
Alignment locationscaffold_12:403489..403891 -

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Properties
Property NameValue
TranscriptId630856
TrackFilteredModels2
ProteinId630770
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:403489..403891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630770gene_5077Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630770mRNA_5077-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5077CDS_5077Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5077 ID=mRNA_5077|Name=jgi.p|Nanoce1779_2|630770|organism=Nannochloropsis oceanica|type=mRNA|length=403bp
ATGCAACGCTGCTCTGCTCAATTGAAACGAACTTGCAAACTGCTGCTGCT
GCTGCTGCTGCTGTTGGTGGTGGTGTTGACGAAGGGCGAGAATCTCAAGG
ACCCGGATGGAGGCGAGGGTCAGGATGAGAAGGGGGGTTGGTCTGCTCCT
ACTGCTGGTGCTGCTTGTCGTCATGGAGGAAGAGGGGGAGGAGGAGGGAG
ACGTTGTGGAGAGGAGGGCGAGTTGCAGTTGCTGTCGCAAGCCGAGGAGG
TAGTTGTCGAGGGAGGAAGGGGAGGGGAAGAGAAGCTTGTTGCTGATAGC
TCCCAGATATTCGGACATGAACAAAAGTAGATGCAGCACAAATCGAGACG
GCTGCTGCTGCTTCATGTCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCT
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protein sequence of jgi.p|Nanoce1779_2|630770

>mRNA_5077-protein ID=mRNA_5077-protein|Name=jgi.p|Nanoce1779_2|630770|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MQRCSAQLKRTCKLLLLLLLLLVVVLTKGENLKDPDGGEGQDEKGGWSAP
TAGAACRHGGRGGGGGRRCGEEGELQLLSQAEEVVVEGGRGGEEKLVADS
SQIFGHEQK*
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mRNA from alignment at scaffold_12:403489..403891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5077 ID=mRNA_5077|Name=jgi.p|Nanoce1779_2|630770|organism=Nannochloropsis oceanica|type=mRNA|length=403bp|location=Sequence derived from alignment at scaffold_12:403489..403891- (Nannochloropsis oceanica)
ATGCAACGCTGCTCTGCTCAATTGAAACGAACTTGCAAACTGCTGCTGCT
GCTGCTGCTGCTGTTGGTGGTGGTGTTGACGAAGGGCGAGAATCTCAAGG
ACCCGGATGGAGGCGAGGGTCAGGATGAGAAGGGGGGTTGGTCTGCTCCT
ACTGCTGGTGCTGCTTGTCGTCATGGAGGAAGAGGGGGAGGAGGAGGGAG
ACGTTGTGGAGAGGAGGGCGAGTTGCAGTTGCTGTCGCAAGCCGAGGAGG
TAGTTGTCGAGGGAGGAAGGGGAGGGGAAGAGAAGCTTGTTGCTGATAGC
TCCCAGATATTCGGACATGAACAAAAGTAGATGCAGCACAAATCGAGACG
GCTGCTGCTGCTTCATGTCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCT
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Coding sequence (CDS) from alignment at scaffold_12:403489..403891-

>mRNA_5077 ID=mRNA_5077|Name=jgi.p|Nanoce1779_2|630770|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_12:403489..403891- (Nannochloropsis oceanica)
ATGCAACGCTGCTCTGCTCAATTGAAACGAACTTGCAAACTGCTGCTGCT
GCTGCTGCTGCTGTTGGTGGTGGTGTTGACGAAGGGCGAGAATCTCAAGG
ACCCGGATGGAGGCGAGGGTCAGGATGAGAAGGGGGGTTGGTCTGCTCCT
ACTGCTGGTGCTGCTTGTCGTCATGGAGGAAGAGGGGGAGGAGGAGGGAG
ACGTTGTGGAGAGGAGGGCGAGTTGCAGTTGCTGTCGCAAGCCGAGGAGG
TAGTTGTCGAGGGAGGAAGGGGAGGGGAAGAGAAGCTTGTTGCTGATAGC
TCCCAGATATTCGGACATGAACAAAAGTAG
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Synonyms
Publications