jgi.p|Nanoce1779_2|630769, mRNA_5076 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630769
Unique Name	mRNA_5076
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1428
Alignment location	scaffold_12:401565..404091 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630855
Track	FilteredModels2
ProteinId	630769

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:401565..404091 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630769	gene_5076	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630769	mRNA_5076-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5076	CDS_5076	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:401565..404091+
coding sequence from alignment at scaffold_12:401565..404091+

mRNA sequence

>mRNA_5076 ID=mRNA_5076|Name=jgi.p|Nanoce1779_2|630769|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp
CACGACAGACCGCCCTTTCTCCTACGTCACTATTTCTCTATAGAATGATG
ATGCAGCCTCCGCTCGAGCAGCTTCTCATCCCGAGCATCCACGACGGAGA
CTGCCACGAGACGGTCGTGTGCGATGAGGAGGCGCAGACCCGGTTCTGTC
TGGAGTGTGCTCTAGAGTGCCTCAAGGAGAAGGATCTTCTCGTCGTTCGC
AAGCGGCGCCTCTTGCGAGGCATAGACGCAGCTCTCGAGCGCCTGAGTGT
GGCCTGCAACATTTACGACAGCAATAGCGGCAGCTTCATGGAGAGCGGCA
GCGGGTGCGAGGACGAAGGACTGATCATGATGGTGACGCAGAGGCGAGCA
GGCCCGCGACCAGTTGTGGTCGCTGCGAATCACATCCTCTTCTCTTTTCT
TCAGTATGTCATTCTTCAACCAATGGATGGCAAAGATCGAGCCGAGATGG
TGCCAGCCTTGCTCAAGACCAGCATTCGTCTCTTCACCTTGGTGACGTGG
GACGACCAAGTACTAGCATCGGTGTACGGCCCTTTGCTTGATGCCTGCCG
CGCACAAGGCACGCGTGAGAGCTTGCACCTCATTCAGCTTTTATCTGCCA
TGTTGAATGCTGCTAATGATGATGGGTCTATCCCTCATCTCGATCGCTTG
TTGGAAGGAGGGCACGAGGAAGTCGGAGAAAGGGAGGCAGAGGTGGAAGA
GGGATTGTTTGACGCGACCTTACCCTCTTTCACTTCGTCACTTGCGGCCT
TTGTTAAGATGCTTGCAGATTACTTCGATGGCTGCCTGTCGGAGTCGTTG
CAGCAGCAGCCCAAGGGGAAGGAGGAGGACGAGGAGGACGAGGAGGAGAA
GAAGGAGGAGGAGAAAGGGCGGTAATGGCAGAGGCGATGCTACAGAATGG
GACAGTAGATTATTGTTTGGAGGGACTTCGGAACGCTTTAACTTCCTCAT
CTTTTCACCACCACCAAAATCACCACCGTAACAACCAGCTGCAGCGACAG
CAGCAGCAGCAACAGCAACGCCAATGTGTGCGTTTGACGCATCGGTTGTG
TCGTTTGTTGTGGGTTTTGAGTAGAGCGGAGCCTCTTGGTTTTTTTGCTC
CTCAGCGTTTCAGACCGTTGTTGATGAACGAACTCGTAGCATTGCTTCAG
CGGTTGGAAATAGCCTCGACGGCAGGAGGAGGAGGAGAAGGTGATCAGGA
AGAGGCCAATATATATCAAGCGGAGGAGGACTGGATTGAGGAAGACAACG
AGGGATTTGGAAAGAGTGCGCCGATACTTGTGTTAGATATTCTGCAGGCG
AGTTTGGCCCAGACGAGGGTGATTTATGATGAAGAGATAATGGAGTCCTT
GCTAGAGATGCTTCCTAGGTTGCAACAAGAAGAAGAAGAAGCAGCAGCAG
CCGCTGCTGCCACGACTGCGCGTTTACG

protein sequence of jgi.p|Nanoce1779_2|630769

>mRNA_5076-protein ID=mRNA_5076-protein|Name=jgi.p|Nanoce1779_2|630769|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MMMQPPLEQLLIPSIHDGDCHETVVCDEEAQTRFCLECALECLKEKDLLV
VRKRRLLRGIDAALERLSVACNIYDSNSGSFMESGSGCEDEGLIMMVTQR
RAGPRPVVVAANHILFSFLQYVILQPMDGKDRAEMVPALLKTSIRLFTLV
TWDDQVLASVYGPLLDACRAQGTRESLHLIQLLSAMLNAANDDGSIPHLD
RLLEGGHEEVGEREAEVEEGLFDATLPSFTSSLAAFVKMLADYFDGCLSE
SLQQQPKGKEEDEEDEEEKKEEEKGR*

mRNA from alignment at scaffold_12:401565..404091+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5076 ID=mRNA_5076|Name=jgi.p|Nanoce1779_2|630769|organism=Nannochloropsis oceanica|type=mRNA|length=2527bp|location=Sequence derived from alignment at scaffold_12:401565..404091+ (Nannochloropsis oceanica)
CACGACAGACCGCCCTTTCTCCTACGTCACTATTTCTCTATAGAATGATG
ATGCAGCCTCCGCTCGAGCAGCTTCTCATCCCGAGCATCCACGACGGAGA
CTGCCACGAGACGGTCGTGTGCGATGAGGAGGCGCAGACCCGGTTCTGTC
TGGAGTGTGCTCTAGAGTGCCTCAAGGAGAAGGATCTTCTCGTCGTTCGC
AAGCGGCGCCTCTTGCGAGGCATAGACGCAGCTCTCGAGCGCCTGAGTGT
GGCCTGCAACATTTACGACAGCAATAGCGGCAGCTTCATGGAGAGCGGCA
GCGGGTGCGAGGACGAAGGACTGATCATGATGGTGACGCAGAGGCGAGCA
GGCCCGCGACCAGTTGTGGTCGCTGCGAATCACATCCTCTTCTCTTTTCT
TCAGTATGTCATTCTTCAACCAATGGATGGCAAAGATCGAGCCGAGATGG
TGCCAGCCTTGCTCAAGACCAGCATTCGTCTCTTCACCTTGGTGACGTGG
GACGACCAAGTACTAGCATCGGTGTACGGCCCTTTGCTTGATGCCTGCCG
CGCACAAGGCACGCGTGAGAGCTTGCACCTCATTCAGCTTTTATCTGCCA
TGTTGAATGCTGCTAATGATGATGGGTCTATCCCTCATCTCGATCGCTTG
TTGGAAGGAGGGCACGAGGAAGTCGGAGAAAGGGAGGCAGAGGTGGAAGA
GGGATTGTTTGACGCGACCTTACCCTCTTTCACTTCGTCACTTGCGGCCT
TTGTTAAGATGCTTGCAGGTGAATGCTTTATTAACGGCCTCGGATCGCTT
CCGAGCAACCAGCGACAACGTCATCATAGCCTGATCGAGGAAGGGGACGA
AGAGAAGCATGTGGAACTCCTGCACCTCATCCTCCTCATCATCCAAGCCC
CCCGCGCCAAGACCTTCCTCCTACAGACGACAAGCGTCCTCCCTCGATAT
CTCAACCAAATTCAAAGCCTCGCTCATCTCGCGCAGGGTCCCTCTGCTGC
TGCTGCGTTAGGGCGGGGTGTGACAGGTGCTTGGGCCAAAAACCTCCTCG
CCCTAGCCCTGCTGCTTTTACCACCCTCCTTCTCCTCCTTCTCCTTATCT
ACCACCATTGCCATCCACGACCAAAACAACAACAGGCGAAAGCGGCGCAG
AGGTGGAAGGGAGGGGGAAGTAAGGAAGGGGGAAGTGGTTTTGCTACGCC
CGTACCACACGACGATCGCGACGACCTTGGCCAAGGGCCTTCTGGTCAGC
ACCGACATGGATCTAGCTATTGGCGCTGCTTCTTACTTGCTGAGATTACT
TCGATGGCTGCCTGTCGGAGTCGTTGCAGCAGCAGCCCAAGGGGAAGGAG
GAGGACGAGGAGGACGAGGAGGAGAAGAAGGAGGAGGAGAAAGGGCGGTA
ATGGCAGAGGCGATGCTACAGAATGGGACAGTAGATTATTGTTTGGAGGG
ACTTCGGAACGCTTTAACTTCCTCATCTTTTCACCACCACCAAAATCACC
ACCGTAACAACCAGCTGCAGCGACAGCAGCAGCAGCAACAGCAACGCCAA
TGTGTGCGTTTGACGCATCGGTTGTGTCGTTTGTTGTGGGTTTTGAGTAG
AGCGGAGCCTCTTGGTTTTTTTGCTCCTCAGCGTTTCAGACCGTTGTTGA
TGAACGAACTCGTAGCATTGCTTCAGCGGTTGGAAATAGCCTCGACGGCA
GGAGGAGGAGGAGAAGGTGATCAGGAAGAGGCCAATATATATCAAGCGGA
GGAGGACTGGATTGAGGAAGACAACGAGGGATTTGGAAAGAGTGCGCCGA
TACTTGTGTTAGATATTCTGCAGGCGAGTTTGGCCCAGACGAGGGTGATT
TATGATGAAGAGATAATGGAGTCCTTGCTAGAGATGCTTCCTAGGTTGCA
ACAAGAAGAAGAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGAAGACATGAAGCAGCAGCAGCCGTCTCGATTTGTGCTGCATCTA
CTTTTGTTCATGTCCGAATATCTGGGAGCTATCAGCAACAAGCTTCTCTT
CCCCTCCCCTTCCTCCCTCGACAACTACCTCCTCGGCTTGCGACAGCAAC
TGCAACTCGCCCTCCTCTCCACAACGTCTCCCTCCTCCTCCCCCTCTTCC
TCCATGACGACAAGCAGCACCAGCAGTAGGAGCAGACCAACCCCCCTTCT
CATCCTGACCCTCGCCTCCATCCGGGTCCTTGAGATTCTCGCCCTTCGTC
AACACCACCACCAACAGCAGCAGCAGCAGCAGCAGCAGTTTGCAAGTTCG
TTTCAATTGAGCAGAGCAGCGTTGCATCTGCTGGCGCTGTTTGATGTCAC
CAGTCCTCGGACAGCAGGAGAAGAATATGCAGTCTGTCGGTTCTTCCTTG
ACCTCCTTACTACTACTACTACTACTACTAATATTACTACTACTACTACT
ACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACAGCTGCTGC
CGCTGCTGCCACGACTGCGCGTTTACG

Coding sequence (CDS) from alignment at scaffold_12:401565..404091+

>mRNA_5076 ID=mRNA_5076|Name=jgi.p|Nanoce1779_2|630769|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_12:401565..404091+ (Nannochloropsis oceanica)
ATGATGATGCAGCCTCCGCTCGAGCAGCTTCTCATCCCGAGCATCCACGA
CGGAGACTGCCACGAGACGGTCGTGTGCGATGAGGAGGCGCAGACCCGGT
TCTGTCTGGAGTGTGCTCTAGAGTGCCTCAAGGAGAAGGATCTTCTCGTC
GTTCGCAAGCGGCGCCTCTTGCGAGGCATAGACGCAGCTCTCGAGCGCCT
GAGTGTGGCCTGCAACATTTACGACAGCAATAGCGGCAGCTTCATGGAGA
GCGGCAGCGGGTGCGAGGACGAAGGACTGATCATGATGGTGACGCAGAGG
CGAGCAGGCCCGCGACCAGTTGTGGTCGCTGCGAATCACATCCTCTTCTC
TTTTCTTCAGTATGTCATTCTTCAACCAATGGATGGCAAAGATCGAGCCG
AGATGGTGCCAGCCTTGCTCAAGACCAGCATTCGTCTCTTCACCTTGGTG
ACGTGGGACGACCAAGTACTAGCATCGGTGTACGGCCCTTTGCTTGATGC
CTGCCGCGCACAAGGCACGCGTGAGAGCTTGCACCTCATTCAGCTTTTAT
CTGCCATGTTGAATGCTGCTAATGATGATGGGTCTATCCCTCATCTCGAT
CGCTTGTTGGAAGGAGGGCACGAGGAAGTCGGAGAAAGGGAGGCAGAGGT
GGAAGAGGGATTGTTTGACGCGACCTTACCCTCTTTCACTTCGTCACTTG
CGGCCTTTGTTAAGATGCTTGCAGATTACTTCGATGGCTGCCTGTCGGAG
TCGTTGCAGCAGCAGCCCAAGGGGAAGGAGGAGGACGAGGAGGACGAGGA
GGAGAAGAAGGAGGAGGAGAAAGGGCGGTAAATGATGATGCAGCCTCCGC
TCGAGCAGCTTCTCATCCCGAGCATCCACGACGGAGACTGCCACGAGACG
GTCGTGTGCGATGAGGAGGCGCAGACCCGGTTCTGTCTGGAGTGTGCTCT
AGAGTGCCTCAAGGAGAAGGATCTTCTCGTCGTTCGCAAGCGGCGCCTCT
TGCGAGGCATAGACGCAGCTCTCGAGCGCCTGAGTGTGGCCTGCAACATT
TACGACAGCAATAGCGGCAGCTTCATGGAGAGCGGCAGCGGGTGCGAGGA
CGAAGGACTGATCATGATGGTGACGCAGAGGCGAGCAGGCCCGCGACCAG
TTGTGGTCGCTGCGAATCACATCCTCTTCTCTTTTCTTCAGTATGTCATT
CTTCAACCAATGGATGGCAAAGATCGAGCCGAGATGGTGCCAGCCTTGCT
CAAGACCAGCATTCGTCTCTTCACCTTGGTGACGTGGGACGACCAAGTAC
TAGCATCGGTGTACGGCCCTTTGCTTGATGCCTGCCGCGCACAAGGCACG
CGTGAGAGCTTGCACCTCATTCAGCTTTTATCTGCCATGTTGAATGCTGC
TAATGATGATGGGTCTATCCCTCATCTCGATCGCTTGTTGGAAGGAGGGC
ACGAGGAAGTCGGAGAAAGGGAGGCAGAGGTGGAAGAGGGATTGTTTGAC
GCGACCTTACCCTCTTTCACTTCGTCACTTGCGGCCTTTGTTAAGATGCT
TGCAGATTACTTCGATGGCTGCCTGTCGGAGTCGTTGCAGCAGCAGCCCA
AGGGGAAGGAGGAGGACGAGGAGGACGAGGAGGAGAAGAAGGAGGAGGAG
AAAGGGCGGTAA

Synonyms

Publications