jgi.p|Nanoce1779_2|591319, mRNA_5075 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591319
Unique Name	mRNA_5075
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2277
Alignment location	scaffold_12:398841..401254 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591405
Track	FilteredModels2
ProteinId	591319

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:398841..401254 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591319	gene_5075	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591319	mRNA_5075-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5075	CDS_5075	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:398841..401254+
coding sequence from alignment at scaffold_12:398841..401254+

mRNA sequence

>mRNA_5075 ID=mRNA_5075|Name=jgi.p|Nanoce1779_2|591319|organism=Nannochloropsis oceanica|type=mRNA|length=2277bp
GGATGGTGGTGGTGGTAGGGCGGGGGGAGGTGATCGACGCCGGACTGATG
GTGGGCCGCCGCGCTCGTATGGCGGCGGTAGTGCTGGTACCAAGCGTGGC
GGTAGTGGAAGTGACAGTAGAGGAGGAGCCGGACGAGATCCGTCGCGGAA
GGATGATTTTCTAGCCCCTGATTTTGACTTGGAGGACCTGTTGAAGGACG
ATGGGGAAGGAGTTAACTGGAAACCAAAACAAGAACGACCTGACCCGCCT
TCGCGTCGGAAAAGCAGCACGGGTGGAGCACCTGCAGATCGACGAGGGGG
CTATGGAAGTTATGGAGGGAGTGCTGGGCCGCGCCCTCGTCCAGAAAGGG
AAGGACGAAGTGTAAATTCGAACCCGAAGGAAGTGAGTGGGGAGGAGTAC
CGTCAGAAGCGACGGCTGGAAGGAGCCCGTCGTCGGCCTGAGGGAAGGCC
GCAAGCGAGGGGGGATCAGCAGACGCCGGTATGGAATAGGAGGGAGGCGG
AGGAGGACTTTGGTAAGCGGGAATTCGAGTTTGAGGGAGAGGAAGGGCGG
GATGACGAGGAGGAGGAGGAGTATGGCCTGGAGCCGATGGAGTACTATGA
GGAGCGTTTTGCTGGGGAGGCGTTTTTTGGCGGTGAGAACAATAACGAGG
ACGAGGAGGACGACGATGATGGCGGCAGAGGGAGAGGAAGGATGGGGAAG
AGGGAGGCCGCGGCAAGGCTGGCGGACGATTTCTTCTTCAGTCGCAAGGC
GTTTGATGAAATTGGAGCGAGCGCCGAGGCGCAGGCAGCCATGCAGTCTC
TGGGAATCTCCCGCCCATCAAAGATTCAAAATATTGCTTATCCTCACGTA
TTGGCGGGCACCTCATGCATCCTTGCCGAGCAAACGGGGTCGGGGAAGAC
GCTCGCTTACCTACTCCCCCTCCTTCAACGGCTGCGTCAGCTGGAGGCCG
CCGCAACTGCAGCAGGCGAATCCCCGCGCGCTCCTCCTAAATCACCACGG
GTGGTTGTGTTGGCGCCGACGGCAGAGCTTGCTGCACAAGTGGCAACGGT
TGCAAGGGCGTTGACGAAACATTTACCGTTGCGGGTGTGTTGTGTTACGG
GGGGGAAGAACCCGCGGACGCAGGGAGAGATGCTGAAAAGTGGGGTAGAT
GTCTTGATTGGCACCCCTGGGAGGGTGCAATATCTGTTGGAGGAAGGCAA
GGTATTGCTGGGGGGGATGCAGGCCTTAGTCCTTGATGAGGTGGACGTGA
TGTTTTTGGACGATTCGTTCGATCTTTCAGTGATTGGTGCTGCTGCTCCT
GCTGCTACTCAATTCTTGTTTGTCACAGCGACCTTGCCCGTGGCGGTGGC
GGATCAGATAAGCAAAGAGTTTCCAGGAGTTAAGAAGTTGTGGGGTCCGG
GGCTGCATAAGATCGCGCCTCAGGTGGAGGAAGTGTTGGTTGATTGTAGC
GGGCCAATGGAGGAGGATCGGAATGAGGAGACGGCATTCGTGCGGAAGAG
GGACATGCTTGTCCAGAACCTGCTTAAGCACCAAGTGAGGCGCTCCTTGG
TGTTCTGCAACTCCATCCCGACCTGTCGAAAAGTGGAAAATGCCTTGCGG
AGGGCCGACCGATCAGGGAACAGGTGGCAAATCCTGGCTTATCACTCCGC
AGTGAACCCGGCGGACCGAGAGAAACATCTAGGTATTTTCTCTTCAAGAG
TAGAGAGGCCCTTGGTGATGGTATGTACGGATAGAACATCGCGGGGCGTA
GACTTTGATAAGGCAAATGTGGAGCACGTGGTGCTGTTTGATTTCCCGCG
GGATCCCAGTGAGTATGTTCGGAGGGTTGGGAGGACGGGAAGGGCGGGAA
GGACGGGGCGGGTGACGGCGTTGGTGTTGGGAAAACAGGTGGGCTTGGCC
AGGTCGATTATGGAGGGAAATAGTAAGGGGGCACGAGTGCATCCGGTGCC
GAACTAAGTGAGGACGAGGGACGAGGGGGATAGGGGAAAGGGAGGAGAGA
CGATCTGAGAAAAAGATCCAAATTGAAGAATGGAGACTTGGAGAAGACGA
TGAAAAAGGAAAAACAATTGGGGAATAAAGAAAGGTATTTAAAAGAAGAA
GAAGAAGATTAAAAAAGAAATGGAATTACGACGACGACGAGCACATGTCG
GGGAGTTGGCTGGAAAGAAAGTGGGAGCGTATTCTCTACTTCGCATGAAA
GTCTCGGGAAGCTTCTAGCAAAAGCGTCTCCTCCTCAACCTCCTTGTTTA
AAAGGGAAAACACAAATTGAAACAGGC

protein sequence of jgi.p|Nanoce1779_2|591319

>mRNA_5075-protein ID=mRNA_5075-protein|Name=jgi.p|Nanoce1779_2|591319|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MEYYEERFAGEAFFGGENNNEDEEDDDDGGRGRGRMGKREAAARLADDFF
FSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQT
GSGKTLAYLLPLLQRLRQLEAAATAAGESPRAPPKSPRVVVLAPTAELAA
QVATVARALTKHLPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYL
LEEGKVLLGGMQALVLDEVDVMFLDDSFDLSVIGAAAPAATQFLFVTATL
PVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETA
FVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQIL
AYHSAVNPADREKHLGIFSSRVERPLVMVCTDRTSRGVDFDKANVEHVVL
FDFPRDPSEYVRRVGRTGRAGRTGRVTALVLGKQVGLARSIMEGNSKGAR
VHPVPN*

mRNA from alignment at scaffold_12:398841..401254+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5075 ID=mRNA_5075|Name=jgi.p|Nanoce1779_2|591319|organism=Nannochloropsis oceanica|type=mRNA|length=2414bp|location=Sequence derived from alignment at scaffold_12:398841..401254+ (Nannochloropsis oceanica)
GGATGGTGGTGGTGGTAGGGCGGGGGGAGGTGATCGACGCCGGACTGATG
GTGGGCCGCCGCGCTCGTATGGCGGCGGTAGTGCTGGTACCAAGCGTGGC
GGTAGTGGAAGTGACAGTAGAGGAGGAGCCGGACGAGATCCGTCGCGGAA
GGATGATTTTCTAGCCCCTGATTTTGACTTGGAGGACCTGTTGAAGGACG
ATGGGGAAGGAGTTAACTGGAAACCAAAACAAGAACGACCTGACCCGCCT
TCGCGTCGGAAAAGCAGCACGGGTGGAGCACCTGCAGATCGACGAGGGGG
CTATGGAAGTTATGGAGGGAGTGCTGGGCCGCGCCCTCGTCCAGAAAGGG
AAGGACGAAGTGTAAATTCGAACCCGAAGGAAGTGAGTGGGGAGGAGTAC
CGTCAGAAGCGACGGCTGGAAGGAGCCCGTCGTCGGCCTGAGGGAAGGCC
GCAAGCGAGGGGGGATCAGCAGACGCCGGTATGGAATAGGAGGGAGGCGG
AGGAGGACTTTGGTAAGCGGGAATTCGAGTTTGAGGGAGAGGAAGGGCGG
GATGACGAGGAGGAGGAGGAGTATGGCCTGGAGCCGATGGAGTACTATGA
GGAGCGTTTTGCTGGGGAGGCGTTTTTTGGCGGTGAGAACAATAACGAGG
ACGAGGAGGACGACGATGATGGCGGCAGAGGGAGAGGAAGGATGGGGAAG
AGGGAGGCCGCGGCAAGGCTGGCGGACGATTTCTTCTTCAGTCGCAAGGC
GTTTGATGAAATTGGAGCGAGCGCCGAGGCGCAGGCAGCCATGCAGTCTC
TGGGAATCTCCCGCCCATCAAAGATTCAAAATATTGCTTATCCTCACGTA
TTGGCGGGCACCTCATGCATCCTTGCCGAGCAAACGGGGTCGGGGAAGAC
GCTCGCTTACCTACTCCCCCTCCTTCAACGGCTGCGTCAGCTGGAGGCCG
CCGCAACTGCAGCAGGCGAATCCCCGCGCGCTCCTCCTAAATCACCACGG
GTGGTTGTGTTGGCGCCGACGGCAGAGCTTGCTGCACAAGTGGCAACGGT
TGCAAGGGCGTTGACGAAACATTTACCGTTGCGGGTGTGTTGTGTTACGG
GGGGGAAGAACCCGCGGACGCAGGGAGAGATGCTGAAAAGTGGGGTAGAT
GTCTTGATTGGCACCCCTGGGAGGGTGCAATATCTGTTGGAGGAAGGCAA
GGTATTGCTGGGGGGGATGCAGGCCTTAGTCCTTGATGAGGTGGACGTGA
TGTTTTTGGACGATTCGTTCGATCTTTCAGTGATTGGTGCTGCTGCTCCT
GCTGCTACTCAATTCTTGTTTGTCACAGCGACCTTGCCCGTGGCGGTGGC
GGATCAGATAAGCAAAGAGTTTCCAGGAGTTAAGAAGTTGTGGGGTCCGG
GGCTGCATAAGATCGCGCCTCAGGTGGAGGAAGTGTTGGTTGATTGTAGC
GGGCCAATGGAGGAGGATCGGAATGAGGAGACGGCATTCGTGCGGAAGAG
GGTAAGACTGCGGGAAGACGATAAAAGGGAGGGGAGGGAGGATGTTTGTT
TCTTCGTTGTATTCCCACGAGTCGTCGACGAAAAGGCGCGAATAGCCACA
AGAACTCATCCTTTCCTTCCTCGGCTACATCACCACAGGACATGCTTGTC
CAGAACCTGCTTAAGCACCAAGTGAGGCGCTCCTTGGTGTTCTGCAACTC
CATCCCGACCTGTCGAAAAGTGGAAAATGCCTTGCGGAGGGCCGACCGAT
CAGGGAACAGGTGGCAAATCCTGGCTTATCACTCCGCAGTGAACCCGGCG
GACCGAGAGAAACATCTAGGTATTTTCTCTTCAAGAGTAGAGAGGCCCTT
GGTGATGGTATGTACGGATAGAACATCGCGGGGCGTAGACTTTGATAAGG
CAAATGTGGAGCACGTGGTGCTGTTTGATTTCCCGCGGGATCCCAGTGAG
TATGTTCGGAGGGTTGGGAGGACGGGAAGGGCGGGAAGGACGGGGCGGGT
GACGGCGTTGGTGTTGGGAAAACAGGTGGGCTTGGCCAGGTCGATTATGG
AGGGAAATAGTAAGGGGGCACGAGTGCATCCGGTGCCGAACTAAGTGAGG
ACGAGGGACGAGGGGGATAGGGGAAAGGGAGGAGAGACGATCTGAGAAAA
AGATCCAAATTGAAGAATGGAGACTTGGAGAAGACGATGAAAAAGGAAAA
ACAATTGGGGAATAAAGAAAGGTATTTAAAAGAAGAAGAAGAAGATTAAA
AAAGAAATGGAATTACGACGACGACGAGCACATGTCGGGGAGTTGGCTGG
AAAGAAAGTGGGAGCGTATTCTCTACTTCGCATGAAAGTCTCGGGAAGCT
TCTAGCAAAAGCGTCTCCTCCTCAACCTCCTTGTTTAAAAGGGAAAACAC
AAATTGAAACAGGC

Coding sequence (CDS) from alignment at scaffold_12:398841..401254+

>mRNA_5075 ID=mRNA_5075|Name=jgi.p|Nanoce1779_2|591319|organism=Nannochloropsis oceanica|type=CDS|length=2742bp|location=Sequence derived from alignment at scaffold_12:398841..401254+ (Nannochloropsis oceanica)
ATGGAGTACTATGAGGAGCGTTTTGCTGGGGAGGCGTTTTTTGGCGGTGA
GAACAATAACGAGGACGAGGAGGACGACGATGATGGCGGCAGAGGGAGAG
GAAGGATGGGGAAGAGGGAGGCCGCGGCAAGGCTGGCGGACGATTTCTTC
TTCAGTCGCAAGGCGTTTGATGAAATTGGAGCGAGCGCCGAGGCGCAGGC
AGCCATGCAGTCTCTGGGAATCTCCCGCCCATCAAAGATTCAAAATATTG
CTTATCCTCACGTATTGGCGGGCACCTCATGCATCCTTGCCGAGCAAACG
GGGTCGGGGAAGACGCTCGCTTACCTACTCCCCCTCCTTCAACGGCTGCG
TCAGCTGGAGGCCGCCGCAACTGCAGCAGGCGAATCCCCGCGCGCTCCTC
CTAAATCACCACGGGTGGTTGTGTTGGCGCCGACGGCAGAGCTTGCTGCA
CAAGTGGCAACGGTTGCAAGGGCGTTGACGAAACATTTACCGTTGCGGGT
GTGTTGTGTTACGGGGGGGAAGAACCCGCGGACGCAGGGAGAGATGCTGA
AAAGTGGGGTAGATGTCTTGATTGGCACCCCTGGGAGGGTGCAATATCTG
TTGGAGGAAGGCAAGGTATTGCTGGGGGGGATGCAGGCCTTAGTCCTTGA
TGAGGTGGACGTGATGTTTTTGGACGATTCGTTCGATCTTTCAGTGATTG
GTGCTGCTGCTCCTGCTGCTACTCAATTCTTGTTTGTCACAGCGACCTTG
CCCGTGGCGGTGGCGGATCAGATAAGCAAAGAGTTTCCAGGAGTTAAGAA
GTTGTGGGGTCCGGGGCTGCATAAGATCGCGCCTCAGGTGGAGGAAGTGT
TGGTTGATTGTAGCGGGCCAATGGAGGAGGATCGGAATGAGGAGACGGCA
TTCGTGCGGAAGAGGGACATGCTTGTCCAGAACCTGCTTAAGCACCAAGT
GAGGCGCTCCTTGGTGTTCTGCAACTCCATCCCGACCTGTCGAAAAGTGG
AAAATGCCTTGCGGAGGGCCGACCGATCAGGGAACAGGTGGCAAATCCTG
GCTTATCACTCCGCAGTGAACCCGGCGGACCGAGAGAAACATCTAGGTAT
TTTCTCTTCAAGAGTAGAGAGGCCCTTGGTGATGGTATGTACGGATAGAA
CATCGCGGGGCGTAGACTTTGATAAGGCAAATGTGGAGCACGTGGTGCTG
TTTGATTTCCCGCGGGATCCCAGTGAGTATGTTCGGAGGGTTGGGAGGAC
GGGAAGGGCGGGAAGGACGGGGCGGGTGACGGCGTTGGTGTTGGGAAAAC
AGGTGGGCTTGGCCAGGTCGATTATGGAGGGAAATAGTAAGGGGGCACGA
GTGCATCCGGTGCCGAACTAAATGGAGTACTATGAGGAGCGTTTTGCTGG
GGAGGCGTTTTTTGGCGGTGAGAACAATAACGAGGACGAGGAGGACGACG
ATGATGGCGGCAGAGGGAGAGGAAGGATGGGGAAGAGGGAGGCCGCGGCA
AGGCTGGCGGACGATTTCTTCTTCAGTCGCAAGGCGTTTGATGAAATTGG
AGCGAGCGCCGAGGCGCAGGCAGCCATGCAGTCTCTGGGAATCTCCCGCC
CATCAAAGATTCAAAATATTGCTTATCCTCACGTATTGGCGGGCACCTCA
TGCATCCTTGCCGAGCAAACGGGGTCGGGGAAGACGCTCGCTTACCTACT
CCCCCTCCTTCAACGGCTGCGTCAGCTGGAGGCCGCCGCAACTGCAGCAG
GCGAATCCCCGCGCGCTCCTCCTAAATCACCACGGGTGGTTGTGTTGGCG
CCGACGGCAGAGCTTGCTGCACAAGTGGCAACGGTTGCAAGGGCGTTGAC
GAAACATTTACCGTTGCGGGTGTGTTGTGTTACGGGGGGGAAGAACCCGC
GGACGCAGGGAGAGATGCTGAAAAGTGGGGTAGATGTCTTGATTGGCACC
CCTGGGAGGGTGCAATATCTGTTGGAGGAAGGCAAGGTATTGCTGGGGGG
GATGCAGGCCTTAGTCCTTGATGAGGTGGACGTGATGTTTTTGGACGATT
CGTTCGATCTTTCAGTGATTGGTGCTGCTGCTCCTGCTGCTACTCAATTC
TTGTTTGTCACAGCGACCTTGCCCGTGGCGGTGGCGGATCAGATAAGCAA
AGAGTTTCCAGGAGTTAAGAAGTTGTGGGGTCCGGGGCTGCATAAGATCG
CGCCTCAGGTGGAGGAAGTGTTGGTTGATTGTAGCGGGCCAATGGAGGAG
GATCGGAATGAGGAGACGGCATTCGTGCGGAAGAGGGACATGCTTGTCCA
GAACCTGCTTAAGCACCAAGTGAGGCGCTCCTTGGTGTTCTGCAACTCCA
TCCCGACCTGTCGAAAAGTGGAAAATGCCTTGCGGAGGGCCGACCGATCA
GGGAACAGGTGGCAAATCCTGGCTTATCACTCCGCAGTGAACCCGGCGGA
CCGAGAGAAACATCTAGGTATTTTCTCTTCAAGAGTAGAGAGGCCCTTGG
TGATGGTATGTACGGATAGAACATCGCGGGGCGTAGACTTTGATAAGGCA
AATGTGGAGCACGTGGTGCTGTTTGATTTCCCGCGGGATCCCAGTGAGTA
TGTTCGGAGGGTTGGGAGGACGGGAAGGGCGGGAAGGACGGGGCGGGTGA
CGGCGTTGGTGTTGGGAAAACAGGTGGGCTTGGCCAGGTCGATTATGGAG
GGAAATAGTAAGGGGGCACGAGTGCATCCGGTGCCGAACTAA

Synonyms

Publications