jgi.p|Nanoce1779_2|591314, mRNA_5072 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591314
Unique NamemRNA_5072
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length871
Alignment locationscaffold_12:394324..395194 -

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Properties
Property NameValue
TranscriptId591400
TrackFilteredModels2
ProteinId591314
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:394324..395194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591314gene_5072Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591314mRNA_5072-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5072CDS_5072Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5072 ID=mRNA_5072|Name=jgi.p|Nanoce1779_2|591314|organism=Nannochloropsis oceanica|type=mRNA|length=871bp
GGCACCGCCACCTTCATACAACAAACAACGAGGCAACAGTGCCCGCGATG
TCGTCGACATCCTCCTCCTCCTCCTCCTCCTCCTCATCCTCAGCAGCCGC
AGCGGCCAATGAGGAGGAAGCCGTACGGGCTAAATCCATGGGGGTCCAAG
CTTTGCAACGGAGTGAGTATGAGCGCGCTGTCCGGCTACTGGGCATCAGC
AACCGCCTTTCGCCCAACGCTGACACCCGAGGTCTCCTCAATTCTGCTTT
GGCAGGCCAAGCCCGCATGGACAGTGGCCGTGCCTCAGCGCACCGTGCCG
CTGCTGCGACTGCCCCACCATGGTCAGATCAACATTCATTTGGTCGCTTC
ATGATCAAGGTTGACGCGGCGATGGACTGGGCGTGGGAGTATTTGCCCAC
GTCAGCAAAAGGCGCGATCACATGCTACATTCATCCATCGAGTCGCAAAC
CTCTGGCATACATTTCAATCCTTATTCTGGGTATGTGCTTGTACAGGTTT
GTGTTGCGTGGCCCGCCATTGGCATTTGGACGGCTACCGGGTGATATTTA
TTATAATAGGGGGAATGTGGTGGTGTCTGCCCCGTTGCTCTCGTGTTTCT
TGGCCTCGGTAGCTTTCAGTCAGGTGGCCCGCCTTTTCCAACGACAGGCC
AGACGATGATGCTGGTGGTGGTGTTGATGGCAACGGATGGAAAGAAGGGA
AGAAGAGAGTAAGGGAGAAACGACAGGCGGGATGCTATGGGACGTTTTCA
TATAATAGATGTAAATGACTGGAGACGTCAAGAGACTCGACGCTTGAGTG
GGGAAGAAGAGTAACATGTAGAAAATGACGACAGGACCCGTTTGAACAAG
TATCAGAACTTGGTTGAAAAA
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protein sequence of jgi.p|Nanoce1779_2|591314

>mRNA_5072-protein ID=mRNA_5072-protein|Name=jgi.p|Nanoce1779_2|591314|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MSSTSSSSSSSSSSSAAAAANEEEAVRAKSMGVQALQRSEYERAVRLLGI
SNRLSPNADTRGLLNSALAGQARMDSGRASAHRAAAATAPPWSDQHSFGR
FMIKVDAAMDWAWEYLPTSAKGAITCYIHPSSRKPLAYISILILGMCLYR
FVLRGPPLAFGRLPGDIYYNRGNVVVSAPLLSCFLASVAFSQVARLFQRQ
ARR*
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mRNA from alignment at scaffold_12:394324..395194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5072 ID=mRNA_5072|Name=jgi.p|Nanoce1779_2|591314|organism=Nannochloropsis oceanica|type=mRNA|length=871bp|location=Sequence derived from alignment at scaffold_12:394324..395194- (Nannochloropsis oceanica)
GGCACCGCCACCTTCATACAACAAACAACGAGGCAACAGTGCCCGCGATG
TCGTCGACATCCTCCTCCTCCTCCTCCTCCTCCTCATCCTCAGCAGCCGC
AGCGGCCAATGAGGAGGAAGCCGTACGGGCTAAATCCATGGGGGTCCAAG
CTTTGCAACGGAGTGAGTATGAGCGCGCTGTCCGGCTACTGGGCATCAGC
AACCGCCTTTCGCCCAACGCTGACACCCGAGGTCTCCTCAATTCTGCTTT
GGCAGGCCAAGCCCGCATGGACAGTGGCCGTGCCTCAGCGCACCGTGCCG
CTGCTGCGACTGCCCCACCATGGTCAGATCAACATTCATTTGGTCGCTTC
ATGATCAAGGTTGACGCGGCGATGGACTGGGCGTGGGAGTATTTGCCCAC
GTCAGCAAAAGGCGCGATCACATGCTACATTCATCCATCGAGTCGCAAAC
CTCTGGCATACATTTCAATCCTTATTCTGGGTATGTGCTTGTACAGGTTT
GTGTTGCGTGGCCCGCCATTGGCATTTGGACGGCTACCGGGTGATATTTA
TTATAATAGGGGGAATGTGGTGGTGTCTGCCCCGTTGCTCTCGTGTTTCT
TGGCCTCGGTAGCTTTCAGTCAGGTGGCCCGCCTTTTCCAACGACAGGCC
AGACGATGATGCTGGTGGTGGTGTTGATGGCAACGGATGGAAAGAAGGGA
AGAAGAGAGTAAGGGAGAAACGACAGGCGGGATGCTATGGGACGTTTTCA
TATAATAGATGTAAATGACTGGAGACGTCAAGAGACTCGACGCTTGAGTG
GGGAAGAAGAGTAACATGTAGAAAATGACGACAGGACCCGTTTGAACAAG
TATCAGAACTTGGTTGAAAAA
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Coding sequence (CDS) from alignment at scaffold_12:394324..395194-

>mRNA_5072 ID=mRNA_5072|Name=jgi.p|Nanoce1779_2|591314|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_12:394324..395194- (Nannochloropsis oceanica)
ATGTCGTCGACATCCTCCTCCTCCTCCTCCTCCTCCTCATCCTCAGCAGC
CGCAGCGGCCAATGAGGAGGAAGCCGTACGGGCTAAATCCATGGGGGTCC
AAGCTTTGCAACGGAGTGAGTATGAGCGCGCTGTCCGGCTACTGGGCATC
AGCAACCGCCTTTCGCCCAACGCTGACACCCGAGGTCTCCTCAATTCTGC
TTTGGCAGGCCAAGCCCGCATGGACAGTGGCCGTGCCTCAGCGCACCGTG
CCGCTGCTGCGACTGCCCCACCATGGTCAGATCAACATTCATTTGGTCGC
TTCATGATCAAGGTTGACGCGGCGATGGACTGGGCGTGGGAGTATTTGCC
CACGTCAGCAAAAGGCGCGATCACATGCTACATTCATCCATCGAGTCGCA
AACCTCTGGCATACATTTCAATCCTTATTCTGGGTATGTGCTTGTACAGG
TTTGTGTTGCGTGGCCCGCCATTGGCATTTGGACGGCTACCGGGTGATAT
TTATTATAATAGGGGGAATGTGGTGGTGTCTGCCCCGTTGCTCTCGTGTT
TCTTGGCCTCGGTAGCTTTCAGTCAGGTGGCCCGCCTTTTCCAACGACAG
GCCAGACGATGA
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Synonyms
Publications