jgi.p|Nanoce1779_2|591311, mRNA_5071 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591311
Unique NamemRNA_5071
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1055
Alignment locationscaffold_12:391346..392602 -

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Properties
Property NameValue
TranscriptId591397
TrackFilteredModels2
ProteinId591311
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:391346..392602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591311gene_5071Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591311mRNA_5071-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5071CDS_5071Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5071 ID=mRNA_5071|Name=jgi.p|Nanoce1779_2|591311|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp
CCCTGCCAAACCCCGCCCTCCTTCCTCCCCTTCCTCCCTCCCTCCCTCCC
CTTCTGCTCCCGAGGCCACATGTGCATTCTCAATTAACCACCCATCATCC
CACAAGGCCCTAAAACTCGCTCTAATCGTCTCGGCAGGCAGACCGTCTAA
AGCCCTCCTCCGTGCCTCCACCATTCCCGCCGACGAATCGCCCGCGGCCA
ACAACGTCTGTTTTACCTTAATCAAAGCAGCAGAAAACAAGGGAGTCTCC
TCCTCCTGCTTCGCGTAATACACCATACGACCGGCCTTGCGATTCAAATG
ATCCGGATCCTCTCTCTCGGCCGCTCGAAGACGGGCCAGGACGCGAGTGG
AGGTCTCCTGGGAACGCAAGAGCATTTCCAACCGACGCAAACACGCCATT
CGTGGCCTCCGCGTCTTCTTCACCACCTCCACCCAGTGCATCCGGAAGCG
ACGACTCCATATCTGTGGCGCATGCGCGACAAGCGGCTTGTTCTCTTTTC
CCTTTTCTTCTGCTCCACCTCTGTCCAGCTCTGCAAGTTCCATTGGTGCT
CCTCTTCCTCCTCCTCCCCCTCGAGCCCCACCAGCAGGAAGCAGCTCCTC
AATCTCCAACAATATCTCGGGGGTGTTTCTCGCCCCCGATCCGTACACAG
CCCTTTGTCTCACGTACGCCTCCATCAGAGCCTCGTCAAACTCTTCGTCC
GTCAACGGAGGTCCTGCAGCAGCAGCATTCGAGGGATCGAAGGAGCACCG
GCCACAAGTGGCGGTAGGGGCAATACGCACGACACTGGCGATGCCGACGA
GGAGGAGGAGGAAACCGCAGGCATGAACCTAGGGATCGGGGGGGGTACAA
TCACCCCCTCTTCCCTGCCCCCCTCTTCCCCCACCTCCTCGTCCTCTTCA
TAGAGCTCGTCGGCCAAGGCTGCTGCTTCCCGTGCCCGATCATCCGCCGT
CTTGGATGTCGCGGTGCCATCTACCCTCGACCCCCCCCCTCCGCGACCTC
TTGACATCCAAAACGTCTTCCTCCCCCTCCTTTCCCCCTCGTTGGGCACC
CCTCC
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protein sequence of jgi.p|Nanoce1779_2|591311

>mRNA_5071-protein ID=mRNA_5071-protein|Name=jgi.p|Nanoce1779_2|591311|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MIRILSLGRSKTGQDASGGLLGTQEHFQPTQTRHSWPPRLLHHLHPVHPE
ATTPYLWRMRDKRLVLFSLFFCSTSVQLCKFHWCSSSSSSPSSPTSRKQL
LNLQQYLGGVSRPRSVHSPLSHVRLHQSLVKLFVRQRRSCSSSIRGIEGA
PATSGGRGNTHDTGDADEEEEETAGMNLGIGGGTITPSSLPPSSPTSSSS
S*
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mRNA from alignment at scaffold_12:391346..392602-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5071 ID=mRNA_5071|Name=jgi.p|Nanoce1779_2|591311|organism=Nannochloropsis oceanica|type=mRNA|length=1257bp|location=Sequence derived from alignment at scaffold_12:391346..392602- (Nannochloropsis oceanica)
CCCTGCCAAACCCCGCCCTCCTTCCTCCCCTTCCTCCCTCCCTCCCTCCC
CTTCTGCTCCCGAGGCCACATGTGCATTCTCAATTAACCACCCATCATCC
CACAAGGCCCTAAAACTCGCTCTAATCGTCTCGGCAGGCAGACCGTCTAA
AGCCCTCCTCCGTGCCTCCACCATTCCCGCCGACGAATCGCCCGCGGCCA
ACAACGTCTGTTTTACCTTAATCAAAGCAGCAGAAAACAAGGGAGTCTCC
TCCTCCTGCTTCGCGTAATACACCATACGACCGGCCTTGCGATTCAAATG
ATCCGGATCCTCTCTCTCGGCCGCTCGAAGACGGGCCAGGACGCGAGTGG
AGGTCTCCTGGGAACGCAAGAGCATTTCCAACCGACGCAAACACGCCATT
CGTGGCCTCCGCGTCTTCTTCACCACCTCCACCCAGTGCATCCGGAAGCG
ACGACTCCATATCTGTGGCGCATGCGCGACAAGCGGCTTGTTCTCTTTTC
CCTTTTCTTCTGCTCCACCTCTGTCCAGCTCTGCAAGTTCCATTGGTGCT
CCTCTTCCTCCTCCTCCCCCTCGAGCCCCACCAGCAGGAAGCAGCTCCTC
AATCTCCAACAATATCTCGGGGGTGTTTCTCGCCCCCGATCCGTACACAG
CCCTTTGTCTCACGTACGCCTCCATCAGAGCCTCGTCAAACTCTTCGTCC
GTCAACGGAGGTCCTGCAGCAGCAGCAGCAGCCGCCGCGTCACCACCGGC
TCCCCCTTCAGACACGACTGAAGCGGTGCGCCGTTTACGCTCGCGCACCA
TTCCGCTGCTGCCCTCCCCCCCTCCCACCTTCCCTTCCTCCGCCCCCCCC
TGCTCCTCTTCAACCTCCCCCTTCCCTCCGTCCTTCCTACTCCGTTTCTT
TGGCAGCAGCTGCTGCGGCTGCTTCAGCATTCGAGGGATCGAAGGAGCAC
CGGCCACAAGTGGCGGTAGGGGCAATACGCACGACACTGGCGATGCCGAC
GAGGAGGAGGAGGAAACCGCAGGCATGAACCTAGGGATCGGGGGGGGTAC
AATCACCCCCTCTTCCCTGCCCCCCTCTTCCCCCACCTCCTCGTCCTCTT
CATAGAGCTCGTCGGCCAAGGCTGCTGCTTCCCGTGCCCGATCATCCGCC
GTCTTGGATGTCGCGGTGCCATCTACCCTCGACCCCCCCCCTCCGCGACC
TCTTGACATCCAAAACGTCTTCCTCCCCCTCCTTTCCCCCTCGTTGGGCA
CCCCTCC
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Coding sequence (CDS) from alignment at scaffold_12:391346..392602-

>mRNA_5071 ID=mRNA_5071|Name=jgi.p|Nanoce1779_2|591311|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_12:391346..392602- (Nannochloropsis oceanica)
CAGCATTCGAGGGATCGAAGGAGCACCGGCCACAAGTGGCGGTAGGGGCA
ATACGCACGACACTGGCGATGCCGACGAGGAGGAGGAGGAAACCGCAGGC
ATGAACCTAGGGATCGGGGGGGGTACAATCACCCCCTCTTCCCTGCCCCC
CTCTTCCCCCACCTCCTCGTCCTCTTCATAGATGATCCGGATCCTCTCTC
TCGGCCGCTCGAAGACGGGCCAGGACGCGAGTGGAGGTCTCCTGGGAACG
CAAGAGCATTTCCAACCGACGCAAACACGCCATTCGTGGCCTCCGCGTCT
TCTTCACCACCTCCACCCAGTGCATCCGGAAGCGACGACTCCATATCTGT
GGCGCATGCGCGACAAGCGGCTTGTTCTCTTTTCCCTTTTCTTCTGCTCC
ACCTCTGTCCAGCTCTGCAAGTTCCATTGGTGCTCCTCTTCCTCCTCCTC
CCCCTCGAGCCCCACCAGCAGGAAGCAGCTCCTCAATCTCCAACAATATC
TCGGGGGTGTTTCTCGCCCCCGATCCGTACACAGCCCTTTGTCTCACGTA
CGCCTCCATCAGAGCCTCGTCAAACTCTTCGTCCGTCAACGGAGGTCCTG
CAGCAGCAGCATTCGAGGGATCGAAGGAGCACCGGCCACAAGTGGCGGTA
GGGGCAATACGCACGACACTGGCGATGCCGACGAGGAGGAGGAGGAAACC
GCAGGCATGAACCTAGGGATCGGGGGGGGTACAATCACCCCCTCTTCCCT
GCCCCCCTCTTCCCCCACCTCCTCGTCCTCTTCATAGATGATCCGGATCC
TCTCTCTCGGCCGCTCGAAGACGGGCCAGGACGCGAGTGGAGGTCTCCTG
GGAACGCAAGAGCATTTCCAACCGACGCAAACACGCCATTCGTGGCCTCC
GCGTCTTCTTCACCACCTCCACCCAGTGCATCCGGAAGCGACGACTCCAT
ATCTGTGGCGCATGCGCGACAAGCGGCTTGTTCTCTTTTCCCTTTTCTTC
TGCTCCACCTCTGTCCAGCTCTGCAAGTTCCATTGGTGCTCCTCTTCCTC
CTCCTCCCCCTCGAGCCCCACCAGCAGGAAGCAGCTCCTCAATCTCCAAC
AATATCTCGGGGGTGTTTCTCGCCCCCGATCCGTACACAGCCCTTTGTCT
CACGTACGCCTCCATCAGAGCCTCGTCAAACTCTTCGTCCGTCAACGGAG
GTCCTGCAGCAG
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Synonyms
Publications