jgi.p|Nanoce1779_2|630763, mRNA_5070 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630763
Unique NamemRNA_5070
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2182
Alignment locationscaffold_12:385073..387752 +

Link to JBrowse

Properties
Property NameValue
TranscriptId630849
TrackFilteredModels2
ProteinId630763
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:385073..387752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630763gene_5070Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630763mRNA_5070-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5070CDS_5070Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5070 ID=mRNA_5070|Name=jgi.p|Nanoce1779_2|630763|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp
TCGCAGCAGTCGCCACCACAACAGTTGGGGGCAGGGGCGCTCGGAGGTCT
CCTGGGAGGAGGAGACGCCGGGGGAGGAGCTGCGGGAGGAGCCATGGGAT
TGGGCGGTATGTTATCCGGTGAATCGGGCTTCACGGCGGATGGGAGGGAG
TATCGAACGATCGTGACTCCTGAGGGGTACCGCATCATATTGGGGAGTGC
CACGGGGGCCGGTGGTGCATTAGGAGGAGGGGCAGGGATGGGAGGGAGGT
CGGGTCAGGAGACGAAGGAGGCCCTGTTGAAGGCTTTGATCAACGATTTG
TCTAAGAATGGGAGACAGGAAATCATTCCCCTGCAGTTGGGGTCCAGGGG
AGGGAGGGGGGGAGGGGGTGGGGGGGAGTTGTTTTCCGGGTCCTTGGACG
GGTCGAGGAGGAGGAGTGGAGGGGAGAGGGGTAGGGAGGGGGGTAGGGAG
GGAGAGGAGGGTTTGACGAGGAAGACAGTAGAAGCCATAAGGCAGTTGTG
TTCAGAGGGAAGGTTAACGGTGTTGCAGAAACAAAAACTTATATTTTCGG
TGATCCGATCGACGAAGCAGGAGGAGGTGAGCCAGGTCGAGATGGCATAT
GAGTTGTTGGTGGAGAATGCATTGGCGGGTGATGAGAGTGCTTTGGAAGA
ATTTGCAGATCAGTGCGTGATGTTGTGTGCTGAGGGTGGATCGGCGCACA
GTTTGACTTATGAGGAGGACTCGGATGACGAAGATTTCGGGGAGGAGTAG
CGAGGGAAGGGAGTACAGGGGTCCAGTTTGACTCTTGAAGAGGACTCGGA
TGACGAAGATTTTGATGAGTAGAGAGGAAAGGGATGACAGAGGTTCTAGT
AGCATTGGGTGTGTAAACAGCGGCGTGTGATATTAACTCGCATTTTGGCC
GGCTTCACTCACGGTCACAGGCACATTTGATGCCTGGAGAAGGAAAGGGA
CGCAAGTGAGGGGATTGAGGGCTTGTACAAAGAGCGCAGCGCACGCGTAA
TGAAGCAAAATTAAGAAGAAGGAAAGGCCCAACCAATGTCTGGAATACCG
CAGCCATTAGGGGTAGCAAAGCGACGCGTAGACGCATCGTACTCGCCTCA
TCTTGCTTATGTTACTTTCTGTCCAGCGGCCCAATGGGCCCTTTGGTGTA
CGTGTTGTTCTTGCGGCTGCTTGCCTCGAACCCAGGATATCATCCAGGCT
CTGGCTATCCCTGGCCTTGTTAAGACGACATTGGCCCACAAGTATGGGCA
CTCACCCTATGAACAGAAGCTTCAACGCGAGGTTGTGGGCATGCATGGTG
TACGTCTGGTGCCTGTAATAGGGCAGGAAGGGGTAACCGGCTGGGGACTC
CCTCGGAGAGCAGAATTCATGGCGTGGCATGATCACTTCCAACTTGTTCC
ATCGTCGCTCCCACTTCTACACCTGAAATCAACACATATAACATATACAC
CCCATCCCCACACATATACAGCCATGGTTGAGCCATCAACAGCTATCGTG
GCCATGGTGAGCCGAGTCCCTCCGCAGGTGCTGTTGACGACGGCTCTGGA
TTATGTCGCACGCCGAGGACGAAACGGCTGCCTAGCCAAGGAAGTCTGGG
ACGTGTGTGAAGTCGAACACGATGCTGGTCTTAGGGCTTACTTGTGGCGC
TCCTTGCGTCGGCAGCCGGAGTACTTGTTTTGCAGGCAAGAAGGCGATGC
CAGCAGCGACGCCGTGACCATCAGTAGGGGCCCAGATGATAGAAAGAGGA
ACCTGAAAACCGAAGAGCAGCAGCACGTCCCATTGACAAACGCGGAGATG
GACGCCCTATCCAACGAGGGGATTGATGAGATCATTATTATCGCCCCGGA
AGACCATCGTCTCCGCGCCCTAGGCGTCGTGCATCCCTCCGATCTCCCAG
AAGAACCCTTTGGAGTCGACGTGCTCGAGATTTTGGCCCAATCCGGGTAT
TCGGGCTTGTCCACCGCTGAGGTTGACGAAGAGATGAAACGGAGGGGGTT
GGGAGGCACTAGGGGAGTGAGTGCTGCTGCCTTTCTGATCGACCGTTTTG
TAGGGCGAGGGCATGTGAGAAAGATGGCGCGGCTTGTGGCGAACCCACCC
GCGACGAGAGGGACGAATAGGGGCGGGGGAGGAGGGAAGGAGGGAGGGAA
TAAGCGGGTGTTGTTCTCGAGGTTGACGCGGT
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protein sequence of jgi.p|Nanoce1779_2|630763

>mRNA_5070-protein ID=mRNA_5070-protein|Name=jgi.p|Nanoce1779_2|630763|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MSGIPQPLGVAKRRVDASYSPHLAYVTFCPAAQWALWCTCCSCGCLPRTQ
DIIQALAIPGLVKTTLAHKYGHSPYEQKLQREVVGMHGVRLVPVIGQEGV
TGWGLPRRAEFMAWHDHFQLVPSSLPLLHLKSTHITYTPHPHTYTAMVEP
STAIVAMVSRVPPQVLLTTALDYVARRGRNGCLAKEVWDVCEVEHDAGLR
AYLWRSLRRQPEYLFCRQEGDASSDAVTISRGPDDRKRNLKTEEQQHVPL
TNAEMDALSNEGIDEIIIIAPEDHRLRALGVVHPSDLPEEPFGVDVLEIL
AQSGYSGLSTAEVDEEMKRRGLGGTRGVSAAAFLIDRFVGRGHVRKMARL
VANPPATRGTNRGGGGGKEGGNKRVLFSRLTR
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mRNA from alignment at scaffold_12:385073..387752+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5070 ID=mRNA_5070|Name=jgi.p|Nanoce1779_2|630763|organism=Nannochloropsis oceanica|type=mRNA|length=2680bp|location=Sequence derived from alignment at scaffold_12:385073..387752+ (Nannochloropsis oceanica)
TCGCAGCAGTCGCCACCACAACAGTTGGGGGCAGGGGCGCTCGGAGGTCT CCTGGGAGGAGGAGACGCCGGGGGAGGAGCTGCGGGAGGAGCCATGGGAT TGGGCGGTATGTTATCCGGTGAATCGGGCTTCACGGCGGATGGGAGGGAG TATCGAACGATCGTGACTCCTGAGGGGTACCGCATCATATTGGGGAGTGC CACGGGGGCCGGTGGTGCATTAGGAGGAGGGGCAGGGATGGGAGGGAGGT CGGGTCAGGAGACGAAGGAGGCCCTGTTGAAGGCTTTGATCAACGATTTG TCTAAGAATGGGAGACAGGAAATCATTCCCCTGCAGTTGGGGTCCAGGGG AGGGAGGGGGGGAGGGGGTGGGGGGGAGTTGTTTTCCGGGTCCTTGGACG GGTCGAGGAGGAGGAGTGGAGGGGAGAGGGGTAGGGAGGGGGGTAGGGAG GGAGAGGAGGGTTTGACGAGGAAGACAGTAGAAGCCATAAGGCAGTTGTG TTCAGAGGGAAGGTTAACGGTGTTGCAGAAACAAAAACTTATATTTTCGG TGATCCGATCGACGAAGCAGGAGGAGGTGAGCCAGGTCGAGATGGCATAT GAGTTGTTGGTGGAGAATGCATTGGCGGGTGATGAGAGTGCTTTGGAAGA ATTTGCAGATCAGTGCGTGATGTTGTGTGCTGAGGGTGGATCGGCGCACA GTTTGACTTATGAGGAGGACTCGGATGACGAAGATTTCGGGGAGGAGTAG CGAGGGAAGGGAGTACAGGGGTCCAGTTTGACTCTTGAAGAGGACTCGGA TGACGAAGATTTTGATGAGTAGAGAGGAAAGGGATGACAGAGGTTCTAGT AGCATTGGGTGTGTAAACAGCGGCGTGTGATATTAACTCGCATTTTGGCC GGCTTCACTCACGGTCACAGGCACATTTGATGCCTGGAGAAGGAAAGGGA CGCAAGTGAGGGGATTGAGGGCTTGTACAAAGAGCGCAGCGCACGCGTAA TGAAGCAAAATTAAGAAGAAGGAAAGGCCCAACCAATGTCTGGAATACCG CAGCCATTAGGGGTAGCAAAGCGACGCGTAGACGCATCGTACTCGCCTCA TCTTGCTTATGTTACTTTCTGTCCAGCGGCCCAATGGGCCCTTTGGTGTA CGTGTTGTTCTTGCGGCTGCTTGCCTCGAACCCAGGATATCATCCAGGCT CTGGCTATCCCTGGCCTTGTTAAGACGACATTGGCCCACAAGTATGGGCA CTCACCCTATGAACAGAAGCTTCAACGCGAGGTTGTGGGCATGCATGGTG TACGTCTGGTGCCTGTAATAGGGCAGGAAGGGGTAACCGGCTGGGGACTC CCTCGGAGAGCAGAATTCATGGCGTGGCATGATCACTTCCAACTTGTTCC ATCGTCGCTCCCACTTCTACACCTGAAATCAACACATATAACATATACAC CCCATCCCCACACATATACAGCCATGGTTGAGCCATCAACAGCTATCGTG GCCATGGTGAGCCGAGTCCCTCCGCAGGTGCTGTTGACGACGGCTCTGGA TTATGTCGCACGCCGAGGTACGTCCTCATTCGACGAGGCTGGTCTGCCCG TCTCCTCCAACTATGCCTGCACACCAAGATGTAATTTGTGAGAGGGCGTA TGACTTACATTCACAAAGTGCCTTCATCATAGAATGGCAACTTTATTTCT TGCGTGTGAGCCTGTCCAGAGCTGCAAAAGAAAGTACGCAGCAGCCGAAA TGCTGCCCCCTATTCCCCAGCCTAGCTGTCCCCTCACGCGCACACTGCGC ACTGCCTCTGATCCTCCGCTTACACATCTGACAGGACGAAACGGCTGCCT AGCCAAGGAAGTCTGGGACGTGTGTGAAGTCGAACACGATGCTGGTCTTA GGGCTTACTTGTGGCGCTCCTTGCGTCGGCAGCCGGAGTACTTGTTTTGC AGGCAAGAAGGCGATGCCAGCAGCGACGCCGTGACCATCAGTAGGGGCCC AGATGATAGAAAGAGGAACCTGAAAACCGAAGAGCAGCAGGTACATGAAC TTATTTCTTCCCGACTGCCACACAGATGGATAGGCTCGTTTTTATAGCAG ATTCATTGCAATGAAAATAAGGTTAGTCTGACAGTCGTTTCTCTCCTTTT CCTGACTTCCGCCGAAACAGCACGTCCCATTGACAAACGCGGAGATGGAC GCCCTATCCAACGAGGGGATTGATGAGATCATTATTATCGGTACGTTTAC CGCTTTTGCTCAATTCCCGTCTTTTACCTCCCTTGACTCATCCCTTCATT CCCTCCCCGTCCCCCCTTCCCTCCTTCCCTCCCTCACACAGCCCCGGAAG ACCATCGTCTCCGCGCCCTAGGCGTCGTGCATCCCTCCGATCTCCCAGAA GAACCCTTTGGAGTCGACGTGCTCGAGATTTTGGCCCAATCCGGGTATTC GGGCTTGTCCACCGCTGAGGTTGACGAAGAGATGAAACGGAGGGGGTTGG GAGGCACTAGGGGAGTGAGTGCTGCTGCCTTTCTGATCGACCGTTTTGTA GGGCGAGGGCATGTGAGAAAGATGGCGCGGCTTGTGGCGAACCCACCCGC GACGAGAGGGACGAATAGGGGCGGGGGAGGAGGGAAGGAGGGAGGGAATA AGCGGGTGTTGTTCTCGAGGTTGACGCGGT
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Coding sequence (CDS) from alignment at scaffold_12:385073..387752+

>mRNA_5070 ID=mRNA_5070|Name=jgi.p|Nanoce1779_2|630763|organism=Nannochloropsis oceanica|type=CDS|length=4584bp|location=Sequence derived from alignment at scaffold_12:385073..387752+ (Nannochloropsis oceanica)
ATGTCTGGAATACCGCAGCCATTAGGGGTAGCAAAGCGACGCGTAGACGC
ATCGTACTCGCCTCATCTTGCTTATGTTACTTTCTGTCCAGCGGCCCAAT
GGGCCCTTTGGTGTACGTGTTGTTCTTGCGGCTGCTTGCCTCGAACCCAG
GATATCATCCAGGCTCTGGCTATCCCTGGCCTTGTTAAGACGACATTGGC
CCACAAGTATGGGCACTCACCCTATGAACAGAAGCTTCAACGCGAGGTTG
TGGGCATGCATGGTGTACGTCTGGTGCCTGTAATAGGGCAGGAAGGGGTA
ACCGGCTGGGGACTCCCTCGGAGAGCAGAATTCATGGCGTGGCATGATCA
CTTCCAACTTGTTCCATCGTCGCTCCCACTTCTACACCTGAAATCAACAC
ATATAACATATACACCCCATCCCCACACATATACAGCCATGGTTGAGCCA
TCAACAGCTATCGTGGCCATGGTGAGCCGAGTCCCTCCGCAGGTGCTGTT
GACGACGGCTCTGGATTATGTCGCACGCCGAGGACGAAACGGCTGCCTAG
CCAAGGAAGTCTGGGACGTGTGTGAAGTCGAACACGATGCTGGTCTTAGG
GCTTACTTGTGGCGCTCCTTGCGTCGGCAGCCGGAGTACTTGTTTTGCAG
GCAAGAAGGCGATGCCAGCAGCGACGCCGTGACCATCAGTAGGGGCCCAG
ATGATAGAAAGAGGAACCTGAAAACCGAAGAGCAGCAGCACGTCCCATTG
ACAAACGCGGAGATGGACGCCCTATCCAACGAGGGGATTGATGAGATCAT
TATTATCGCCCCGGAAGACCATCGTCTCCGCGCCCTAGGCGTCGTGCATC
CCTCCGATCTCCCAGAAGAACCCTTTGGAGTCGACGTGCTCGAGATTTTG
GCCCAATCCGGGTATTCGGGCTTGTCCACCGCTGAGGTTGACGAAGAGAT
GAAACGGAGGGGGTTGGGAGGCACTAGGGGAGTGAGTGCTGCTGCCTTTC
TGATCGACCGTTTTGTAGGGCGAGGGCATGTGAGAAAGATGGCGCGGCTT
GTGGCGAACCCACCCGCGACGAGAGGGACGAATAGGGGCGGGGGAGGAGG
GAAGGAGGGAGGGAATAAGCGGGTGTTGTTCTCGAGGTTGACGCGGATGT
CTGGAATACCGCAGCCATTAGGGGTAGCAAAGCGACGCGTAGACGCATCG
TACTCGCCTCATCTTGCTTATGTTACTTTCTGTCCAGCGGCCCAATGGGC
CCTTTGGTGTACGTGTTGTTCTTGCGGCTGCTTGCCTCGAACCCAGGATA
TCATCCAGGCTCTGGCTATCCCTGGCCTTGTTAAGACGACATTGGCCCAC
AAGTATGGGCACTCACCCTATGAACAGAAGCTTCAACGCGAGGTTGTGGG
CATGCATGGTGTACGTCTGGTGCCTGTAATAGGGCAGGAAGGGGTAACCG
GCTGGGGACTCCCTCGGAGAGCAGAATTCATGGCGTGGCATGATCACTTC
CAACTTGTTCCATCGTCGCTCCCACTTCTACACCTGAAATCAACACATAT
AACATATACACCCCATCCCCACACATATACAGCCATGGTTGAGCCATCAA
CAGCTATCGTGGCCATGGTGAGCCGAGTCCCTCCGCAGGTGCTGTTGACG
ACGGCTCTGGATTATGTCGCACGCCGAGGACGAAACGGCTGCCTAGCCAA
GGAAGTCTGGGACGTGTGTGAAGTCGAACACGATGCTGGTCTTAGGGCTT
ACTTGTGGCGCTCCTTGCGTCGGCAGCCGGAGTACTTGTTTTGCAGGCAA
GAAGGCGATGCCAGCAGCGACGCCGTGACCATCAGTAGGGGCCCAGATGA
TAGAAAGAGGAACCTGAAAACCGAAGAGCAGCAGCACGTCCCATTGACAA
ACGCGGAGATGGACGCCCTATCCAACGAGGGGATTGATGAGATCATTATT
ATCGCCCCGGAAGACCATCGTCTCCGCGCCCTAGGCGTCGTGCATCCCTC
CGATCTCCCAGAAGAACCCTTTGGAGTCGACGTGCTCGAGATTTTGGCCC
AATCCGGGTATTCGGGCTTGTCCACCGCTGAGGTTGACGAAGAGATGAAA
CGGAGGGGGTTGGGAGGCACTAGGGGAGTGAGTGCTGCTGCCTTTCTGAT
CGACCGTTTTGTAGGGCGAGGGCATGTGAGAAAGATGGCGCGGCTTGTGG
CGAACCCACCCGCGACGAGAGGGACGAATAGGGGCGGGGGAGGAGGGAAG
GAGGGAGGGAATAAGCGGGTGTTGTTCTCGAGGTTGACGCGGATGTCTGG
AATACCGCAGCCATTAGGGGTAGCAAAGCGACGCGTAGACGCATCGTACT
CGCCTCATCTTGCTTATGTTACTTTCTGTCCAGCGGCCCAATGGGCCCTT
TGGTGTACGTGTTGTTCTTGCGGCTGCTTGCCTCGAACCCAGGATATCAT
CCAGGCTCTGGCTATCCCTGGCCTTGTTAAGACGACATTGGCCCACAAGT
ATGGGCACTCACCCTATGAACAGAAGCTTCAACGCGAGGTTGTGGGCATG
CATGGTGTACGTCTGGTGCCTGTAATAGGGCAGGAAGGGGTAACCGGCTG
GGGACTCCCTCGGAGAGCAGAATTCATGGCGTGGCATGATCACTTCCAAC
TTGTTCCATCGTCGCTCCCACTTCTACACCTGAAATCAACACATATAACA
TATACACCCCATCCCCACACATATACAGCCATGGTTGAGCCATCAACAGC
TATCGTGGCCATGGTGAGCCGAGTCCCTCCGCAGGTGCTGTTGACGACGG
CTCTGGATTATGTCGCACGCCGAGGACGAAACGGCTGCCTAGCCAAGGAA
GTCTGGGACGTGTGTGAAGTCGAACACGATGCTGGTCTTAGGGCTTACTT
GTGGCGCTCCTTGCGTCGGCAGCCGGAGTACTTGTTTTGCAGGCAAGAAG
GCGATGCCAGCAGCGACGCCGTGACCATCAGTAGGGGCCCAGATGATAGA
AAGAGGAACCTGAAAACCGAAGAGCAGCAGCACGTCCCATTGACAAACGC
GGAGATGGACGCCCTATCCAACGAGGGGATTGATGAGATCATTATTATCG
CCCCGGAAGACCATCGTCTCCGCGCCCTAGGCGTCGTGCATCCCTCCGAT
CTCCCAGAAGAACCCTTTGGAGTCGACGTGCTCGAGATTTTGGCCCAATC
CGGGTATTCGGGCTTGTCCACCGCTGAGGTTGACGAAGAGATGAAACGGA
GGGGGTTGGGAGGCACTAGGGGAGTGAGTGCTGCTGCCTTTCTGATCGAC
CGTTTTGTAGGGCGAGGGCATGTGAGAAAGATGGCGCGGCTTGTGGCGAA
CCCACCCGCGACGAGAGGGACGAATAGGGGCGGGGGAGGAGGGAAGGAGG
GAGGGAATAAGCGGGTGTTGTTCTCGAGGTTGACGCGGATGTCTGGAATA
CCGCAGCCATTAGGGGTAGCAAAGCGACGCGTAGACGCATCGTACTCGCC
TCATCTTGCTTATGTTACTTTCTGTCCAGCGGCCCAATGGGCCCTTTGGT
GTACGTGTTGTTCTTGCGGCTGCTTGCCTCGAACCCAGGATATCATCCAG
GCTCTGGCTATCCCTGGCCTTGTTAAGACGACATTGGCCCACAAGTATGG
GCACTCACCCTATGAACAGAAGCTTCAACGCGAGGTTGTGGGCATGCATG
GTGTACGTCTGGTGCCTGTAATAGGGCAGGAAGGGGTAACCGGCTGGGGA
CTCCCTCGGAGAGCAGAATTCATGGCGTGGCATGATCACTTCCAACTTGT
TCCATCGTCGCTCCCACTTCTACACCTGAAATCAACACATATAACATATA
CACCCCATCCCCACACATATACAGCCATGGTTGAGCCATCAACAGCTATC
GTGGCCATGGTGAGCCGAGTCCCTCCGCAGGTGCTGTTGACGACGGCTCT
GGATTATGTCGCACGCCGAGGACGAAACGGCTGCCTAGCCAAGGAAGTCT
GGGACGTGTGTGAAGTCGAACACGATGCTGGTCTTAGGGCTTACTTGTGG
CGCTCCTTGCGTCGGCAGCCGGAGTACTTGTTTTGCAGGCAAGAAGGCGA
TGCCAGCAGCGACGCCGTGACCATCAGTAGGGGCCCAGATGATAGAAAGA
GGAACCTGAAAACCGAAGAGCAGCAGCACGTCCCATTGACAAACGCGGAG
ATGGACGCCCTATCCAACGAGGGGATTGATGAGATCATTATTATCGCCCC
GGAAGACCATCGTCTCCGCGCCCTAGGCGTCGTGCATCCCTCCGATCTCC
CAGAAGAACCCTTTGGAGTCGACGTGCTCGAGATTTTGGCCCAATCCGGG
TATTCGGGCTTGTCCACCGCTGAGGTTGACGAAGAGATGAAACGGAGGGG
GTTGGGAGGCACTAGGGGAGTGAGTGCTGCTGCCTTTCTGATCGACCGTT
TTGTAGGGCGAGGGCATGTGAGAAAGATGGCGCGGCTTGTGGCGAACCCA
CCCGCGACGAGAGGGACGAATAGGGGCGGGGGAGGAGGGAAGGAGGGAGG
GAATAAGCGGGTGTTGTTCTCGAGGTTGACGCGG
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Synonyms
Publications