jgi.p|Nanoce1779_2|243831, mRNA_507 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|243831
Unique NamemRNA_507
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1304
Alignment locationscaffold_3:1226832..1228534 -

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Properties
Property NameValue
TranscriptId243917
TrackFilteredModels2
ProteinId243831
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1226832..1228534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|243831gene_507Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|243831mRNA_507-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_507CDS_507Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_507 ID=mRNA_507|Name=jgi.p|Nanoce1779_2|243831|organism=Nannochloropsis oceanica|type=mRNA|length=1304bp
ACAGAAAACACTCTTATCAACGTTCACCAAGCTGAGGCGTCCGGGTCCTC
CGTCACAATCCCATCTCAGCATTTCCCCTTTGATTGAACATACTCTCACA
CAAAAACAGAGTCCGCCTCTCAACAGTCACTTCACAAGAAGCCAGACGAC
CCACTAAATCCTACGTCTTTGCGCGATCGACGCACCACTAGGACTCAACA
CGAAAGACAAGAAGCGGCACGCGCCCGACCGACCACGACTTAGACATGGA
GGACCTCAGGGGGACGGTGTACACATTGGTGAAGGAGTGGAGCGATACGC
ATGGCGTGGACCCACACGTGATTTTGATGGGGGCAGGAGCAGCCACCCTC
CTAGGTTTGGGCATCATGGCCTCTCATACCTGCGGCGGGGGCGGACGAAA
GGGGAAGCGCGGCGGGCACAAGACAGGCAAGAAGGCTAGGGGGAAGAAAA
ACGACGGTAACAGCAACAGCAGCAGCAGCAGCAAGCCCCAGGCACCTCCA
CGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACC
GAAAGCAGCACCGGTGGTGGCTTCGGCGGCAGGAGCGAAGAAGAAAAGGG
CAGGAGGAGGTGGGCAGCCGACCCCCGAAGCAATCCATCCCCCCGCTCAT
AAAGCGATGCCTGTCAACGGCACGAGTAGCAGCAATAGCAGCAGCAGTGA
GGATGTGAGTAAGAATAAGAAGAAGAAGAATAAGAAGAAGAAGGCGAGAG
CAGCGGAGGGAGCGACAGGGGGAGGGCCTTCCTCCTCGTCGGCTGCTGCT
GGTGTTGTAGCGGGGGGGTTGGCGGCGGGGGATGAGGCGGGAAAGGCGGC
TAGCTCGACGTTTGTGTACAACAACAATCGAGGAATCGTGGAAGAGTGGG
AGACGTTCAACGACCCGGATGCAGGTTGGAGCGTGGTGGGCAAGAAAAAG
CCGAAGGCCCAGAAAAAGGAAGGAGGGGAGGGTGAGGAGGGCTCGGGTGT
GGAGGCATACGGTGGAGAAAGGGAGGCATGAGTGGAAGGTTGAAGAGGTT
CATCTCTCAATTGTTTCGAGGGGCGAAGGAGGGAGTGAGGGAGGGAAGGA
GGGAGGAGAGAGGAGTATGACTAGATTAGTTTTGGATCAGTGCAGGATTA
CATTAAGTGGGGGGCTTGTTGTGAGATTTATTGTTGTCACATTTCTTAGT
TTAAATTTTGTTTGCCTGTCTCTTTCTAGAGATCCCTGTATCTCTTTTTC
TGTTTTTTTTGTGATGGTGGTGGTAGCACACATACGGACGATACGGAATC
TGCC
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protein sequence of jgi.p|Nanoce1779_2|243831

>mRNA_507-protein ID=mRNA_507-protein|Name=jgi.p|Nanoce1779_2|243831|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MEDLRGTVYTLVKEWSDTHGVDPHVILMGAGAATLLGLGIMASHTCGGGG
RKGKRGGHKTGKKARGKKNDGNSNSSSSSKPQAPPRQQQQQQQQQQQQQQ
PPKAAPVVASAAGAKKKRAGGGGQPTPEAIHPPAHKAMPVNGTSSSNSSS
SEDVSKNKKKKNKKKKARAAEGATGGGPSSSSAAAGVVAGGLAAGDEAGK
AASSTFVYNNNRGIVEEWETFNDPDAGWSVVGKKKPKAQKKEGGEGEEGS
GVEAYGGEREA*
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mRNA from alignment at scaffold_3:1226832..1228534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_507 ID=mRNA_507|Name=jgi.p|Nanoce1779_2|243831|organism=Nannochloropsis oceanica|type=mRNA|length=1703bp|location=Sequence derived from alignment at scaffold_3:1226832..1228534- (Nannochloropsis oceanica)
ACAGAAAACACTCTTATCAACGTTCACCAAGCTGAGGCGTCCGGGTCCTC
CGTCACAATCCCATCTCAGCATTTCCCCTTTGATTGAACATACTCTCACA
CAAAAACAGAGTCCGCCTCTCAACAGTCACTTCACAAGAAGCCAGACGAC
CCACTAAATCCTACGTCTTTGCGCGATCGACGCACCACTAGGACTCAACA
CGAAAGACAAGAAGCGGCACGCGCCCGACCGACCACGACTTAGACATGGA
GGACCTCAGGGGGACGGTGTACACATTGGTGAAGGAGTGGAGCGATACGC
ATGGCGTGGACCCACACGTGATTTTGATGGGGGCAGGAGCAGCCACCCTC
CTAGGTAAGTGTTGAAGGCAGGAGGAGTGGGAGGACACGGGCAGTGGGCA
GTGAGCGCGGAGGGTAGGAATCTCCGAGCACCGTCGATTTTACCTATTTT
CTTTTTTTTGCAATCGCCCTTTCTTTCCTCTGCATATCCATGCTCCAGGT
TTGGGCATCATGGCCTCTCATACCTGCGGCGGGGGCGGACGAAAGGGGAA
GCGCGGCGGGCACAAGACAGGCAAGAAGGCTAGGGGGAAGAAAAACGACG
GTAACAGCAACAGCAGCAGCAGCAGCAAGCCCCAGGCACCTCCACGGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACCGAAAGC
AGCACCGGTGGTGGCTTCGGCGGCAGGAGCGAAGAAGAAAAGGGCAGGAG
GAGGTGGGCAGCCGACCCCCGAAGCAATCCATCCCCCCGCTCATAAAGCG
ATGCCTGTCAACGGCACGAGTAGCAGCAATAGCAGCAGCAGTGAGGATGT
GAGTAAGAATAAGAAGAAGAAGAATAAGAAGAAGAAGGCGAGAGCAGCGG
AGGGAGCGACAGGGGGAGGGCCTTCCTCCTCGTCGGCTGCTGCTGGTGTT
GTAGCGGGGGGGTTGGCGGCGGGGGATGAGGCGGGAAAGGCGGCTAGCTC
GACGTTTGTGTACAACAACAATCGAGGAATCGTGGAAGAGGTGCGTCAGA
AAGAAGAGAGGGATGAAGGGTACGAGAGGGAAGTAAGTTTAGTCGTCTTG
TCATCTATCCCTAAAGGAACGCACGTGTACATCCAACTATTGTCACGTCT
TCACCCATTACACGCACTCACACATGTGCATACAAACACACACACATGTT
GAACATTAATATGTTCTCCACTTTCACATTAAGACACACCACCCTCATAC
AATATATTCCTTATCAACACGCACCACCCTCGTACATATATACAGTGGGA
GACGTTCAACGACCCGGATGCAGGTTGGAGCGTGGTGGGCAAGAAAAAGC
CGAAGGCCCAGAAAAAGGAAGGAGGGGAGGGTGAGGAGGGCTCGGGTGTG
GAGGCATACGGTGGAGAAAGGGAGGCATGAGTGGAAGGTTGAAGAGGTTC
ATCTCTCAATTGTTTCGAGGGGCGAAGGAGGGAGTGAGGGAGGGAAGGAG
GGAGGAGAGAGGAGTATGACTAGATTAGTTTTGGATCAGTGCAGGATTAC
ATTAAGTGGGGGGCTTGTTGTGAGATTTATTGTTGTCACATTTCTTAGTT
TAAATTTTGTTTGCCTGTCTCTTTCTAGAGATCCCTGTATCTCTTTTTCT
GTTTTTTTTGTGATGGTGGTGGTAGCACACATACGGACGATACGGAATCT
GCC
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Coding sequence (CDS) from alignment at scaffold_3:1226832..1228534-

>mRNA_507 ID=mRNA_507|Name=jgi.p|Nanoce1779_2|243831|organism=Nannochloropsis oceanica|type=CDS|length=2358bp|location=Sequence derived from alignment at scaffold_3:1226832..1228534- (Nannochloropsis oceanica)
TGGGAGACGTTCAACGACCCGGATGCAGGTTGGAGCGTGGTGGGCAAGAA
AAAGCCGAAGGCCCAGAAAAAGGAAGGAGGGGAGGGTGAGGAGGGCTCGG
GTGTGGAGGCATACGGTGGAGAAAGGGAGGCATGAGTTTGGGCATCATGG
CCTCTCATACCTGCGGCGGGGGCGGACGAAAGGGGAAGCGCGGCGGGCAC
AAGACAGGCAAGAAGGCTAGGGGGAAGAAAAACGACGGTAACAGCAACAG
CAGCAGCAGCAGCAAGCCCCAGGCACCTCCACGGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCCACCGAAAGCAGCACCGGTGGTG
GCTTCGGCGGCAGGAGCGAAGAAGAAAAGGGCAGGAGGAGGTGGGCAGCC
GACCCCCGAAGCAATCCATCCCCCCGCTCATAAAGCGATGCCTGTCAACG
GCACGAGTAGCAGCAATAGCAGCAGCAGTGAGGATGTGAGTAAGAATAAG
AAGAAGAAGAATAAGAAGAAGAAGGCGAGAGCAGCGGAGGGAGCGACAGG
GGGAGGGCCTTCCTCCTCGTCGGCTGCTGCTGGTGTTGTAGCGGGGGGGT
TGGCGGCGGGGGATGAGGCGGGAAAGGCGGCTAGCTCGACGTTTGTGTAC
AACAACAATCGAGGAATCGTGGAAGAGATGGAGGACCTCAGGGGGACGGT
GTACACATTGGTGAAGGAGTGGAGCGATACGCATGGCGTGGACCCACACG
TGATTTTGATGGGGGCAGGAGCAGCCACCCTCCTAGTGGGAGACGTTCAA
CGACCCGGATGCAGGTTGGAGCGTGGTGGGCAAGAAAAAGCCGAAGGCCC
AGAAAAAGGAAGGAGGGGAGGGTGAGGAGGGCTCGGGTGTGGAGGCATAC
GGTGGAGAAAGGGAGGCATGAGTTTGGGCATCATGGCCTCTCATACCTGC
GGCGGGGGCGGACGAAAGGGGAAGCGCGGCGGGCACAAGACAGGCAAGAA
GGCTAGGGGGAAGAAAAACGACGGTAACAGCAACAGCAGCAGCAGCAGCA
AGCCCCAGGCACCTCCACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCCACCGAAAGCAGCACCGGTGGTGGCTTCGGCGGCAGG
AGCGAAGAAGAAAAGGGCAGGAGGAGGTGGGCAGCCGACCCCCGAAGCAA
TCCATCCCCCCGCTCATAAAGCGATGCCTGTCAACGGCACGAGTAGCAGC
AATAGCAGCAGCAGTGAGGATGTGAGTAAGAATAAGAAGAAGAAGAATAA
GAAGAAGAAGGCGAGAGCAGCGGAGGGAGCGACAGGGGGAGGGCCTTCCT
CCTCGTCGGCTGCTGCTGGTGTTGTAGCGGGGGGGTTGGCGGCGGGGGAT
GAGGCGGGAAAGGCGGCTAGCTCGACGTTTGTGTACAACAACAATCGAGG
AATCGTGGAAGAGATGGAGGACCTCAGGGGGACGGTGTACACATTGGTGA
AGGAGTGGAGCGATACGCATGGCGTGGACCCACACGTGATTTTGATGGGG
GCAGGAGCAGCCACCCTCCTAGTGGGAGACGTTCAACGACCCGGATGCAG
GTTGGAGCGTGGTGGGCAAGAAAAAGCCGAAGGCCCAGAAAAAGGAAGGA
GGGGAGGGTGAGGAGGGCTCGGGTGTGGAGGCATACGGTGGAGAAAGGGA
GGCATGAGTTTGGGCATCATGGCCTCTCATACCTGCGGCGGGGGCGGACG
AAAGGGGAAGCGCGGCGGGCACAAGACAGGCAAGAAGGCTAGGGGGAAGA
AAAACGACGGTAACAGCAACAGCAGCAGCAGCAGCAAGCCCCAGGCACCT
CCACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCC
ACCGAAAGCAGCACCGGTGGTGGCTTCGGCGGCAGGAGCGAAGAAGAAAA
GGGCAGGAGGAGGTGGGCAGCCGACCCCCGAAGCAATCCATCCCCCCGCT
CATAAAGCGATGCCTGTCAACGGCACGAGTAGCAGCAATAGCAGCAGCAG
TGAGGATGTGAGTAAGAATAAGAAGAAGAAGAATAAGAAGAAGAAGGCGA
GAGCAGCGGAGGGAGCGACAGGGGGAGGGCCTTCCTCCTCGTCGGCTGCT
GCTGGTGTTGTAGCGGGGGGGTTGGCGGCGGGGGATGAGGCGGGAAAGGC
GGCTAGCTCGACGTTTGTGTACAACAACAATCGAGGAATCGTGGAAGAGA
TGGAGGACCTCAGGGGGACGGTGTACACATTGGTGAAGGAGTGGAGCGAT
ACGCATGGCGTGGACCCACACGTGATTTTGATGGGGGCAGGAGCAGCCAC
CCTCCTAG
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Synonyms
Publications