jgi.p|Nanoce1779_2|591299, mRNA_5068 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591299
Unique NamemRNA_5068
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length808
Alignment locationscaffold_12:382243..383433 -

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Properties
Property NameValue
TranscriptId591385
TrackFilteredModels2
ProteinId591299
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:382243..383433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591299gene_5068Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591299mRNA_5068-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5068CDS_5068Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5068 ID=mRNA_5068|Name=jgi.p|Nanoce1779_2|591299|organism=Nannochloropsis oceanica|type=mRNA|length=808bp
AACAATAAAATCGCAGCACCACCGCGTCCACCCCTCATCTACGTGCCCTG
AGAATAAGAACTCACTCGGCCTCCTTGCGGCTTCTGGAAAGGGAACTGAA
CTGAGGTGGTTCCATCGGGGCGACCCTCAATCATCGAAAACACCATCGCC
GATTCCTATATCACAGGAGCGCAGCGCCGAACGACGAAGAAGCAGAGACA
ATTTCTCACGACTTCACCTGCACAACATTCATCCACCACGTAGGCAAGTC
CATCAGTCTTCATTCGATACCATGTCATTCGAGATGGATCTGGCACTGCC
CGTGCTCAAGGAGCCTGTTGACCAGATGCGTGAGGGTATCAAGGCCGGCG
GCTTTCAAAGCGAGGCGACCGCGCCGCATCCGGTGCAAGCTTTCCAGGCT
ACGCGCAAAGAGCGGGAATTTAGCGCTCGCCTTGACACGATCGCTCGCCT
GTATGGCGTGGCGGCTGCGATGCGCATGAAGACCGAAGCGGACATTTTGA
GCCAGATTTGCCGTGCCCCTGGCTTGCCTTCGTCGTTTGTGGGGTTGGAA
ACTGTGTTGGGTACTGACGAGACGGTTGAATTCGAGGATGTATTGAATGA
CCCGCAAGAGCGACCGGATCTGCCGATGGTGTCGGTGCATGAGAAGATGG
AGGCCAGGTTGGGGTTGTAGGGCAGGAGGGAGGAAGGGAGGAAGATCAAG
GGGGAGTTGATCGCGGTGGGTTGGGGCGATCGAGGAAGCGGGAAAGTGGG
CAAAAATGGGAAGGTGGAAGGAGTAGGGGAAGAAAAGGGAAAATGTTGTC
ATCCAAGC
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protein sequence of jgi.p|Nanoce1779_2|591299

>mRNA_5068-protein ID=mRNA_5068-protein|Name=jgi.p|Nanoce1779_2|591299|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MSFEMDLALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREF
SARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDE
TVEFEDVLNDPQERPDLPMVSVHEKMEARLGL*
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mRNA from alignment at scaffold_12:382243..383433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5068 ID=mRNA_5068|Name=jgi.p|Nanoce1779_2|591299|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp|location=Sequence derived from alignment at scaffold_12:382243..383433- (Nannochloropsis oceanica)
AACAATAAAATCGCAGCACCACCGCGTCCACCCCTCATCTACGTGCCCTG
AGAATAAGAACTCACTCGGCCTCCTTGCGGCTTCTGGAAAGGGAACTGAA
CTGAGGTGGTTCCATCGGGGCGACCCTCAATCATCGAAAACACCATCGCC
GATTCCTATATCACAGGAGCGCAGCGCCGAACGACGAAGAAGCAGAGACA
ATTTCTCACGACTTCACCTGCACAACATTCATCCACCACGTAGGCAAGTC
CATCAGTCTTCATTCGATACCATGTCATTCGAGATGGATCTGGCACTGCC
CGTGCTCAAGGAGCCTGTTGACCAGATGCGTGAGGGTATCAAGGCCGGCG
GCTTTCAAAGCGAGGCGACCGCGCCGCATCCGGTGCAAGCTTTCCAGGCT
ACGGTACGTTTGTATGCATCGAGAGGAGGAGGGACATACGCAGGAAGGGG
ATAGGCAAGCTCGTCTTTGGCGCCGTGGTGGTGATTTGCTCTCGGGGTGG
GAGTCCATGATGCTTCTGTATTGGTGCTGTACTCATTCGGCGGGCCATGT
GCCTGCTGCGAGCCCAGCCTTCTTCACTTTACATCGCCCGCCCCGATGTT
GAGCAAATATGCGCACCTATACAAGCGTTGCTCTACAGGATAGCCTTCCA
ATTATATTTGTGCTCGGTCCCTCTGTTCTTCTCCCGTTACCGCAACCCTT
CCCCTTCATCGTCTGTGCTTCCCTCCCTCTTTTTCCTCTTACCGCATCCT
CACCCACCATGCCATCCCCTTTCCTCTAACTAACAGCGCAAAGAGCGGGA
ATTTAGCGCTCGCCTTGACACGATCGCTCGCCTGTATGGCGTGGCGGCTG
CGATGCGCATGAAGACCGAAGCGGACATTTTGAGCCAGATTTGCCGTGCC
CCTGGCTTGCCTTCGTCGTTTGTGGGGTTGGAAACTGTGTTGGGTACTGA
CGAGACGGTTGAATTCGAGGATGTATTGAATGACCCGCAAGAGCGACCGG
ATCTGCCGATGGTGTCGGTGCATGAGAAGATGGAGGCCAGGTTGGGGTTG
TAGGGCAGGAGGGAGGAAGGGAGGAAGATCAAGGGGGAGTTGATCGCGGT
GGGTTGGGGCGATCGAGGAAGCGGGAAAGTGGGCAAAAATGGGAAGGTGG
AAGGAGTAGGGGAAGAAAAGGGAAAATGTTGTCATCCAAGC
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Coding sequence (CDS) from alignment at scaffold_12:382243..383433-

>mRNA_5068 ID=mRNA_5068|Name=jgi.p|Nanoce1779_2|591299|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_12:382243..383433- (Nannochloropsis oceanica)
CGCAAAGAGCGGGAATTTAGCGCTCGCCTTGACACGATCGCTCGCCTGTA
TGGCGTGGCGGCTGCGATGCGCATGAAGACCGAAGCGGACATTTTGAGCC
AGATTTGCCGTGCCCCTGGCTTGCCTTCGTCGTTTGTGGGGTTGGAAACT
GTGTTGGGTACTGACGAGACGGTTGAATTCGAGGATGTATTGAATGACCC
GCAAGAGCGACCGGATCTGCCGATGGTGTCGGTGCATGAGAAGATGGAGG
CCAGGTTGGGGTTGTAGATGTCATTCGAGATGGATCTGGCACTGCCCGTG
CTCAAGGAGCCTGTTGACCAGATGCGTGAGGGTATCAAGGCCGGCGGCTT
TCAAAGCGAGGCGACCGCGCCGCATCCGGTGCAAGCTTTCCAGGCTACGC
GCAAAGAGCGGGAATTTAGCGCTCGCCTTGACACGATCGCTCGCCTGTAT
GGCGTGGCGGCTGCGATGCGCATGAAGACCGAAGCGGACATTTTGAGCCA
GATTTGCCGTGCCCCTGGCTTGCCTTCGTCGTTTGTGGGGTTGGAAACTG
TGTTGGGTACTGACGAGACGGTTGAATTCGAGGATGTATTGAATGACCCG
CAAGAGCGACCGGATCTGCCGATGGTGTCGGTGCATGAGAAGATGGAGGC
CAGGTTGGGGTTGTAGATGTCATTCGAGATGGATCTGGCACTGCCCGTGC
TCAAGGAGCCTGTTGACCAGATGCGTGAGGGTATCAAGGCCGGCGGCTTT
CAAAGCGAGGCGACCGCGCCGCATCCGGTGCAAGCTTTCCAGGCTACG
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Synonyms
Publications