jgi.p|Nanoce1779_2|591288, mRNA_5065 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591288
Unique Name	mRNA_5065
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1557
Alignment location	scaffold_12:367826..369664 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591374
Track	FilteredModels2
ProteinId	591288

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:367826..369664 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591288	gene_5065	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591288	mRNA_5065-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5065	CDS_5065	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:367826..369664+
coding sequence from alignment at scaffold_12:367826..369664+

mRNA sequence

>mRNA_5065 ID=mRNA_5065|Name=jgi.p|Nanoce1779_2|591288|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp
AGCCCGCACAGTATCATCATGTCCTCCTCCTCCGAGTCCGATTCCAATTC
GGCCACAGCTCCCTCTCCTCCTGTGACGGCTCCCGCTCCGGTATCCATCT
CCTCGCATGGCCTTGAGGCCTATCACACGCACCTCGTGGAGGCCGCCAAG
CTGGCTACACAATTGACACAGGAGCAAAAGGACGCCCTCGAGACAATCGC
GAATCAAATGGCCCGTCCCGGGCGGGGTCTGCTGGCCGCCGACGAAAGCG
TGCCCACTCTGGGCAAGCGCCTAGTGGCCGCCGGGTTGGTCAATGATGAA
GAGACGAGACGGGCTTACCGTGAGGTGTTGTTTGGTCACCCTGAAATGGG
GGAGTACCTGAGTGGTGCCATCCTCTTCTCCGAGACACTTGGACAGAAAG
CAATCAAGGACCCAGAAGGCCGTCTCTTTCCCGCATTGTTGCAAAGCAAG
GGCGTCCTGCCCGGCGTTAAGGTTGACACCGGCTTGGAACCCTTGGGGTA
CTCTCCGCGGGAGACGCATACCACAGGCATGGACGACCTGATGAAACGTT
GCCAAGGGTTTTATGCGCAAGGCGCGCGCTTTGCGAAATGGCGGGCTGTC
ATCCGAATCGATGAGACGGCACAGTTGCCCACCCGCGCATGCATGCAGAT
CAACAGTGCAGAGCTCGCGAGGTACGCGGCAGTGTGCCAGGCGTGTGGGC
TTGTGCCCATTGTGGAGCCGGAAATTTTGATTGAGGGAAGCCATACTGCG
GAGACGTTTGCGAGGGTGACCGAGGCGGCGTTGAGCGAGGTTTATTACAC
CATGGCGCAAGCAAAGGTGTTTTTGGAAGGCACGTTGCTCAAGCCCCAAA
TGGTCATGCCAGGAGTCGATAGCACCCCAGAAGAGCGGCCTACCCCAGAA
GAGGCAGCGCGGCGAACGCTGGAAGTCCTGCGGAGACGCGTCCCACCTGC
TGTCCCCGGCATTATGTTTTTGTCAGGGGGACAAACTGAAGAACAAGCCA
CGCAAAATCTGACCCTAATCAACCAGCTCGCCAAGCGAGCTCCCTCCTCC
TTCCGTCCCTCCCTCACGACTTGTCCCTGGATCTTAAGCTTCTCCTTTGG
TCGGTCGTTGCAAGCCTCAGTGCTGGCTGCGTGGATGGGAAAGGAAGAAA
ACTACACCGCAGCAGTGGCAATAGCAGGCGAGTTGGCAAAGGCAAATGCT
CAAGCACAACTAGGGGAGTATGTCGGTCCACATCCTTCTCTGCTGAAAGA
CAAGAGCCTCCATGAAACAAACAGGGGTTTCTACGGCCAGGGCGTCGCAG
GAGTAGCTGGGGCAGCAGCGTCAGGAGAGAAGGAGAAGACTGCTGAGGCT
CCTACAGAGGGGTTGGCCGAGAAGCCGGGCGAGGAAGAGGTAGGGAAGGC
GGACATACAAGCGGCAGTTTCTGCTGATGCGACAGAACGAGAAAGCAGCA
GGAGCACGTTGTAGGCAAATGCAAGGAAAAGACAGAAGATACGTGAATGC
ACAGAGCGAAGCAGGTAAACTGATAGCTATGGAAAATAATTATGCATAAG
TGTGATG

protein sequence of jgi.p|Nanoce1779_2|591288

>mRNA_5065-protein ID=mRNA_5065-protein|Name=jgi.p|Nanoce1779_2|591288|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MSSSSESDSNSATAPSPPVTAPAPVSISSHGLEAYHTHLVEAAKLATQLT
QEQKDALETIANQMARPGRGLLAADESVPTLGKRLVAAGLVNDEETRRAY
REVLFGHPEMGEYLSGAILFSETLGQKAIKDPEGRLFPALLQSKGVLPGV
KVDTGLEPLGYSPRETHTTGMDDLMKRCQGFYAQGARFAKWRAVIRIDET
AQLPTRACMQINSAELARYAAVCQACGLVPIVEPEILIEGSHTAETFARV
TEAALSEVYYTMAQAKVFLEGTLLKPQMVMPGVDSTPEERPTPEEAARRT
LEVLRRRVPPAVPGIMFLSGGQTEEQATQNLTLINQLAKRAPSSFRPSLT
TCPWILSFSFGRSLQASVLAAWMGKEENYTAAVAIAGELAKANAQAQLGE
YVGPHPSLLKDKSLHETNRGFYGQGVAGVAGAAASGEKEKTAEAPTEGLA
EKPGEEEVGKADIQAAVSADATERESSRSTL*

mRNA from alignment at scaffold_12:367826..369664+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5065 ID=mRNA_5065|Name=jgi.p|Nanoce1779_2|591288|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp|location=Sequence derived from alignment at scaffold_12:367826..369664+ (Nannochloropsis oceanica)
AGCCCGCACAGTATCATCATGTCCTCCTCCTCCGAGTCCGATTCCAATTC
GGCCACAGCTCCCTCTCCTCCTGTGACGGCTCCCGCTCCGGTATCCATCT
CCTCGCATGGCCTTGAGGCCTATCACACGCACCTCGTGGAGGCCGCCAAG
CTGGCTACACAATTGACACAGGAGCAAAAGGACGCCCTCGAGACAATCGC
GAATCAAATGGCCCGTCCCGGGCGGGGTCTGCTGGCCGCCGACGAAAGCG
TGCCCACTCTGGGCAAGCGCCTAGTGGCCGCCGGGTTGGTCAATGATGAA
GAGACGAGACGGGCTTACCGTGAGGTGTTGTTTGGTCACCCTGAAATGGG
GGAGTACCTGAGTGGTGCCATCCTCTTCTCCGAGACACTTGGACAGAAAG
CAATCAAGGACCCAGAAGGCCGTCTCTTTCCCGCATTGTTGCAAAGCAAG
GGCGTCCTGCCCGGCGTTAAGGTTGACACCGGCTTGGAACCCTTGGGGTA
CTCTCCGCGGGAGACGCATACCACAGGCATGGACGACCTGATGAAACGTT
GCCAAGGGTTTTATGCGCAAGGCGCGCGCTTTGCGAAATGGCGGGCTGTC
ATCCGAATCGATGAGACGGCACAGTTGCCCACCCGCGCATGCATGCAGAT
CAACAGTGCAGAGCTCGCGAGGTACGCGGCAGTGTGCCAGGCGTGTGGGC
TTGTGCCCATTGTGGAGCCGGAAATTTTGATTGAGGGAAGCCATACTGCG
GAGACGTTTGCGAGGGTGACCGAGGCGGCGTTGAGCGAGGTTTATTACAC
CATGGCGCAAGCAAAGGTGTTTTTGGAAGGGTATGTGAGGGAGGGGAGGG
GGATAGGGATGGATAGGACGGAGGGGAGAACTCCCTCTTATCTTTCCTAT
CATCGCTTACCCTCCCCTCCTATTCTTGCCATCAACAGCACGTTGCTCAA
GCCCCAAATGGTCATGCCAGGAGTCGATAGCACCCCAGAAGAGCGGCCTA
CCCCAGAAGAGGCAGCGCGGCGAACGCTGGAAGTCCTGCGGAGACGCGTC
CCACCTGCTGTCCCCGGCATTATGTTTTTGTCAGGTGGGTGGGTGTGCAG
GCACCATCTGCTCCACTTTGTTTTTGGAGCCTCTATCGCCTCTTTGCTCT
CATATCGTGTCTTTTCCCTGGCTTTCCCTGTCATTATAAATACTGCTTGA
TCAACGCTCACACTGCACTTTCTTGCTTCCTCTTCCGCCCAACTATTCTC
TTCACCAGGGGGACAAACTGAAGAACAAGCCACGCAAAATCTGACCCTAA
TCAACCAGCTCGCCAAGCGAGCTCCCTCCTCCTTCCGTCCCTCCCTCACG
ACTTGTCCCTGGATCTTAAGCTTCTCCTTTGGTCGGTCGTTGCAAGCCTC
AGTGCTGGCTGCGTGGATGGGAAAGGAAGAAAACTACACCGCAGCAGTGG
CAATAGCAGGCGAGTTGGCAAAGGCAAATGCTCAAGCACAACTAGGGGAG
TATGTCGGTCCACATCCTTCTCTGCTGAAAGACAAGAGCCTCCATGAAAC
AAACAGGGGTTTCTACGGCCAGGGCGTCGCAGGAGTAGCTGGGGCAGCAG
CGTCAGGAGAGAAGGAGAAGACTGCTGAGGCTCCTACAGAGGGGTTGGCC
GAGAAGCCGGGCGAGGAAGAGGTAGGGAAGGCGGACATACAAGCGGCAGT
TTCTGCTGATGCGACAGAACGAGAAAGCAGCAGGAGCACGTTGTAGGCAA
ATGCAAGGAAAAGACAGAAGATACGTGAATGCACAGAGCGAAGCAGGTAA
ACTGATAGCTATGGAAAATAATTATGCATAAGTGTGATG

Coding sequence (CDS) from alignment at scaffold_12:367826..369664+

>mRNA_5065 ID=mRNA_5065|Name=jgi.p|Nanoce1779_2|591288|organism=Nannochloropsis oceanica|type=CDS|length=4338bp|location=Sequence derived from alignment at scaffold_12:367826..369664+ (Nannochloropsis oceanica)
ATGTCCTCCTCCTCCGAGTCCGATTCCAATTCGGCCACAGCTCCCTCTCC
TCCTGTGACGGCTCCCGCTCCGGTATCCATCTCCTCGCATGGCCTTGAGG
CCTATCACACGCACCTCGTGGAGGCCGCCAAGCTGGCTACACAATTGACA
CAGGAGCAAAAGGACGCCCTCGAGACAATCGCGAATCAAATGGCCCGTCC
CGGGCGGGGTCTGCTGGCCGCCGACGAAAGCGTGCCCACTCTGGGCAAGC
GCCTAGTGGCCGCCGGGTTGGTCAATGATGAAGAGACGAGACGGGCTTAC
CGTGAGGTGTTGTTTGGTCACCCTGAAATGGGGGAGTACCTGAGTGGTGC
CATCCTCTTCTCCGAGACACTTGGACAGAAAGCAATCAAGGACCCAGAAG
GCCGTCTCTTTCCCGCATTGTTGCAAAGCAAGGGCGTCCTGCCCGGCGTT
AAGGTTGACACCGGCTTGGAACCCTTGGGGTACTCTCCGCGGGAGACGCA
TACCACAGGCATGGACGACCTGATGAAACGTTGCCAAGGGTTTTATGCGC
AAGGCGCGCGCTTTGCGAAATGGCGGGCTGTCATCCGAATCGATGAGACG
GCACAGTTGCCCACCCGCGCATGCATGCAGATCAACAGTGCAGAGCTCGC
GAGGTACGCGGCAGTGTGCCAGGCGTGTGGGCTTGTGCCCATTGTGGAGC
CGGAAATTTTGATTGAGGGAAGCCATACTGCGGAGACGTTTGCGAGGGTG
ACCGAGGCGGCGTTGAGCGAGGTTTATTACACCATGGCGCAAGCAAAGGT
GTTTTTGGAAGGCACGTTGCTCAAGCCCCAAATGGTCATGCCAGGAGTCG
ATAGCACCCCAGAAGAGCGGCCTACCCCAGAAGAGGCAGCGCGGCGAACG
CTGGAAGTCCTGCGGAGACGCGTCCCACCTGCTGTCCCCGGCATTATGTT
TTTGTCAGGGGGACAAACTGAAGAACAAGCCACGCAAAATCTGACCCTAA
TCAACCAGCTCGCCAAGCGAGCTCCCTCCTCCTTCCGTCCCTCCCTCACG
ACTTGTCCCTGGATCTTAAGCTTCTCCTTTGGTCGGTCGTTGCAAGCCTC
AGTGCTGGCTGCGTGGATGGGAAAGGAAGAAAACTACACCGCAGCAGTGG
CAATAGCAGGCGAGTTGGCAAAGGCAAATGCTCAAGCACAACTAGGGGAG
TATGTCGGTCCACATCCTTCTCTGCTGAAAGACAAGAGCCTCCATGAAAC
AAACAGGGGTTTCTACGGCCAGGGCGTCGCAGGAGTAGCTGGGGCAGCAG
CGTCAGGAGAGAAGGAGAAGACTGCTGAGGCTCCTACAGAGGGGTTGGCC
GAGAAGCCGGGCGAGGAAGAGGTAGGGAAGGCGGACATACAAGCGGCAGT
TTCTGCTGATGCGACAGAACGAGAAAGCAGCAGGAGCACGTTGTAGATGT
CCTCCTCCTCCGAGTCCGATTCCAATTCGGCCACAGCTCCCTCTCCTCCT
GTGACGGCTCCCGCTCCGGTATCCATCTCCTCGCATGGCCTTGAGGCCTA
TCACACGCACCTCGTGGAGGCCGCCAAGCTGGCTACACAATTGACACAGG
AGCAAAAGGACGCCCTCGAGACAATCGCGAATCAAATGGCCCGTCCCGGG
CGGGGTCTGCTGGCCGCCGACGAAAGCGTGCCCACTCTGGGCAAGCGCCT
AGTGGCCGCCGGGTTGGTCAATGATGAAGAGACGAGACGGGCTTACCGTG
AGGTGTTGTTTGGTCACCCTGAAATGGGGGAGTACCTGAGTGGTGCCATC
CTCTTCTCCGAGACACTTGGACAGAAAGCAATCAAGGACCCAGAAGGCCG
TCTCTTTCCCGCATTGTTGCAAAGCAAGGGCGTCCTGCCCGGCGTTAAGG
TTGACACCGGCTTGGAACCCTTGGGGTACTCTCCGCGGGAGACGCATACC
ACAGGCATGGACGACCTGATGAAACGTTGCCAAGGGTTTTATGCGCAAGG
CGCGCGCTTTGCGAAATGGCGGGCTGTCATCCGAATCGATGAGACGGCAC
AGTTGCCCACCCGCGCATGCATGCAGATCAACAGTGCAGAGCTCGCGAGG
TACGCGGCAGTGTGCCAGGCGTGTGGGCTTGTGCCCATTGTGGAGCCGGA
AATTTTGATTGAGGGAAGCCATACTGCGGAGACGTTTGCGAGGGTGACCG
AGGCGGCGTTGAGCGAGGTTTATTACACCATGGCGCAAGCAAAGGTGTTT
TTGGAAGGCACGTTGCTCAAGCCCCAAATGGTCATGCCAGGAGTCGATAG
CACCCCAGAAGAGCGGCCTACCCCAGAAGAGGCAGCGCGGCGAACGCTGG
AAGTCCTGCGGAGACGCGTCCCACCTGCTGTCCCCGGCATTATGTTTTTG
TCAGGGGGACAAACTGAAGAACAAGCCACGCAAAATCTGACCCTAATCAA
CCAGCTCGCCAAGCGAGCTCCCTCCTCCTTCCGTCCCTCCCTCACGACTT
GTCCCTGGATCTTAAGCTTCTCCTTTGGTCGGTCGTTGCAAGCCTCAGTG
CTGGCTGCGTGGATGGGAAAGGAAGAAAACTACACCGCAGCAGTGGCAAT
AGCAGGCGAGTTGGCAAAGGCAAATGCTCAAGCACAACTAGGGGAGTATG
TCGGTCCACATCCTTCTCTGCTGAAAGACAAGAGCCTCCATGAAACAAAC
AGGGGTTTCTACGGCCAGGGCGTCGCAGGAGTAGCTGGGGCAGCAGCGTC
AGGAGAGAAGGAGAAGACTGCTGAGGCTCCTACAGAGGGGTTGGCCGAGA
AGCCGGGCGAGGAAGAGGTAGGGAAGGCGGACATACAAGCGGCAGTTTCT
GCTGATGCGACAGAACGAGAAAGCAGCAGGAGCACGTTGTAGATGTCCTC
CTCCTCCGAGTCCGATTCCAATTCGGCCACAGCTCCCTCTCCTCCTGTGA
CGGCTCCCGCTCCGGTATCCATCTCCTCGCATGGCCTTGAGGCCTATCAC
ACGCACCTCGTGGAGGCCGCCAAGCTGGCTACACAATTGACACAGGAGCA
AAAGGACGCCCTCGAGACAATCGCGAATCAAATGGCCCGTCCCGGGCGGG
GTCTGCTGGCCGCCGACGAAAGCGTGCCCACTCTGGGCAAGCGCCTAGTG
GCCGCCGGGTTGGTCAATGATGAAGAGACGAGACGGGCTTACCGTGAGGT
GTTGTTTGGTCACCCTGAAATGGGGGAGTACCTGAGTGGTGCCATCCTCT
TCTCCGAGACACTTGGACAGAAAGCAATCAAGGACCCAGAAGGCCGTCTC
TTTCCCGCATTGTTGCAAAGCAAGGGCGTCCTGCCCGGCGTTAAGGTTGA
CACCGGCTTGGAACCCTTGGGGTACTCTCCGCGGGAGACGCATACCACAG
GCATGGACGACCTGATGAAACGTTGCCAAGGGTTTTATGCGCAAGGCGCG
CGCTTTGCGAAATGGCGGGCTGTCATCCGAATCGATGAGACGGCACAGTT
GCCCACCCGCGCATGCATGCAGATCAACAGTGCAGAGCTCGCGAGGTACG
CGGCAGTGTGCCAGGCGTGTGGGCTTGTGCCCATTGTGGAGCCGGAAATT
TTGATTGAGGGAAGCCATACTGCGGAGACGTTTGCGAGGGTGACCGAGGC
GGCGTTGAGCGAGGTTTATTACACCATGGCGCAAGCAAAGGTGTTTTTGG
AAGGCACGTTGCTCAAGCCCCAAATGGTCATGCCAGGAGTCGATAGCACC
CCAGAAGAGCGGCCTACCCCAGAAGAGGCAGCGCGGCGAACGCTGGAAGT
CCTGCGGAGACGCGTCCCACCTGCTGTCCCCGGCATTATGTTTTTGTCAG
GGGGACAAACTGAAGAACAAGCCACGCAAAATCTGACCCTAATCAACCAG
CTCGCCAAGCGAGCTCCCTCCTCCTTCCGTCCCTCCCTCACGACTTGTCC
CTGGATCTTAAGCTTCTCCTTTGGTCGGTCGTTGCAAGCCTCAGTGCTGG
CTGCGTGGATGGGAAAGGAAGAAAACTACACCGCAGCAGTGGCAATAGCA
GGCGAGTTGGCAAAGGCAAATGCTCAAGCACAACTAGGGGAGTATGTCGG
TCCACATCCTTCTCTGCTGAAAGACAAGAGCCTCCATGAAACAAACAGGG
GTTTCTACGGCCAGGGCGTCGCAGGAGTAGCTGGGGCAGCAGCGTCAGGA
GAGAAGGAGAAGACTGCTGAGGCTCCTACAGAGGGGTTGGCCGAGAAGCC
GGGCGAGGAAGAGGTAGGGAAGGCGGACATACAAGCGGCAGTTTCTGCTG
ATGCGACAGAACGAGAAAGCAGCAGGAGCACGTTGTAG

Synonyms

Publications