jgi.p|Nanoce1779_2|591284, mRNA_5064 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591284
Unique Name	mRNA_5064
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1663
Alignment location	scaffold_12:365598..367559 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591370
Track	FilteredModels2
ProteinId	591284

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:365598..367559 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591284	gene_5064	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591284	mRNA_5064-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5064	CDS_5064	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:365598..367559-
coding sequence from alignment at scaffold_12:365598..367559-

mRNA sequence

>mRNA_5064 ID=mRNA_5064|Name=jgi.p|Nanoce1779_2|591284|organism=Nannochloropsis oceanica|type=mRNA|length=1663bp
ACAGGCACTGGTCGCAAGACCTGATACTTCGTCGATTGACCCCCTTCTCT
GGACAATTTGGGCTGCCGTATCTCTCACTCATCCTTTCTCTGTGCTGATC
CCGACCCTGCAGTCGTCAAGGCATGTCATCCTTAGCCGCGGCGCAAGCCG
ACGGGTATTACCGTCCCCCAGACTGGGATGGCAAGGCTTCCTTGAACAAG
ATCACCGGCTCCAAAGGCCACAACCAGTTCACACAAAAGGGTGTGGTCCG
CTTCGAGCTTCCATACAACAGCTGGTGTTTGAAATGTGAATCCCACATCG
GCAAGGGCGTGCGCTTCAATGCCACAAAAGTGCAGGCCGGCAACTACTTC
TCCACGAAAATTTGGGAATTCCGCATGAAATGTGCCACGTGCAAGAATCT
TCTCATCATCAGGACGGACCCGAAGAATTGCGATTACGAGTTTGTGGAGG
GGATCCGGAGGCGCGAGCAAGAATATGACGCAGAGTCTATTGGCTTGCCT
GTGTTGTCGGTAGAGCCTTCTGGAGCTGCCGGAGGTGTAGAAGGGAAAGG
AAAAGCAGGTGTTCCTATATCAGCCAATGCGCCTCATGCGGGTGTGTCGG
TCGATCCGTTGGAGGTCTTGGAGAGAAGTAAGGACCACAAGCGACAGATG
AATGCAGCAGCAGCCCGATTGCAGGAATTGATGGACGCAAACAACAGGCT
AGAGGCAGATACAAGTGGAGTGAATCGGCTCATGCGGACGAAATTCCGCC
AAGAGAAGAAAGTGTTGCAGGAATTGGAGGCCGAGAGTGCGGCGAAGGGT
TTTCGGTTTCGAATGTTGCCTGCCAGTGAGGAGGATGGGAAGGAGGGGCC
GGCTGTGTTGCTCGCGGGAGGGTCGGGCGGACTGACCCGTGCTCGGCGAG
AAGGGTTTAGGAAAGGGGCCAAGGCAAAATTCACTAGTATTATGAGCTCA
TCGATTTTCGATGGGGATGGCAGTTCGCATAAGAAACGCGACACTCAGTC
GTCGTCGTCATCGTCCGCGTTGGTGGTATCGGGGCGGCGGGGGAGCAGCA
GTAGGAGTAGCAGCAGTAGAGACCTGCAGAGCAAGGCGGTGGTGGCTGCT
GACGCGAAGAAAGCTTTAGCTGTCAAGCGCGCCAAGTTGGGCATTAATCC
GGCAAATTTTAGTGTGCCCTCTACTGGTAGTTCGTCGTCTGTCTTGTCGA
CAGTGGTTGCGCGAAAGAAAGGCTAAGATACACCTGGGGGCTGGAAACCT
TGTACATTTTTGTAAGAACACATGTATTATTAAATGTATTAAAGCTCTAA
AAAGTCAAAGAAACAAAGGCACACGCATGTGTTATATATATATATCCTGG
AAAATAACATACCATCATGGGCTCGCGCGCAACCCAGCTTCAACAAGGCC
TCGCCAGCCTCACTTTGCACTTGATGCTGTTGCTTCCAAGTTCGTCCCGC
TGCATTAAGGTCGGACAAAATCCAACTCCGGCAAACAGACACTTCGCCTG
TAAGCTATGAGGTGACCTCTTCATGGTCTACCTGGGGCGCTGTGATGGGG
AGGCCAGTGGTCGGGTTCTCCATACGACCTACACCGCGGCTTTCGTCCAA
GATGGGTATCACTCACGAACACCATACCTCACACCCACACACAGGCGCCA
TGCCGCAGCCGCT

protein sequence of jgi.p|Nanoce1779_2|591284

>mRNA_5064-protein ID=mRNA_5064-protein|Name=jgi.p|Nanoce1779_2|591284|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MSSLAAAQADGYYRPPDWDGKASLNKITGSKGHNQFTQKGVVRFELPYNS
WCLKCESHIGKGVRFNATKVQAGNYFSTKIWEFRMKCATCKNLLIIRTDP
KNCDYEFVEGIRRREQEYDAESIGLPVLSVEPSGAAGGVEGKGKAGVPIS
ANAPHAGVSVDPLEVLERSKDHKRQMNAAAARLQELMDANNRLEADTSGV
NRLMRTKFRQEKKVLQELEAESAAKGFRFRMLPASEEDGKEGPAVLLAGG
SGGLTRARREGFRKGAKAKFTSIMSSSIFDGDGSSHKKRDTQSSSSSSAL
VVSGRRGSSSRSSSSRDLQSKAVVAADAKKALAVKRAKLGINPANFSVPS
TGSSSSVLSTVVARKKG*

mRNA from alignment at scaffold_12:365598..367559-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5064 ID=mRNA_5064|Name=jgi.p|Nanoce1779_2|591284|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp|location=Sequence derived from alignment at scaffold_12:365598..367559- (Nannochloropsis oceanica)
ACAGGCACTGGTCGCAAGACCTGATACTTCGTCGATTGACCCCCTTCTCT
GGACAATTTGGGCTGCCGTATCTCTCACTCATCCTTTCTCTGTGCTGATC
CCGACCCTGCAGTCGTCAAGGCATGTCATCCTTAGCCGCGGCGCAAGCCG
ACGGGTATTACCGTCCCCCAGACTGGGATGGCAAGGCTTCCTTGAACAAG
ATCACCGGCTCCAAAGGTGTGTGGTACTATGTGTGATGTGGTGGTTCCAG
GGTCTGAGTATCAGATTTGTCCCTCGGGACTGACCCTATCCCTCCACCAA
TTTTAAATCCCCTCCTACAGGCCACAACCAGTTCACACAAAAGGGTGTGG
TCCGCTTCGAGCTTCCATACAACAGCTGGTGTTTGAAATGTGAATCCCAC
ATCGGCAAGGGCGTGCGCTTCAATGCCACAAAAGTGCAGGTGCGCTCGTG
TGAAAGGTTGACAATGGTTACTCCGCGTGTGAGTGTATGTGTGAGATGTT
CCTTGTATATCTTCTATTTCCCGCGCATCCCTTGCAATGCATATGTTGTG
TCCCTCTGCCGCAATTTTTAGGCCTCACGGGTGCTTTCCCTATTCTCCCT
CCCTCGCCCCCCATCCCTCCTCCCTCTCTTGAAGGCCGGCAACTACTTCT
CCACGAAAATTTGGGAATTCCGCATGAAATGTGCCACGTGCAAGAATCTT
CTCATCATCAGGACGGACCCGAAGAATTGCGATTACGAGTTTGTGGAGGG
GATCCGGAGGCGCGAGCAAGAATATGACGCAGAGTCTATTGGCTTGCCTG
TGTTGTCGGTAGAGCCTTCTGGAGCTGCCGGAGGTGTAGAAGGGAAAGGA
AAAGCAGGTGTTCCTATATCAGCCAATGCGCCTCATGCGGGTGTGTCGGT
CGATCCGTTGGAGGTCTTGGAGAGAAGTAAGGACCACAAGCGACAGATGA
ATGCAGCAGCAGCCCGATTGCAGGAATTGATGGACGCAAACAACAGGCTA
GAGGCAGATACAAGTGGAGTGAATCGGCTCATGCGGACGAAATTCCGCCA
AGAGAAGAAAGTGTTGCAGGAATTGGAGGCCGAGAGTGCGGCGAAGGGTT
TTCGGTTTCGAATGTTGCCTGCCAGTGAGGAGGATGGGAAGGAGGGGCCG
GCTGTGTTGCTCGCGGGAGGGTCGGGCGGACTGACCCGTGCTCGGCGAGA
AGGGTTTAGGAAAGGGGCCAAGGCAAAATTCACTAGTATTATGAGCTCAT
CGATTTTCGATGGGGATGGCAGTTCGCATAAGAAACGCGACACTCAGTCG
TCGTCGTCATCGTCCGCGTTGGTGGTATCGGGGCGGCGGGGGAGCAGCAG
TAGGAGTAGCAGCAGTAGAGACCTGCAGAGCAAGGCGGTGGTGGCTGCTG
ACGCGAAGAAAGCTTTAGCTGTCAAGCGCGCCAAGTTGGGCATTAATCCG
GCAAATTTTAGTGTGCCCTCTACTGGTAGTTCGTCGTCTGTCTTGTCGAC
AGTGGTTGCGCGAAAGAAAGGCTAAGATACACCTGGGGGCTGGAAACCTT
GTACATTTTTGTAAGAACACATGTATTATTAAATGTATTAAAGCTCTAAA
AAGTCAAAGAAACAAAGGCACACGCATGTGTTATATATATATATCCTGGA
AAATAACATACCATCATGGGCTCGCGCGCAACCCAGCTTCAACAAGGCCT
CGCCAGCCTCACTTTGCACTTGATGCTGTTGCTTCCAAGTTCGTCCCGCT
GCATTAAGGTCGGACAAAATCCAACTCCGGCAAACAGACACTTCGCCTGT
AAGCTATGAGGTGACCTCTTCATGGTCTACCTGGGGCGCTGTGATGGGGA
GGCCAGTGGTCGGGTTCTCCATACGACCTACACCGCGGCTTTCGTCCAAG
ATGGGTATCACTCACGAACACCATACCTCACACCCACACACAGGCGCCAT
GCCGCAGCCGCT

Coding sequence (CDS) from alignment at scaffold_12:365598..367559-

>mRNA_5064 ID=mRNA_5064|Name=jgi.p|Nanoce1779_2|591284|organism=Nannochloropsis oceanica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_12:365598..367559- (Nannochloropsis oceanica)
GCCGGCAACTACTTCTCCACGAAAATTTGGGAATTCCGCATGAAATGTGC
CACGTGCAAGAATCTTCTCATCATCAGGACGGACCCGAAGAATTGCGATT
ACGAGTTTGTGGAGGGGATCCGGAGGCGCGAGCAAGAATATGACGCAGAG
TCTATTGGCTTGCCTGTGTTGTCGGTAGAGCCTTCTGGAGCTGCCGGAGG
TGTAGAAGGGAAAGGAAAAGCAGGTGTTCCTATATCAGCCAATGCGCCTC
ATGCGGGTGTGTCGGTCGATCCGTTGGAGGTCTTGGAGAGAAGTAAGGAC
CACAAGCGACAGATGAATGCAGCAGCAGCCCGATTGCAGGAATTGATGGA
CGCAAACAACAGGCTAGAGGCAGATACAAGTGGAGTGAATCGGCTCATGC
GGACGAAATTCCGCCAAGAGAAGAAAGTGTTGCAGGAATTGGAGGCCGAG
AGTGCGGCGAAGGGTTTTCGGTTTCGAATGTTGCCTGCCAGTGAGGAGGA
TGGGAAGGAGGGGCCGGCTGTGTTGCTCGCGGGAGGGTCGGGCGGACTGA
CCCGTGCTCGGCGAGAAGGGTTTAGGAAAGGGGCCAAGGCAAAATTCACT
AGTATTATGAGCTCATCGATTTTCGATGGGGATGGCAGTTCGCATAAGAA
ACGCGACACTCAGTCGTCGTCGTCATCGTCCGCGTTGGTGGTATCGGGGC
GGCGGGGGAGCAGCAGTAGGAGTAGCAGCAGTAGAGACCTGCAGAGCAAG
GCGGTGGTGGCTGCTGACGCGAAGAAAGCTTTAGCTGTCAAGCGCGCCAA
GTTGGGCATTAATCCGGCAAATTTTAGTGTGCCCTCTACTGGTAGTTCGT
CGTCTGTCTTGTCGACAGTGGTTGCGCGAAAGAAAGGCTAAGCCACAACC
AGTTCACACAAAAGGGTGTGGTCCGCTTCGAGCTTCCATACAACAGCTGG
TGTTTGAAATGTGAATCCCACATCGGCAAGGGCGTGCGCTTCAATGCCAC
AAAAGTGCAGATGTCATCCTTAGCCGCGGCGCAAGCCGACGGGTATTACC
GTCCCCCAGACTGGGATGGCAAGGCTTCCTTGAACAAGATCACCGGCTCC
AAAGGCCGGCAACTACTTCTCCACGAAAATTTGGGAATTCCGCATGAAAT
GTGCCACGTGCAAGAATCTTCTCATCATCAGGACGGACCCGAAGAATTGC
GATTACGAGTTTGTGGAGGGGATCCGGAGGCGCGAGCAAGAATATGACGC
AGAGTCTATTGGCTTGCCTGTGTTGTCGGTAGAGCCTTCTGGAGCTGCCG
GAGGTGTAGAAGGGAAAGGAAAAGCAGGTGTTCCTATATCAGCCAATGCG
CCTCATGCGGGTGTGTCGGTCGATCCGTTGGAGGTCTTGGAGAGAAGTAA
GGACCACAAGCGACAGATGAATGCAGCAGCAGCCCGATTGCAGGAATTGA
TGGACGCAAACAACAGGCTAGAGGCAGATACAAGTGGAGTGAATCGGCTC
ATGCGGACGAAATTCCGCCAAGAGAAGAAAGTGTTGCAGGAATTGGAGGC
CGAGAGTGCGGCGAAGGGTTTTCGGTTTCGAATGTTGCCTGCCAGTGAGG
AGGATGGGAAGGAGGGGCCGGCTGTGTTGCTCGCGGGAGGGTCGGGCGGA
CTGACCCGTGCTCGGCGAGAAGGGTTTAGGAAAGGGGCCAAGGCAAAATT
CACTAGTATTATGAGCTCATCGATTTTCGATGGGGATGGCAGTTCGCATA
AGAAACGCGACACTCAGTCGTCGTCGTCATCGTCCGCGTTGGTGGTATCG
GGGCGGCGGGGGAGCAGCAGTAGGAGTAGCAGCAGTAGAGACCTGCAGAG
CAAGGCGGTGGTGGCTGCTGACGCGAAGAAAGCTTTAGCTGTCAAGCGCG
CCAAGTTGGGCATTAATCCGGCAAATTTTAGTGTGCCCTCTACTGGTAGT
TCGTCGTCTGTCTTGTCGACAGTGGTTGCGCGAAAGAAAGGCTAAGCCAC
AACCAGTTCACACAAAAGGGTGTGGTCCGCTTCGAGCTTCCATACAACAG
CTGGTGTTTGAAATGTGAATCCCACATCGGCAAGGGCGTGCGCTTCAATG
CCACAAAAGTGCAGATGTCATCCTTAGCCGCGGCGCAAGCCGACGGGTAT
TACCGTCCCCCAGACTGGGATGGCAAGGCTTCCTTGAACAAGATCACCGG
CTCCAAAGGCCGGCAACTACTTCTCCACGAAAATTTGGGAATTCCGCATG
AAATGTGCCACGTGCAAGAATCTTCTCATCATCAGGACGGACCCGAAGAA
TTGCGATTACGAGTTTGTGGAGGGGATCCGGAGGCGCGAGCAAGAATATG
ACGCAGAGTCTATTGGCTTGCCTGTGTTGTCGGTAGAGCCTTCTGGAGCT
GCCGGAGGTGTAGAAGGGAAAGGAAAAGCAGGTGTTCCTATATCAGCCAA
TGCGCCTCATGCGGGTGTGTCGGTCGATCCGTTGGAGGTCTTGGAGAGAA
GTAAGGACCACAAGCGACAGATGAATGCAGCAGCAGCCCGATTGCAGGAA
TTGATGGACGCAAACAACAGGCTAGAGGCAGATACAAGTGGAGTGAATCG
GCTCATGCGGACGAAATTCCGCCAAGAGAAGAAAGTGTTGCAGGAATTGG
AGGCCGAGAGTGCGGCGAAGGGTTTTCGGTTTCGAATGTTGCCTGCCAGT
GAGGAGGATGGGAAGGAGGGGCCGGCTGTGTTGCTCGCGGGAGGGTCGGG
CGGACTGACCCGTGCTCGGCGAGAAGGGTTTAGGAAAGGGGCCAAGGCAA
AATTCACTAGTATTATGAGCTCATCGATTTTCGATGGGGATGGCAGTTCG
CATAAGAAACGCGACACTCAGTCGTCGTCGTCATCGTCCGCGTTGGTGGT
ATCGGGGCGGCGGGGGAGCAGCAGTAGGAGTAGCAGCAGTAGAGACCTGC
AGAGCAAGGCGGTGGTGGCTGCTGACGCGAAGAAAGCTTTAGCTGTCAAG
CGCGCCAAGTTGGGCATTAATCCGGCAAATTTTAGTGTGCCCTCTACTGG
TAGTTCGTCGTCTGTCTTGTCGACAGTGGTTGCGCGAAAGAAAGGCTAAG
CCACAACCAGTTCACACAAAAGGGTGTGGTCCGCTTCGAGCTTCCATACA
ACAGCTGGTGTTTGAAATGTGAATCCCACATCGGCAAGGGCGTGCGCTTC
AATGCCACAAAAGTGCAGATGTCATCCTTAGCCGCGGCGCAAGCCGACGG
GTATTACCGTCCCCCAGACTGGGATGGCAAGGCTTCCTTGAACAAGATCA
CCGGCTCCAAAG

Synonyms

Publications