Properties
| Property Name | Value |
|---|
| TranscriptId | 591365 |
| Track | FilteredModels2 |
| ProteinId | 591279 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:359224..361214 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5062 ID=mRNA_5062|Name=jgi.p|Nanoce1779_2|591279|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp
CAGTCAGGGTCAATCGAGACACAAGCCACCGCAGCGAGAGGAAGATGAAA
GACGACCCGTTGTCCTTCAAGGTACTGAATGTCTTCAATGACTTCCTTCA
CCTCCCCATCGTTGACGACTTGATATGGCACCTCTACCACATTATTCGCC
TTCTCCTTTGCCCTCTTGGGGCCATTGGCGTGCTGCTATCCTTCCTTATC
AAGCTCTGTTCAGGCGCCTTCATCACGCGCTTCGAGGCCCCGAAAGGACG
TGCTATTCTTGTGACAGGCTGTGACTCGGGGTTTGGATGCGATTTTTCTT
TATCACTGGTCAAGAAAGGATGGAAGGTCTATGCCGGCTGCTTAACCCCG
CAAGGCGTGGCTGCGCTTCAGACCAGGGCGGCCGGCAGTGCGGGAACCAT
GATAGCATTGCCGATGGACGTGACAAAGCAGGCGGACATTGACCGTATGG
TAAAAAAGATCAAGGAGGAGTGCCCGAAGAAACTTTTTGCGGTGGTGAAT
AACGCTGGGGTGGGTCAGGGAGGTCTTGTGGATTGGACGCCTTTGGAGTC
CTATCGCAAGACGCTGGAAGTGAACCTGTTTGCCATGATCGCAGTCTGCA
AGGCTTGCCTGCCGTTGTTGAAGGAATCGAAAGGTCGGATTGTTAATGTT
ACGAGCATTGCCGGTATCTTTTATGGCGCTCCCTGTATGAGTGCCTATGC
AGCCTCCAAACACGCTGCCGAGGCCTTCACGACATCGCTTCGCTTCGAGA
TGGAAGGATGGGGAATCAAGGTTATCACTATTAACCCCTCTTTTCACCGT
ACGCAAATTGCGACGGGCGCCGCGGCCACGCTCAAGACCTCATACGACGC
CCTGGACGACGTCACCAAGGCAGAATATGGGCCGGAGTACCTGGCGGCCG
TGCAGAGACTGACATCGGACCACACGGACGGTTGCTGGGACCCAAGTCAC
GTAGTGAATGCCTTGATGAAGGCCACCACTGCGGTAATGCCACGCACTCA
GTATATCGTTGGGGCGGACGCTACCTTTTACTTACTGCCTCTCATGAATC
TACCTACCCCGGTTGTTGAAAAACTAATGACTGTGTCTCTCCTTAAGGAG
TTGGTTCCTGCGAGGGAGAAGGCGGCACTTGCTCTGCAGAAGAATGCGAA
GGGGAAAGAGGGAAAGAAGACGAAGTAGATAAATCAGTGGCGATGAGCAA
GAGAGAGGATGTTGGAGGTGGGAAAGGAATTTAAAATGGGCCCTCCTTGT
TCTTGCCCTTTTTTCTCGTTGATGGCCAAAGAGGGGAAAGGGATCAATCA
ATAATCAAACATTCGGTAAATATTGTACCCATTCTTCCTCCCTTTTCTAC
TGCACATGCACAAAGAGGCAGCACTCCATTGACACTTTTATACAGAAATG
TAGCCTTGCATATACGTACGTACATACATGTAGTCCCATCCCAAAGGGAC
TTCGAGCTATCAACGAGTGAGAGGAATACACACTTTCGCGAGATTTCTGA
AGCCCGAATAAGCTGAAAGCCAACCCAGGAATGAGAAAGTAACAACTGCG
AACAAAACCAGCAGAGAGGGACAAAGGAAAGAAAAAACAGATACCGAAAA
TAAGGAAGATATGC back to topprotein sequence of jgi.p|Nanoce1779_2|591279 >mRNA_5062-protein ID=mRNA_5062-protein|Name=jgi.p|Nanoce1779_2|591279|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MKDDPLSFKVLNVFNDFLHLPIVDDLIWHLYHIIRLLLCPLGAIGVLLSF
LIKLCSGAFITRFEAPKGRAILVTGCDSGFGCDFSLSLVKKGWKVYAGCL
TPQGVAALQTRAAGSAGTMIALPMDVTKQADIDRMVKKIKEECPKKLFAV
VNNAGVGQGGLVDWTPLESYRKTLEVNLFAMIAVCKACLPLLKESKGRIV
NVTSIAGIFYGAPCMSAYAASKHAAEAFTTSLRFEMEGWGIKVITINPSF
HRTQIATGAAATLKTSYDALDDVTKAEYGPEYLAAVQRLTSDHTDGCWDP
SHVVNALMKATTAVMPRTQYIVGADATFYLLPLMNLPTPVVEKLMTVSLL
KELVPAREKAALALQKNAKGKEGKKTK* back to topmRNA from alignment at scaffold_12:359224..361214- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5062 ID=mRNA_5062|Name=jgi.p|Nanoce1779_2|591279|organism=Nannochloropsis oceanica|type=mRNA|length=1991bp|location=Sequence derived from alignment at scaffold_12:359224..361214- (Nannochloropsis oceanica)
CAGTCAGGGTCAATCGAGACACAAGCCACCGCAGCGAGAGGAAGATGAAA
GACGACCCGTTGTCCTTCAAGGTGTAAGTACCCGTGTTTTGTCAGTTCGC
TTGTTTGACCATCCGAGGTCCGCTTGTCTTCCCTCAACAACTGTACCAGA
GCCACTTGCTTGCCTCGTCCCCACCACATCACTCATGCCTCATTCCCCCC
TCCCTTCTTGCCCCCTTCAGACTGAATGTCTTCAATGACTTCCTTCACCT
CCCCATCGTTGACGACTTGATATGGCACCTCTACCACATTATTCGCCTTC
TCCTTTGCCCTCTTGGGGCCATTGGCGTGCTGCTATCCTTCCTTATCAAG
CTCTGTTCAGGCGCCTTCATCACGCGCTTCGAGGCCCCGAAAGGACGTGC
TATTCTTGTGACAGGCTGTGACTCGGGGTTTGGATGCGATTTTTCTTTAT
CACTGGTCAAGAAAGGATGGAAGGTCTATGCCGGCTGCTTAACCCCGCAA
GGCGTGGCTGCGCTTCAGACCAGGGCGGCCGGCAGTGCGGGAACCATGAT
AGCATTGCCGATGGACGTGACAAAGCAGGCGGACATTGACCGTATGGTAA
AAAAGATCAAGGAGGAGTGCCCGAAGAAACTTTTTGCGGTGGTGAATAAC
GCTGGGGTGGGTCAGGGAGGTCTTGTGGATTGGACGCCTTTGGAGTCCTA
TCGCAAGACGCTGGAAGTGAACCTGTTTGCCATGATCGCAGTCTGCAAGG
CTTGCCTGCCGTTGTTGAAGGAATCGAAAGGTCGGATTGTTAATGTTACG
AGCATTGCCGGTATCTTTTATGGCGCTCCCTGTATGAGTGCCTATGCAGC
CTCCAAACACGGTACGCCGGAGACCAGCATAAAAACAACCACGCCGCTGC
TGCTGTCTTTCCTGATTTATTTTATTAATATAATTTTTCTTCATCTCTTT
CCACAATTGCCATAGCTGCCGAGGCCTTCACGACATCGCTTCGCTTCGAG
ATGGAAGGATGGGGAATCAAGGTGAGAAAAGGACGAGGAAGCAAGGAAAG
TTAACAAAATCAGGGGGAATGGAAGGGGAGACATATGTAAGCCCGGAAAA
AGCCCGTTTCATTCACCCACCCCGCTTTCCCTTAATTCACCCACTAGGTT
ATCACTATTAACCCCTCTTTTCACCGTACGCAAATTGCGACGGGCGCCGC
GGCCACGCTCAAGACCTCATACGACGCCCTGGACGACGTCACCAAGGCAG
AATATGGGCCGGAGTACCTGGCGGCCGTGCAGAGACTGACATCGGACCAC
ACGGACGGTTGCTGGGACCCAAGTCACGTAGTGAATGCCTTGATGAAGGC
CACCACTGCGGTAATGCCACGCACTCAGTATATCGTTGGGGCGGACGCTA
CCTTTTACTTACTGCCTCTCATGAATCTACCTACCCCGGTTGTTGAAAAA
CTAATGACTGTGTCTCTCCTTAAGGAGTTGGTTCCTGCGAGGGAGAAGGC
GGCACTTGCTCTGCAGAAGAATGCGAAGGGGAAAGAGGGAAAGAAGACGA
AGTAGATAAATCAGTGGCGATGAGCAAGAGAGAGGATGTTGGAGGTGGGA
AAGGAATTTAAAATGGGCCCTCCTTGTTCTTGCCCTTTTTTCTCGTTGAT
GGCCAAAGAGGGGAAAGGGATCAATCAATAATCAAACATTCGGTAAATAT
TGTACCCATTCTTCCTCCCTTTTCTACTGCACATGCACAAAGAGGCAGCA
CTCCATTGACACTTTTATACAGAAATGTAGCCTTGCATATACGTACGTAC
ATACATGTAGTCCCATCCCAAAGGGACTTCGAGCTATCAACGAGTGAGAG
GAATACACACTTTCGCGAGATTTCTGAAGCCCGAATAAGCTGAAAGCCAA
CCCAGGAATGAGAAAGTAACAACTGCGAACAAAACCAGCAGAGAGGGACA
AAGGAAAGAAAAAACAGATACCGAAAATAAGGAAGATATGC back to topCoding sequence (CDS) from alignment at scaffold_12:359224..361214- >mRNA_5062 ID=mRNA_5062|Name=jgi.p|Nanoce1779_2|591279|organism=Nannochloropsis oceanica|type=CDS|length=4536bp|location=Sequence derived from alignment at scaffold_12:359224..361214- (Nannochloropsis oceanica)
GTTATCACTATTAACCCCTCTTTTCACCGTACGCAAATTGCGACGGGCGC
CGCGGCCACGCTCAAGACCTCATACGACGCCCTGGACGACGTCACCAAGG
CAGAATATGGGCCGGAGTACCTGGCGGCCGTGCAGAGACTGACATCGGAC
CACACGGACGGTTGCTGGGACCCAAGTCACGTAGTGAATGCCTTGATGAA
GGCCACCACTGCGGTAATGCCACGCACTCAGTATATCGTTGGGGCGGACG
CTACCTTTTACTTACTGCCTCTCATGAATCTACCTACCCCGGTTGTTGAA
AAACTAATGACTGTGTCTCTCCTTAAGGAGTTGGTTCCTGCGAGGGAGAA
GGCGGCACTTGCTCTGCAGAAGAATGCGAAGGGGAAAGAGGGAAAGAAGA
CGAAGTAGCTGCCGAGGCCTTCACGACATCGCTTCGCTTCGAGATGGAAG
GATGGGGAATCAAGACTGAATGTCTTCAATGACTTCCTTCACCTCCCCAT
CGTTGACGACTTGATATGGCACCTCTACCACATTATTCGCCTTCTCCTTT
GCCCTCTTGGGGCCATTGGCGTGCTGCTATCCTTCCTTATCAAGCTCTGT
TCAGGCGCCTTCATCACGCGCTTCGAGGCCCCGAAAGGACGTGCTATTCT
TGTGACAGGCTGTGACTCGGGGTTTGGATGCGATTTTTCTTTATCACTGG
TCAAGAAAGGATGGAAGGTCTATGCCGGCTGCTTAACCCCGCAAGGCGTG
GCTGCGCTTCAGACCAGGGCGGCCGGCAGTGCGGGAACCATGATAGCATT
GCCGATGGACGTGACAAAGCAGGCGGACATTGACCGTATGGTAAAAAAGA
TCAAGGAGGAGTGCCCGAAGAAACTTTTTGCGGTGGTGAATAACGCTGGG
GTGGGTCAGGGAGGTCTTGTGGATTGGACGCCTTTGGAGTCCTATCGCAA
GACGCTGGAAGTGAACCTGTTTGCCATGATCGCAGTCTGCAAGGCTTGCC
TGCCGTTGTTGAAGGAATCGAAAGGTCGGATTGTTAATGTTACGAGCATT
GCCGGTATCTTTTATGGCGCTCCCTGTATGAGTGCCTATGCAGCCTCCAA
ACACGATGAAAGACGACCCGTTGTCCTTCAAGGTGTTATCACTATTAACC
CCTCTTTTCACCGTACGCAAATTGCGACGGGCGCCGCGGCCACGCTCAAG
ACCTCATACGACGCCCTGGACGACGTCACCAAGGCAGAATATGGGCCGGA
GTACCTGGCGGCCGTGCAGAGACTGACATCGGACCACACGGACGGTTGCT
GGGACCCAAGTCACGTAGTGAATGCCTTGATGAAGGCCACCACTGCGGTA
ATGCCACGCACTCAGTATATCGTTGGGGCGGACGCTACCTTTTACTTACT
GCCTCTCATGAATCTACCTACCCCGGTTGTTGAAAAACTAATGACTGTGT
CTCTCCTTAAGGAGTTGGTTCCTGCGAGGGAGAAGGCGGCACTTGCTCTG
CAGAAGAATGCGAAGGGGAAAGAGGGAAAGAAGACGAAGTAGCTGCCGAG
GCCTTCACGACATCGCTTCGCTTCGAGATGGAAGGATGGGGAATCAAGAC
TGAATGTCTTCAATGACTTCCTTCACCTCCCCATCGTTGACGACTTGATA
TGGCACCTCTACCACATTATTCGCCTTCTCCTTTGCCCTCTTGGGGCCAT
TGGCGTGCTGCTATCCTTCCTTATCAAGCTCTGTTCAGGCGCCTTCATCA
CGCGCTTCGAGGCCCCGAAAGGACGTGCTATTCTTGTGACAGGCTGTGAC
TCGGGGTTTGGATGCGATTTTTCTTTATCACTGGTCAAGAAAGGATGGAA
GGTCTATGCCGGCTGCTTAACCCCGCAAGGCGTGGCTGCGCTTCAGACCA
GGGCGGCCGGCAGTGCGGGAACCATGATAGCATTGCCGATGGACGTGACA
AAGCAGGCGGACATTGACCGTATGGTAAAAAAGATCAAGGAGGAGTGCCC
GAAGAAACTTTTTGCGGTGGTGAATAACGCTGGGGTGGGTCAGGGAGGTC
TTGTGGATTGGACGCCTTTGGAGTCCTATCGCAAGACGCTGGAAGTGAAC
CTGTTTGCCATGATCGCAGTCTGCAAGGCTTGCCTGCCGTTGTTGAAGGA
ATCGAAAGGTCGGATTGTTAATGTTACGAGCATTGCCGGTATCTTTTATG
GCGCTCCCTGTATGAGTGCCTATGCAGCCTCCAAACACGATGAAAGACGA
CCCGTTGTCCTTCAAGGTGTTATCACTATTAACCCCTCTTTTCACCGTAC
GCAAATTGCGACGGGCGCCGCGGCCACGCTCAAGACCTCATACGACGCCC
TGGACGACGTCACCAAGGCAGAATATGGGCCGGAGTACCTGGCGGCCGTG
CAGAGACTGACATCGGACCACACGGACGGTTGCTGGGACCCAAGTCACGT
AGTGAATGCCTTGATGAAGGCCACCACTGCGGTAATGCCACGCACTCAGT
ATATCGTTGGGGCGGACGCTACCTTTTACTTACTGCCTCTCATGAATCTA
CCTACCCCGGTTGTTGAAAAACTAATGACTGTGTCTCTCCTTAAGGAGTT
GGTTCCTGCGAGGGAGAAGGCGGCACTTGCTCTGCAGAAGAATGCGAAGG
GGAAAGAGGGAAAGAAGACGAAGTAGCTGCCGAGGCCTTCACGACATCGC
TTCGCTTCGAGATGGAAGGATGGGGAATCAAGACTGAATGTCTTCAATGA
CTTCCTTCACCTCCCCATCGTTGACGACTTGATATGGCACCTCTACCACA
TTATTCGCCTTCTCCTTTGCCCTCTTGGGGCCATTGGCGTGCTGCTATCC
TTCCTTATCAAGCTCTGTTCAGGCGCCTTCATCACGCGCTTCGAGGCCCC
GAAAGGACGTGCTATTCTTGTGACAGGCTGTGACTCGGGGTTTGGATGCG
ATTTTTCTTTATCACTGGTCAAGAAAGGATGGAAGGTCTATGCCGGCTGC
TTAACCCCGCAAGGCGTGGCTGCGCTTCAGACCAGGGCGGCCGGCAGTGC
GGGAACCATGATAGCATTGCCGATGGACGTGACAAAGCAGGCGGACATTG
ACCGTATGGTAAAAAAGATCAAGGAGGAGTGCCCGAAGAAACTTTTTGCG
GTGGTGAATAACGCTGGGGTGGGTCAGGGAGGTCTTGTGGATTGGACGCC
TTTGGAGTCCTATCGCAAGACGCTGGAAGTGAACCTGTTTGCCATGATCG
CAGTCTGCAAGGCTTGCCTGCCGTTGTTGAAGGAATCGAAAGGTCGGATT
GTTAATGTTACGAGCATTGCCGGTATCTTTTATGGCGCTCCCTGTATGAG
TGCCTATGCAGCCTCCAAACACGATGAAAGACGACCCGTTGTCCTTCAAG
GTGTTATCACTATTAACCCCTCTTTTCACCGTACGCAAATTGCGACGGGC
GCCGCGGCCACGCTCAAGACCTCATACGACGCCCTGGACGACGTCACCAA
GGCAGAATATGGGCCGGAGTACCTGGCGGCCGTGCAGAGACTGACATCGG
ACCACACGGACGGTTGCTGGGACCCAAGTCACGTAGTGAATGCCTTGATG
AAGGCCACCACTGCGGTAATGCCACGCACTCAGTATATCGTTGGGGCGGA
CGCTACCTTTTACTTACTGCCTCTCATGAATCTACCTACCCCGGTTGTTG
AAAAACTAATGACTGTGTCTCTCCTTAAGGAGTTGGTTCCTGCGAGGGAG
AAGGCGGCACTTGCTCTGCAGAAGAATGCGAAGGGGAAAGAGGGAAAGAA
GACGAAGTAGCTGCCGAGGCCTTCACGACATCGCTTCGCTTCGAGATGGA
AGGATGGGGAATCAAGACTGAATGTCTTCAATGACTTCCTTCACCTCCCC
ATCGTTGACGACTTGATATGGCACCTCTACCACATTATTCGCCTTCTCCT
TTGCCCTCTTGGGGCCATTGGCGTGCTGCTATCCTTCCTTATCAAGCTCT
GTTCAGGCGCCTTCATCACGCGCTTCGAGGCCCCGAAAGGACGTGCTATT
CTTGTGACAGGCTGTGACTCGGGGTTTGGATGCGATTTTTCTTTATCACT
GGTCAAGAAAGGATGGAAGGTCTATGCCGGCTGCTTAACCCCGCAAGGCG
TGGCTGCGCTTCAGACCAGGGCGGCCGGCAGTGCGGGAACCATGATAGCA
TTGCCGATGGACGTGACAAAGCAGGCGGACATTGACCGTATGGTAAAAAA
GATCAAGGAGGAGTGCCCGAAGAAACTTTTTGCGGTGGTGAATAACGCTG
GGGTGGGTCAGGGAGGTCTTGTGGATTGGACGCCTTTGGAGTCCTATCGC
AAGACGCTGGAAGTGAACCTGTTTGCCATGATCGCAGTCTGCAAGGCTTG
CCTGCCGTTGTTGAAGGAATCGAAAGGTCGGATTGTTAATGTTACGAGCA
TTGCCGGTATCTTTTATGGCGCTCCCTGTATGAGTGCCTATGCAGCCTCC
AAACACGATGAAAGACGACCCGTTGTCCTTCAAGGT back to top
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