jgi.p|Nanoce1779_2|53010, mRNA_5060 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|53010
Unique NamemRNA_5060
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length841
Alignment locationscaffold_12:354907..355747 +

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Properties
Property NameValue
TranscriptId53096
TrackFilteredModels2
ProteinId53010
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:354907..355747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|53010gene_5060Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|53010mRNA_5060-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5060CDS_5060Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5060 ID=mRNA_5060|Name=jgi.p|Nanoce1779_2|53010|organism=Nannochloropsis oceanica|type=mRNA|length=841bp
TGCAAAATATGGACGGAGTGGGTTTCTAAGACAACGCTTAGAGGCGGATG
AATTGCTGGTACGTGATTGAATCTTGGGATTTGTAGAGTGTGTGTGTATG
TGTGTTCTATGTATGCATGCACGCCCTCTCCTCTCTGGCCCTACACCCGA
CACACCAACCTCTCCTTCCACAATATCCACGCAGGCCAACGTCAGACATG
CCTCTCCCCTCCTCCCTCTTTCCTTCCCTCAACGCCTCGCTCGCGCCAGG
CAAGCTTTTTGGGCCTCCCGGAAGAACATCGCTTACTCCCCTTCTGCCCT
GGTTAACATTCAAATCGAGGACGGGAGGGAGGGAGGGGGGGACGGACGGA
CAAGGTGGTGGACCGTCCCTGCAGCTTTGGCCGGATTCAAGCTCAATTGG
ATGGAGCTGAAACAAATACCGTTGAGGAGATACGTCGTGCCGATGGAGGA
AGGGGAGGGAGGGAGAGAGGCAGGGGCAGCATTTGATTTCGGGGTGCTGG
TGAAAGAGAGTGCGGTGGTAGCGTTGGCAAAGAAATTGCAGAAGGGACGA
TACAATGAGTATAGGAGAAAGGCCCGCAAGAGAGGATTGTGGGTTGAGTG
GGTGAAGGAGAGGTATCAAGAAGCAGTAGAGGAAGGGGCGGAGGGCGGGG
AGGGTGACGAACGGTTGGTGGACTGTGTGGAAGGGAGTGCATTCGGCTGG
CATCAGACGACGACGGATACGTATAATGCGAGTCGAAGCATGTCATCGGT
TTCGGATTTGGTGGGCGTGAAGTGGTGAGTGAGGGGGAAGGGAGGGAAGG
AGGGAAACCTTGTTTCCCATAAGAGTGGGATTAAGAGGTGC
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protein sequence of jgi.p|Nanoce1779_2|53010

>mRNA_5060-protein ID=mRNA_5060-protein|Name=jgi.p|Nanoce1779_2|53010|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MCVLCMHARPLLSGPTPDTPTSPSTISTQANVRHASPLLPLSFPQRLARA
RQAFWASRKNIAYSPSALVNIQIEDGREGGGDGRTRWWTVPAALAGFKLN
WMELKQIPLRRYVVPMEEGEGGREAGAAFDFGVLVKESAVVALAKKLQKG
RYNEYRRKARKRGLWVEWVKERYQEAVEEGAEGGEGDERLVDCVEGSAFG
WHQTTTDTYNASRSMSSVSDLVGVKW*
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mRNA from alignment at scaffold_12:354907..355747+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5060 ID=mRNA_5060|Name=jgi.p|Nanoce1779_2|53010|organism=Nannochloropsis oceanica|type=mRNA|length=841bp|location=Sequence derived from alignment at scaffold_12:354907..355747+ (Nannochloropsis oceanica)
TGCAAAATATGGACGGAGTGGGTTTCTAAGACAACGCTTAGAGGCGGATG
AATTGCTGGTACGTGATTGAATCTTGGGATTTGTAGAGTGTGTGTGTATG
TGTGTTCTATGTATGCATGCACGCCCTCTCCTCTCTGGCCCTACACCCGA
CACACCAACCTCTCCTTCCACAATATCCACGCAGGCCAACGTCAGACATG
CCTCTCCCCTCCTCCCTCTTTCCTTCCCTCAACGCCTCGCTCGCGCCAGG
CAAGCTTTTTGGGCCTCCCGGAAGAACATCGCTTACTCCCCTTCTGCCCT
GGTTAACATTCAAATCGAGGACGGGAGGGAGGGAGGGGGGGACGGACGGA
CAAGGTGGTGGACCGTCCCTGCAGCTTTGGCCGGATTCAAGCTCAATTGG
ATGGAGCTGAAACAAATACCGTTGAGGAGATACGTCGTGCCGATGGAGGA
AGGGGAGGGAGGGAGAGAGGCAGGGGCAGCATTTGATTTCGGGGTGCTGG
TGAAAGAGAGTGCGGTGGTAGCGTTGGCAAAGAAATTGCAGAAGGGACGA
TACAATGAGTATAGGAGAAAGGCCCGCAAGAGAGGATTGTGGGTTGAGTG
GGTGAAGGAGAGGTATCAAGAAGCAGTAGAGGAAGGGGCGGAGGGCGGGG
AGGGTGACGAACGGTTGGTGGACTGTGTGGAAGGGAGTGCATTCGGCTGG
CATCAGACGACGACGGATACGTATAATGCGAGTCGAAGCATGTCATCGGT
TTCGGATTTGGTGGGCGTGAAGTGGTGAGTGAGGGGGAAGGGAGGGAAGG
AGGGAAACCTTGTTTCCCATAAGAGTGGGATTAAGAGGTGC
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Coding sequence (CDS) from alignment at scaffold_12:354907..355747+

>mRNA_5060 ID=mRNA_5060|Name=jgi.p|Nanoce1779_2|53010|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_12:354907..355747+ (Nannochloropsis oceanica)
ATGTGTGTTCTATGTATGCATGCACGCCCTCTCCTCTCTGGCCCTACACC
CGACACACCAACCTCTCCTTCCACAATATCCACGCAGGCCAACGTCAGAC
ATGCCTCTCCCCTCCTCCCTCTTTCCTTCCCTCAACGCCTCGCTCGCGCC
AGGCAAGCTTTTTGGGCCTCCCGGAAGAACATCGCTTACTCCCCTTCTGC
CCTGGTTAACATTCAAATCGAGGACGGGAGGGAGGGAGGGGGGGACGGAC
GGACAAGGTGGTGGACCGTCCCTGCAGCTTTGGCCGGATTCAAGCTCAAT
TGGATGGAGCTGAAACAAATACCGTTGAGGAGATACGTCGTGCCGATGGA
GGAAGGGGAGGGAGGGAGAGAGGCAGGGGCAGCATTTGATTTCGGGGTGC
TGGTGAAAGAGAGTGCGGTGGTAGCGTTGGCAAAGAAATTGCAGAAGGGA
CGATACAATGAGTATAGGAGAAAGGCCCGCAAGAGAGGATTGTGGGTTGA
GTGGGTGAAGGAGAGGTATCAAGAAGCAGTAGAGGAAGGGGCGGAGGGCG
GGGAGGGTGACGAACGGTTGGTGGACTGTGTGGAAGGGAGTGCATTCGGC
TGGCATCAGACGACGACGGATACGTATAATGCGAGTCGAAGCATGTCATC
GGTTTCGGATTTGGTGGGCGTGAAGTGGTGA
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Synonyms
Publications