jgi.p|Nanoce1779_2|577516, mRNA_506 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577516
Unique NamemRNA_506
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length894
Alignment locationscaffold_3:1226227..1227120 -

Link to JBrowse

Properties
Property NameValue
TranscriptId577602
TrackFilteredModels2
ProteinId577516
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1226227..1227120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577516gene_506Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577516mRNA_506-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_506CDS_506Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_506 ID=mRNA_506|Name=jgi.p|Nanoce1779_2|577516|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
AGAAAGGGAGGCATGAGTGGAAGGTTGAAGAGGTTCATCTCTCAATTGTT
TCGAGGGGCGAAGGAGGGAGTGAGGGAGGGAAGGAGGGAGGAGAGAGGAG
TATGACTAGATTAGTTTTGGATCAGTGCAGGATTACATTAAGTGGGGGGC
TTGTTGTGAGATTTATTGTTGTCACATTTCTTAGTTTAAATTTTGTTTGC
CTGTCTCTTTCTAGAGATCCCTGTATCTCTTTTTCTGTTTTTTTTGTGAT
GGTGGTGGTAGCACACATACGGACGATACGGAATCTGCCAGAGGCAAAGA
GGTGAACGGGGAGTTTTTTCCTCTTCAAATTGTTTGATTGCTTGCCTGTG
TTGTTGAGGCGTCAAGCGTGTGTGTGAGAGAGATGATGTTTGTCCGTCTG
GGTAGACAACTGTATGGCAAGGGGGAAGGAAAAACAGTATACATAGTCAT
TGCCGCAATTAATTAGAAAGAAGATTCAACGAGTTGAAGAATACGAGGCG
AAGAAGTGGGGGATAGGTGGAGAGAAAAAAGACTTCCTCAAACTAAATCA
AAAACAAGGAAATGAAACCAAGTGCAGAGGAGGGAGAAAGAGAGGCGAAA
GGGGGAGAAGGATCAGGAAGAAACGAAGTCGGTTCGATTTCTTTCTATGG
AAACTTGATGTCAGCTAGAGGAGGTAGAAGAGGAGGCAGGTGGGAGGAAG
TAAGGTCCGAAACAAGACCAAAAAGCAATACACGCCTGCAGTGGAAATGA
AACGTGCAAGTGGATCGGCGTGGAAAAGGAAAAGTGGCCAGTGTGTCATC
TCATTGTTAGAAAACAGAACCTGATGAGGACCTTGATGGATTTAGATCAT
TGCGGCCGCACATCAAAGAAATGAAGTGCTACACGGACAAGTCA
back to top

protein sequence of jgi.p|Nanoce1779_2|577516

>mRNA_506-protein ID=mRNA_506-protein|Name=jgi.p|Nanoce1779_2|577516|organism=Nannochloropsis oceanica|type=polypeptide|length=68bp
MTRLVLDQCRITLSGGLVVRFIVVTFLSLNFVCLSLSRDPCISFSVFFVM
VVVAHIRTIRNLPEAKR*
back to top

mRNA from alignment at scaffold_3:1226227..1227120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_506 ID=mRNA_506|Name=jgi.p|Nanoce1779_2|577516|organism=Nannochloropsis oceanica|type=mRNA|length=894bp|location=Sequence derived from alignment at scaffold_3:1226227..1227120- (Nannochloropsis oceanica)
AGAAAGGGAGGCATGAGTGGAAGGTTGAAGAGGTTCATCTCTCAATTGTT
TCGAGGGGCGAAGGAGGGAGTGAGGGAGGGAAGGAGGGAGGAGAGAGGAG
TATGACTAGATTAGTTTTGGATCAGTGCAGGATTACATTAAGTGGGGGGC
TTGTTGTGAGATTTATTGTTGTCACATTTCTTAGTTTAAATTTTGTTTGC
CTGTCTCTTTCTAGAGATCCCTGTATCTCTTTTTCTGTTTTTTTTGTGAT
GGTGGTGGTAGCACACATACGGACGATACGGAATCTGCCAGAGGCAAAGA
GGTGAACGGGGAGTTTTTTCCTCTTCAAATTGTTTGATTGCTTGCCTGTG
TTGTTGAGGCGTCAAGCGTGTGTGTGAGAGAGATGATGTTTGTCCGTCTG
GGTAGACAACTGTATGGCAAGGGGGAAGGAAAAACAGTATACATAGTCAT
TGCCGCAATTAATTAGAAAGAAGATTCAACGAGTTGAAGAATACGAGGCG
AAGAAGTGGGGGATAGGTGGAGAGAAAAAAGACTTCCTCAAACTAAATCA
AAAACAAGGAAATGAAACCAAGTGCAGAGGAGGGAGAAAGAGAGGCGAAA
GGGGGAGAAGGATCAGGAAGAAACGAAGTCGGTTCGATTTCTTTCTATGG
AAACTTGATGTCAGCTAGAGGAGGTAGAAGAGGAGGCAGGTGGGAGGAAG
TAAGGTCCGAAACAAGACCAAAAAGCAATACACGCCTGCAGTGGAAATGA
AACGTGCAAGTGGATCGGCGTGGAAAAGGAAAAGTGGCCAGTGTGTCATC
TCATTGTTAGAAAACAGAACCTGATGAGGACCTTGATGGATTTAGATCAT
TGCGGCCGCACATCAAAGAAATGAAGTGCTACACGGACAAGTCA
back to top

Coding sequence (CDS) from alignment at scaffold_3:1226227..1227120-

>mRNA_506 ID=mRNA_506|Name=jgi.p|Nanoce1779_2|577516|organism=Nannochloropsis oceanica|type=CDS|length=204bp|location=Sequence derived from alignment at scaffold_3:1226227..1227120- (Nannochloropsis oceanica)
ATGACTAGATTAGTTTTGGATCAGTGCAGGATTACATTAAGTGGGGGGCT
TGTTGTGAGATTTATTGTTGTCACATTTCTTAGTTTAAATTTTGTTTGCC
TGTCTCTTTCTAGAGATCCCTGTATCTCTTTTTCTGTTTTTTTTGTGATG
GTGGTGGTAGCACACATACGGACGATACGGAATCTGCCAGAGGCAAAGAG
GTGA
back to top
Synonyms
Publications