jgi.p|Nanoce1779_2|566324, mRNA_5059 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566324
Unique NamemRNA_5059
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1065
Alignment locationscaffold_12:351399..353396 -

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Properties
Property NameValue
TranscriptId566410
TrackFilteredModels2
ProteinId566324
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:351399..353396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566324gene_5059Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566324mRNA_5059-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5059CDS_5059Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5059 ID=mRNA_5059|Name=jgi.p|Nanoce1779_2|566324|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp
ATGCACCCTACTGACCGACCAGAGCTCCTAAAGTTTCTCCTCTCCGCCGT
GCAACAACACCAAGCAGAACAACCATTAGCGAGAGGCGGTGGGTTACCTC
TCTTAGGGTGTACCATCCGTTCCACGCGACATACAACATTGGCGAGCATT
CTCCGGGACTTGTACTTGCAGATTATGGCAGCCGTGGCCTCTATGCCGGT
CAAGGCACGAGGGCAACGGAAGGGCGCGCAGCGTTTCCGTGTCGCGGCGG
CCCCGCAAGGAACTTTGGGGGAGGTAATCTTGGCGTATCGGATGTTGGTG
GATGAGTTGTTGACTTTGCAGCAGAGCTCTTCGTCAGGAGCAGGAGTAGG
AGCACGAGCAGGAGGAACAGCGGCGGCAGCAGCACCTGTGGGAGTGAAGC
CATGCCCGTCGTTGCTCTTGATGTTTGAGGATGTGGAAGCGCTGAACAAT
CGACTATTGGAAGACTTGCTTCGTCTGTTGGCGGAGGCCTCGGAATCCTT
GCCTGCTCGGCTGGTTTTTCTGGTGTCGCCTGCTTTTTCCCTGGCACAGA
ATTTGGGGAATGGCGCGACGGCTACACTGGAACCGTCCACTTTCATCTTG
CCTCCCGCTCATGTGTGCTTCGAAAAGCTGCTCCAGCACCTCTTTCTGGA
CGTGAATCTGCCTGTGATGGTCTCCGGTCAGGTCCTCCGGTTTTTCCGGG
TCACGTTTTCGGATCTGCATTCGAGCATCATCACATTTATCCGACATCTT
GACTTTATGTTGCGGGTTCACTTCACTCAATTGATGTCATTGTTGTGCAT
GATGCCTTATGACCTTGTTTCGGAAGAAGAGGCGCCGTTAATGGGTGTAG
CTGCTGCTGTTAGTCCTGCTGGAGGAGGGGCGGAGAGAGGGGAGGAATCC
GTAGGGGAGGGCTCGCACTTGCAGGAGGACGACATGTTGATTCTGCTCGA
GATTCTGTTGGACCACGAGAGGCCGCAGCGGTGGGAGAAAATTGAAGCTT
CGTTGTGGGATGGGATGGCGGCATTATCTTTGGAAGGAGTGGAGAGCTTA
GTATTGGCGTGGTGA
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protein sequence of jgi.p|Nanoce1779_2|566324

>mRNA_5059-protein ID=mRNA_5059-protein|Name=jgi.p|Nanoce1779_2|566324|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MHPTDRPELLKFLLSAVQQHQAEQPLARGGGLPLLGCTIRSTRHTTLASI
LRDLYLQIMAAVASMPVKARGQRKGAQRFRVAAAPQGTLGEVILAYRMLV
DELLTLQQSSSSGAGVGARAGGTAAAAAPVGVKPCPSLLLMFEDVEALNN
RLLEDLLRLLAEASESLPARLVFLVSPAFSLAQNLGNGATATLEPSTFIL
PPAHVCFEKLLQHLFLDVNLPVMVSGQVLRFFRVTFSDLHSSIITFIRHL
DFMLRVHFTQLMSLLCMMPYDLVSEEEAPLMGVAAAVSPAGGGAERGEES
VGEGSHLQEDDMLILLEILLDHERPQRWEKIEASLWDGMAALSLEGVESL
VLAW*
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mRNA from alignment at scaffold_12:351399..353396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5059 ID=mRNA_5059|Name=jgi.p|Nanoce1779_2|566324|organism=Nannochloropsis oceanica|type=mRNA|length=1998bp|location=Sequence derived from alignment at scaffold_12:351399..353396- (Nannochloropsis oceanica)
ATGCACCCTACTGACCGACCAGAGCTCCTAAAGTTTCTCCTCTCCGCCGT
GCAACAACACCAAGCAGAACAACCATTAGCGAGAGGCGGTGGGTTACCTC
TCTTAGGGTGTACCATCCGTTCCACGCGACATACAACATTGGCGAGCATT
CTCCGGGACTTGTACTTGCAGATTATGGCAGCCGTGGCCTCTATGCCGGT
CAAGGCACGAGGGCAACGGAAGGGCGCGCAGCGTTTCCGTGTCGCGGCGG
CCCCGCAAGGAACTTTGGGGGAGGTAATCTTGGCGTATCGGATGTTGGTG
GATGAGTTGTTGACTTTGCAGCAGAGCTCTTCGTCAGGAGCAGGAGTAGG
AGCACGAGCAGGAGGAACAGCGGCGGCAGCAGCACCTGTGGGAGTGAAGC
CATGCCCGTCGTTGCTCTTGATGTTTGAGGATGTGGAAGCGCTGAACAAT
CGACTATTGGAAGACTTGCTTCGTCTGTTGGCGGAGGCCTCGGAATCCTT
GCCTGCTCGGCTGGTTTTTCTGGTGTCGCCTGCTTTTTCCCTGGCACAGA
ATTTGGGGAATGGCGCGACGGCTACACTGGAACCGTCCACTTTCATCTTG
CCTCCCGCTCATGTGTGCTTCGAAAAGGTACGTGACTGGTGCTCGAGGAA
ATATTGGTGTCTTGGATGTGATTCCGCGCATCGACACGTGAATTTGGATT
TTACGCATTACAGCCATTCGCTTACTCTCTCTTCCACTCCCCCTCCCTCT
CCCCCTCCCCTCTCCCCTTCCCTCCCTCACTCCGCCCTTCTAGCTGCTCC
AGCACCTCTTTCTGGACGTGAATCTGCCTGTGATGGTCTCCGGTCAGGTC
CTCCGGTTTTTCCGGGTCACGTTTTCGGATCTGCATTCGAGCATCATCAC
ATTTATCCGACATCTTGACTTTATGTTGCGGGTTCACTTCACTCAATTGA
TGTCATTGTTGTGCATGATGCCTTATGACCTTGTTTCGGAAGAAGAGGCG
CCGTTAATGGGTGTAGCTGCTGCTGTTAGTCCTGCTGGAGGAGGGGCGGA
GAGAGGGGAGGAATCCGTAGGGGAGGGCTCGCACTTGCAGGAGGACGGTA
GAAGAGGAGGAGGAGGAGGAGGGGGAAAGGAGAAAACGAATGGCAACGGT
AGCCACGTGACTCAAAGTCAAGCGCAGGTCTTAGTACTGACAAAAGCCGA
AGGAGGAATCAATGACTCCCACAATCTGATGGTGCTCCGACACCTGGAGA
CGCTCACCAAGAATCCAGCTCTTCGCGCTCTGCTTGCCAAGCTCATGTCG
CCCTCCGCCCTCTCTTCTGCTACTGCTACTGCTGGTGCAGCTGGTGCTGG
TGCTACTGCTGCTGCGGGTGCTGGTAGCGGCAACAGTGGCAGCAGTGGAG
AGAGTGTTGGTGGTGATTCGGCGTTCTCGATGGGAAGGGCAGATGATCGA
ACTCGGCATTTTCAGTGTTTGCGTATTTTGGTGCACCATCAGGTATGTGG
AGAGTGTCCGCTGGGTAGGGGAGCGGGGAACAGAAGAGAAGTTGGAAGAA
GGAGCGGGAAATACCTTGTCCCATTTTTAATGAGCTGCGCCTCCGGATAG
AGCCAACTAGACTCATCCTATCTCCCTTCATTCCTTCCTCTCGCTTTCTC
ACCCTCCTTTTTCTTCCTCTTTTCCCTGCACACCATCAGCTGGCTGGCCG
CTTCGAACTCCGTCTCGGCTGCCACCTAATCCATCAAGTCCTCCAAAGGT
GTCACAGCAGTAGCAGCAGCAGCAACAGCACCAATGATGATAGGACTATT
CGTAGCAGTAGCAATAGCAATAATAGCAAGAGCAAAAGCAATGGGGCCAG
TCCCCCTCCTATAGACATGTTGATTCTGCTCGAGATTCTGTTGGACCACG
AGAGGCCGCAGCGGTGGGAGAAAATTGAAGCTTCGTTGTGGGATGGGATG
GCGGCATTATCTTTGGAAGGAGTGGAGAGCTTAGTATTGGCGTGGTGA
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Coding sequence (CDS) from alignment at scaffold_12:351399..353396-

>mRNA_5059 ID=mRNA_5059|Name=jgi.p|Nanoce1779_2|566324|organism=Nannochloropsis oceanica|type=CDS|length=3195bp|location=Sequence derived from alignment at scaffold_12:351399..353396- (Nannochloropsis oceanica)
ACATGTTGATTCTGCTCGAGATTCTGTTGGACCACGAGAGGCCGCAGCGG
TGGGAGAAAATTGAAGCTTCGTTGTGGGATGGGATGGCGGCATTATCTTT
GGAAGGAGTGGAGAGCTTAGTATTGGCGTGGTGACTGCTCCAGCACCTCT
TTCTGGACGTGAATCTGCCTGTGATGGTCTCCGGTCAGGTCCTCCGGTTT
TTCCGGGTCACGTTTTCGGATCTGCATTCGAGCATCATCACATTTATCCG
ACATCTTGACTTTATGTTGCGGGTTCACTTCACTCAATTGATGTCATTGT
TGTGCATGATGCCTTATGACCTTGTTTCGGAAGAAGAGGCGCCGTTAATG
GGTGTAGCTGCTGCTGTTAGTCCTGCTGGAGGAGGGGCGGAGAGAGGGGA
GGAATCCGTAGGGGAGGGCTCGCACTTGCAGGAGGACGATGCACCCTACT
GACCGACCAGAGCTCCTAAAGTTTCTCCTCTCCGCCGTGCAACAACACCA
AGCAGAACAACCATTAGCGAGAGGCGGTGGGTTACCTCTCTTAGGGTGTA
CCATCCGTTCCACGCGACATACAACATTGGCGAGCATTCTCCGGGACTTG
TACTTGCAGATTATGGCAGCCGTGGCCTCTATGCCGGTCAAGGCACGAGG
GCAACGGAAGGGCGCGCAGCGTTTCCGTGTCGCGGCGGCCCCGCAAGGAA
CTTTGGGGGAGGTAATCTTGGCGTATCGGATGTTGGTGGATGAGTTGTTG
ACTTTGCAGCAGAGCTCTTCGTCAGGAGCAGGAGTAGGAGCACGAGCAGG
AGGAACAGCGGCGGCAGCAGCACCTGTGGGAGTGAAGCCATGCCCGTCGT
TGCTCTTGATGTTTGAGGATGTGGAAGCGCTGAACAATCGACTATTGGAA
GACTTGCTTCGTCTGTTGGCGGAGGCCTCGGAATCCTTGCCTGCTCGGCT
GGTTTTTCTGGTGTCGCCTGCTTTTTCCCTGGCACAGAATTTGGGGAATG
GCGCGACGGCTACACTGGAACCGTCCACTTTCATCTTGCCTCCCGCTCAT
GTGTGCTTCGAAAAGACATGTTGATTCTGCTCGAGATTCTGTTGGACCAC
GAGAGGCCGCAGCGGTGGGAGAAAATTGAAGCTTCGTTGTGGGATGGGAT
GGCGGCATTATCTTTGGAAGGAGTGGAGAGCTTAGTATTGGCGTGGTGAC
TGCTCCAGCACCTCTTTCTGGACGTGAATCTGCCTGTGATGGTCTCCGGT
CAGGTCCTCCGGTTTTTCCGGGTCACGTTTTCGGATCTGCATTCGAGCAT
CATCACATTTATCCGACATCTTGACTTTATGTTGCGGGTTCACTTCACTC
AATTGATGTCATTGTTGTGCATGATGCCTTATGACCTTGTTTCGGAAGAA
GAGGCGCCGTTAATGGGTGTAGCTGCTGCTGTTAGTCCTGCTGGAGGAGG
GGCGGAGAGAGGGGAGGAATCCGTAGGGGAGGGCTCGCACTTGCAGGAGG
ACGATGCACCCTACTGACCGACCAGAGCTCCTAAAGTTTCTCCTCTCCGC
CGTGCAACAACACCAAGCAGAACAACCATTAGCGAGAGGCGGTGGGTTAC
CTCTCTTAGGGTGTACCATCCGTTCCACGCGACATACAACATTGGCGAGC
ATTCTCCGGGACTTGTACTTGCAGATTATGGCAGCCGTGGCCTCTATGCC
GGTCAAGGCACGAGGGCAACGGAAGGGCGCGCAGCGTTTCCGTGTCGCGG
CGGCCCCGCAAGGAACTTTGGGGGAGGTAATCTTGGCGTATCGGATGTTG
GTGGATGAGTTGTTGACTTTGCAGCAGAGCTCTTCGTCAGGAGCAGGAGT
AGGAGCACGAGCAGGAGGAACAGCGGCGGCAGCAGCACCTGTGGGAGTGA
AGCCATGCCCGTCGTTGCTCTTGATGTTTGAGGATGTGGAAGCGCTGAAC
AATCGACTATTGGAAGACTTGCTTCGTCTGTTGGCGGAGGCCTCGGAATC
CTTGCCTGCTCGGCTGGTTTTTCTGGTGTCGCCTGCTTTTTCCCTGGCAC
AGAATTTGGGGAATGGCGCGACGGCTACACTGGAACCGTCCACTTTCATC
TTGCCTCCCGCTCATGTGTGCTTCGAAAAGACATGTTGATTCTGCTCGAG
ATTCTGTTGGACCACGAGAGGCCGCAGCGGTGGGAGAAAATTGAAGCTTC
GTTGTGGGATGGGATGGCGGCATTATCTTTGGAAGGAGTGGAGAGCTTAG
TATTGGCGTGGTGACTGCTCCAGCACCTCTTTCTGGACGTGAATCTGCCT
GTGATGGTCTCCGGTCAGGTCCTCCGGTTTTTCCGGGTCACGTTTTCGGA
TCTGCATTCGAGCATCATCACATTTATCCGACATCTTGACTTTATGTTGC
GGGTTCACTTCACTCAATTGATGTCATTGTTGTGCATGATGCCTTATGAC
CTTGTTTCGGAAGAAGAGGCGCCGTTAATGGGTGTAGCTGCTGCTGTTAG
TCCTGCTGGAGGAGGGGCGGAGAGAGGGGAGGAATCCGTAGGGGAGGGCT
CGCACTTGCAGGAGGACGATGCACCCTACTGACCGACCAGAGCTCCTAAA
GTTTCTCCTCTCCGCCGTGCAACAACACCAAGCAGAACAACCATTAGCGA
GAGGCGGTGGGTTACCTCTCTTAGGGTGTACCATCCGTTCCACGCGACAT
ACAACATTGGCGAGCATTCTCCGGGACTTGTACTTGCAGATTATGGCAGC
CGTGGCCTCTATGCCGGTCAAGGCACGAGGGCAACGGAAGGGCGCGCAGC
GTTTCCGTGTCGCGGCGGCCCCGCAAGGAACTTTGGGGGAGGTAATCTTG
GCGTATCGGATGTTGGTGGATGAGTTGTTGACTTTGCAGCAGAGCTCTTC
GTCAGGAGCAGGAGTAGGAGCACGAGCAGGAGGAACAGCGGCGGCAGCAG
CACCTGTGGGAGTGAAGCCATGCCCGTCGTTGCTCTTGATGTTTGAGGAT
GTGGAAGCGCTGAACAATCGACTATTGGAAGACTTGCTTCGTCTGTTGGC
GGAGGCCTCGGAATCCTTGCCTGCTCGGCTGGTTTTTCTGGTGTCGCCTG
CTTTTTCCCTGGCACAGAATTTGGGGAATGGCGCGACGGCTACACTGGAA
CCGTCCACTTTCATCTTGCCTCCCGCTCATGTGTGCTTCGAAAAG
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Synonyms
Publications