jgi.p|Nanoce1779_2|528964, mRNA_5057 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528964
Unique NamemRNA_5057
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length624
Alignment locationscaffold_12:349043..349666 -

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Properties
Property NameValue
TranscriptId529050
TrackFilteredModels2
ProteinId528964
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:349043..349666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528964gene_5057Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5057CDS_5057Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528964mRNA_5057-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5057 ID=mRNA_5057|Name=jgi.p|Nanoce1779_2|528964|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
ATGACAGAAAGCGACTTGGAGAAGACCACCAACCCAAGACCACCAGCATT
ATCGTCTTCGAGCACCTCGTTTCCTGCTGGAATTCCCGCCCAAATCATGG
AACGCGTCGGATTTAAAGACGTCGAGATCCGGTTGCCTGAGACATTCAGT
CCGCTCGAACGCGTGGCCCTCTCCGCCGAAGGGGATTTGCAGCGAATAAT
TAGTTCGTATTACAACGCTGCTGTGAGTGTGAGCATCAAACGCTGCAAGG
AAATTGAACCAGGGCTTTTCGATCGTGAAGTGGACTTGTCTGTGATGGGT
CGTGTGTTCTGCACGGCCACAAGTAGCCTGAGTCCAAAGACGCCGGAATG
TGCGCATTTATTGCGGGAGAAGAGTGTGGGCCTTGGGCAGCTCTTTCGGT
ATCTACGTGTGTACCCAACGTTTCGTTTATTGGACGTGGGAAGGGAGGAG
GGGGGGACAGGAAAGGAGGAAGGAGGAGGGGGGGTTTGGCGGTTGTATGA
ATTAGATTGTCCTGCGGTTATTAATTGTCGGATTCTTGAGAGGTTCGCGG
GAGATACTTTTCATAGGCGGCGACGACGTTGGTCGGTGGAGGTGGGGAAG
GATGGGGTGGAAGAAGAGGGATAG
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protein sequence of jgi.p|Nanoce1779_2|528964

>mRNA_5057-protein ID=mRNA_5057-protein|Name=jgi.p|Nanoce1779_2|528964|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MTESDLEKTTNPRPPALSSSSTSFPAGIPAQIMERVGFKDVEIRLPETFS
PLERVALSAEGDLQRIISSYYNAAVSVSIKRCKEIEPGLFDREVDLSVMG
RVFCTATSSLSPKTPECAHLLREKSVGLGQLFRYLRVYPTFRLLDVGREE
GGTGKEEGGGGVWRLYELDCPAVINCRILERFAGDTFHRRRRRWSVEVGK
DGVEEEG*
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mRNA from alignment at scaffold_12:349043..349666-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5057 ID=mRNA_5057|Name=jgi.p|Nanoce1779_2|528964|organism=Nannochloropsis oceanica|type=mRNA|length=624bp|location=Sequence derived from alignment at scaffold_12:349043..349666- (Nannochloropsis oceanica)
ATGACAGAAAGCGACTTGGAGAAGACCACCAACCCAAGACCACCAGCATT
ATCGTCTTCGAGCACCTCGTTTCCTGCTGGAATTCCCGCCCAAATCATGG
AACGCGTCGGATTTAAAGACGTCGAGATCCGGTTGCCTGAGACATTCAGT
CCGCTCGAACGCGTGGCCCTCTCCGCCGAAGGGGATTTGCAGCGAATAAT
TAGTTCGTATTACAACGCTGCTGTGAGTGTGAGCATCAAACGCTGCAAGG
AAATTGAACCAGGGCTTTTCGATCGTGAAGTGGACTTGTCTGTGATGGGT
CGTGTGTTCTGCACGGCCACAAGTAGCCTGAGTCCAAAGACGCCGGAATG
TGCGCATTTATTGCGGGAGAAGAGTGTGGGCCTTGGGCAGCTCTTTCGGT
ATCTACGTGTGTACCCAACGTTTCGTTTATTGGACGTGGGAAGGGAGGAG
GGGGGGACAGGAAAGGAGGAAGGAGGAGGGGGGGTTTGGCGGTTGTATGA
ATTAGATTGTCCTGCGGTTATTAATTGTCGGATTCTTGAGAGGTTCGCGG
GAGATACTTTTCATAGGCGGCGACGACGTTGGTCGGTGGAGGTGGGGAAG
GATGGGGTGGAAGAAGAGGGATAG
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Coding sequence (CDS) from alignment at scaffold_12:349043..349666-

>mRNA_5057 ID=mRNA_5057|Name=jgi.p|Nanoce1779_2|528964|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_12:349043..349666- (Nannochloropsis oceanica)
ATGACAGAAAGCGACTTGGAGAAGACCACCAACCCAAGACCACCAGCATT
ATCGTCTTCGAGCACCTCGTTTCCTGCTGGAATTCCCGCCCAAATCATGG
AACGCGTCGGATTTAAAGACGTCGAGATCCGGTTGCCTGAGACATTCAGT
CCGCTCGAACGCGTGGCCCTCTCCGCCGAAGGGGATTTGCAGCGAATAAT
TAGTTCGTATTACAACGCTGCTGTGAGTGTGAGCATCAAACGCTGCAAGG
AAATTGAACCAGGGCTTTTCGATCGTGAAGTGGACTTGTCTGTGATGGGT
CGTGTGTTCTGCACGGCCACAAGTAGCCTGAGTCCAAAGACGCCGGAATG
TGCGCATTTATTGCGGGAGAAGAGTGTGGGCCTTGGGCAGCTCTTTCGGT
ATCTACGTGTGTACCCAACGTTTCGTTTATTGGACGTGGGAAGGGAGGAG
GGGGGGACAGGAAAGGAGGAAGGAGGAGGGGGGGTTTGGCGGTTGTATGA
ATTAGATTGTCCTGCGGTTATTAATTGTCGGATTCTTGAGAGGTTCGCGG
GAGATACTTTTCATAGGCGGCGACGACGTTGGTCGGTGGAGGTGGGGAAG
GATGGGGTGGAAGAAGAGGGATAG
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Synonyms
Publications