jgi.p|Nanoce1779_2|591259, mRNA_5056 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591259
Unique NamemRNA_5056
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1354
Alignment locationscaffold_12:346737..348567 +

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Properties
Property NameValue
TranscriptId591345
TrackFilteredModels2
ProteinId591259
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:346737..348567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591259gene_5056Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591259mRNA_5056-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5056CDS_5056Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5056 ID=mRNA_5056|Name=jgi.p|Nanoce1779_2|591259|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp
GTTGCCGCTCCTCTTTGGTGCCTTCCCTCGCTGCCATTTGTGGGCTTGAT
TGCTGTGTTGGGCGGTCAGGTGTAATATTAACTCGGGGGTTGACGACGCC
TGAAGGCAAGTGTCCGCTTTCTTTGGTCATTGTCTTGCTGCGGGAAAGGA
CAAGCGATGCACATGCAAACGACAGAGTAGCACCATAGTAAGGGGTGCAA
TTTCCAATCTGATGTTGTGTCTGAATGGGACTCATCTGAAAATGAATCGG
GCAATGAATAAATTGTGCAGAGAAGGAGTACAGCGCGTCGCCGACTGAAT
CCACAAGATGACCTCCTTCCTTTCCTTGGACCGTACACCGTTAGTCTCTG
CGTTCTTGAATTGGTAACAACACATGCCACACTACAACCACCACTCCAAC
GACCCTGCACCCCTTTCCACAAAGGGCAAGGGCACGTTTTTTCAGGCGGT
TGCTTTCCATCTGTGTCGGCAACATAGTCTCTGGCGTCATCATGAGCGGC
CTCCTTTCCCTCGATGAAGACGAAGCCAAGCCCCAGGCCAAGATGTCCAA
GACAAAGAAACCCTCCAAGGAAGAGCGCAAGCTGGCCGCCGCCTTGGCCA
AGCTGGAGCTACCTACACAAGCGAGCGAGGATCTGGCGTTTCTCTATAGA
AAGACAACTGTGGCCCAAGCATTAGCGGAGGCATTGGAAGAGTTTTCGGA
GAAACAGGAGCTGCCCGAGCACGTGGTGGCCGAAACGATGGAGGTATTTG
ACAAGGCTATCCTGCAAGCCACGGAGGAAGCGCGGAATATGGGATGTCGG
GTCAAGGGAAGGGCGCAACTCGAGGCCTACAACAATGTCGACGAACACTG
GCGTTTCTTTTTCAAAGAGGGCGCCTCTTTGACGATCGAGCAGAATATGT
CTCTGAATCAGGACGAGGGAGGGGTGGGCGGCCCGCTGGAGGCACCCTGT
AGCGTGTTAGCTGTGGACGTGGCCAAAACTGTCAAAGGTGGAGGGCTTGT
GAAACATCGAGGTTTCAGATAACGGGATAATGCGAGAGGAAGGGAGGAAG
AAGAGGGTTTGTAAAGGGAATGTGTTATATAGCATATCGTGTACATGGCC
AAGATGCCGTGTCAATAGCCACCACACATCAATTAAAACCAAAATTTATG
AATTCATCACGCCAAACATTCGACACCGAGGCCCCACAGTTTCACTCGGG
AATAATCAAGAAACTCCATCAGTGACCACTCACACACACACACGACATGG
TATGAGGTTGTAAGGCATGCAGGTATGAAGTGAGGTTGTAAGGCATTCAA
GCATGAAGAGTTTGTGGGAGCACCACCAACAACAATCGAATAGTATCTTA
TCTC
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protein sequence of jgi.p|Nanoce1779_2|591259

>mRNA_5056-protein ID=mRNA_5056-protein|Name=jgi.p|Nanoce1779_2|591259|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MSGLLSLDEDEAKPQAKMSKTKKPSKEERKLAAALAKLELPTQASEDLAF
LYRKTTVAQALAEALEEFSEKQELPEHVVAETMEVFDKAILQATEEARNM
GCRVKGRAQLEAYNNVDEHWRFFFKEGASLTIEQNMSLNQDEGGVGGPLE
APCSVLAVDVAKTVKGGGLVKHRGFR*
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mRNA from alignment at scaffold_12:346737..348567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5056 ID=mRNA_5056|Name=jgi.p|Nanoce1779_2|591259|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at scaffold_12:346737..348567+ (Nannochloropsis oceanica)
GTTGCCGCTCCTCTTTGGTGCCTTCCCTCGCTGCCATTTGTGGGCTTGAT
TGCTGTGTTGGGCGGTCAGGTGTAATATTAACTCGGGGGTTGACGACGCC
TGAAGGCAAGTGTCCGCTTTCTTTGGTCATTGTCTTGCTGCGGGAAAGGA
CAAGCGATGCACATGCAAACGACAGAGTAGCACCATAGTAAGGGGTGCAA
TTTCCAATCTGATGTTGTGTCTGAATGGGACTCATCTGAAAATGAATCGG
GCAATGAATAAATTGTGCAGAGAAGGAGTACAGCGCGTCGCCGACTGAAT
CCACAAGATGACCTCCTTCCTTTCCTTGGACCGTACACCGTTAGTCTCTG
CGTTCTTGAATTGGTAACAACACATGCCACACTACAACCACCACTCCAAC
GACCCTGCACCCCTTTCCACAAAGGGCAAGGGCACGTTTTTTCAGGCGGT
TGCTTTCCATCTGTGTCGGCAACATAGTCTCTGGCGTCATCATGAGCGGC
CTCCTTTCCCTCGATGAAGACGAAGCCAAGCCCCAGGCCAAGATGTCCAA
GACAAAGAAACCCTCCAAGGAAGAGCGCAAGCTGGCCGCCGCCTTGGCCA
AGCTGGAGCTACCTACACAAGCGAGCGAGGATCTGGCGTTTCTCTATAGA
AAGACAACTGTGGCCCAAGCATTAGCGGAGGCATTGGAAGAGTTTTCGGA
GAAACAGGAGCTGCCCGAGCACGTGGTGGCCGAAACGATGGAGGTATTTG
ACAAGGTATAAGGATAAGGATATGGAAAGAGTTGTGGTTCTGGTGGCATT
TGAATGTGGGAGTCAAGGAAGGGACAAAAGAGGGAGAGATGAGCAGATGC
TGGTCCTTGTTGGCGGTGTTGTTGATGATTGTGGCTGTGCTCGGTGGGCT
TGATTTCATGTAAGAATAAAGTATAAGAAGTATAAAGATAATTCAATGCA
ACAATATGTCGTGGATCTCACGTAGGCTTTCATACGATCCCTTTCTCCAT
CGTTTAGGCTATCCTGCAAGCCACGGAGGAAGCGCGGAATATGGGATGTC
GGGTCAAGGGAAGGGTGAGTTTATAAAGATGCGACAAGGAGAAGGTTGAC
GTGTCTATGCCTTATAAGAGACTCGTATAGACTCCTCCCTAGTTATTGAC
TCGCGAAGTCCCAGCCTCAGTGGTTGAGTGGTGCTTGTGACTTTTCCTCC
TCGCACATTGTATATATCATTTTCAGCCCATGCTCACATCCACGCACCGT
TTCTCCATCCTCCCTCTCTTCTCTCCGGGCCACTTTCAGGCGCAACTCGA
GGCCTACAACAATGTCGACGAACACTGGCGTTTCTTTTTCAAAGAGGGCG
CCTCTTTGACGATCGAGCAGAATATGTCTCTGAATCAGGACGAGGGAGGG
GTGGGCGGCCCGCTGGAGGCACCCTGTAGCGTGTTAGCTGTGGACGTGGC
CAAAACTGTCAAAGGTGGAGGGCTTGTGAAACATCGAGGTTTCAGATAAC
GGGATAATGCGAGAGGAAGGGAGGAAGAAGAGGGTTTGTAAAGGGAATGT
GTTATATAGCATATCGTGTACATGGCCAAGATGCCGTGTCAATAGCCACC
ACACATCAATTAAAACCAAAATTTATGAATTCATCACGCCAAACATTCGA
CACCGAGGCCCCACAGTTTCACTCGGGAATAATCAAGAAACTCCATCAGT
GACCACTCACACACACACACGACATGGTATGAGGTTGTAAGGCATGCAGG
TATGAAGTGAGGTTGTAAGGCATTCAAGCATGAAGAGTTTGTGGGAGCAC
CACCAACAACAATCGAATAGTATCTTATCTC
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Coding sequence (CDS) from alignment at scaffold_12:346737..348567+

>mRNA_5056 ID=mRNA_5056|Name=jgi.p|Nanoce1779_2|591259|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at scaffold_12:346737..348567+ (Nannochloropsis oceanica)
ATGAGCGGCCTCCTTTCCCTCGATGAAGACGAAGCCAAGCCCCAGGCCAA
GATGTCCAAGACAAAGAAACCCTCCAAGGAAGAGCGCAAGCTGGCCGCCG
CCTTGGCCAAGCTGGAGCTACCTACACAAGCGAGCGAGGATCTGGCGTTT
CTCTATAGAAAGACAACTGTGGCCCAAGCATTAGCGGAGGCATTGGAAGA
GTTTTCGGAGAAACAGGAGCTGCCCGAGCACGTGGTGGCCGAAACGATGG
AGGTATTTGACAAGGCTATCCTGCAAGCCACGGAGGAAGCGCGGAATATG
GGATGTCGGGTCAAGGGAAGGGCGCAACTCGAGGCCTACAACAATGTCGA
CGAACACTGGCGTTTCTTTTTCAAAGAGGGCGCCTCTTTGACGATCGAGC
AGAATATGTCTCTGAATCAGGACGAGGGAGGGGTGGGCGGCCCGCTGGAG
GCACCCTGTAGCGTGTTAGCTGTGGACGTGGCCAAAACTGTCAAAGGTGG
AGGGCTTGTGAAACATCGAGGTTTCAGATAAATGAGCGGCCTCCTTTCCC
TCGATGAAGACGAAGCCAAGCCCCAGGCCAAGATGTCCAAGACAAAGAAA
CCCTCCAAGGAAGAGCGCAAGCTGGCCGCCGCCTTGGCCAAGCTGGAGCT
ACCTACACAAGCGAGCGAGGATCTGGCGTTTCTCTATAGAAAGACAACTG
TGGCCCAAGCATTAGCGGAGGCATTGGAAGAGTTTTCGGAGAAACAGGAG
CTGCCCGAGCACGTGGTGGCCGAAACGATGGAGGTATTTGACAAGGCTAT
CCTGCAAGCCACGGAGGAAGCGCGGAATATGGGATGTCGGGTCAAGGGAA
GGGCGCAACTCGAGGCCTACAACAATGTCGACGAACACTGGCGTTTCTTT
TTCAAAGAGGGCGCCTCTTTGACGATCGAGCAGAATATGTCTCTGAATCA
GGACGAGGGAGGGGTGGGCGGCCCGCTGGAGGCACCCTGTAGCGTGTTAG
CTGTGGACGTGGCCAAAACTGTCAAAGGTGGAGGGCTTGTGAAACATCGA
GGTTTCAGATAAATGAGCGGCCTCCTTTCCCTCGATGAAGACGAAGCCAA
GCCCCAGGCCAAGATGTCCAAGACAAAGAAACCCTCCAAGGAAGAGCGCA
AGCTGGCCGCCGCCTTGGCCAAGCTGGAGCTACCTACACAAGCGAGCGAG
GATCTGGCGTTTCTCTATAGAAAGACAACTGTGGCCCAAGCATTAGCGGA
GGCATTGGAAGAGTTTTCGGAGAAACAGGAGCTGCCCGAGCACGTGGTGG
CCGAAACGATGGAGGTATTTGACAAGGCTATCCTGCAAGCCACGGAGGAA
GCGCGGAATATGGGATGTCGGGTCAAGGGAAGGGCGCAACTCGAGGCCTA
CAACAATGTCGACGAACACTGGCGTTTCTTTTTCAAAGAGGGCGCCTCTT
TGACGATCGAGCAGAATATGTCTCTGAATCAGGACGAGGGAGGGGTGGGC
GGCCCGCTGGAGGCACCCTGTAGCGTGTTAGCTGTGGACGTGGCCAAAAC
TGTCAAAGGTGGAGGGCTTGTGAAACATCGAGGTTTCAGATAA
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Synonyms
Publications