jgi.p|Nanoce1779_2|591248, mRNA_5053 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591248
Unique NamemRNA_5053
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1400
Alignment locationscaffold_12:337772..339301 -

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Properties
Property NameValue
TranscriptId591334
TrackFilteredModels2
ProteinId591248
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:337772..339301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591248gene_5053Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591248mRNA_5053-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5053CDS_5053Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5053 ID=mRNA_5053|Name=jgi.p|Nanoce1779_2|591248|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp
AGGGCACGTGTCCTTCCATACATGCCTGGCCGTCTTCTCTACATCTTTCT
AACTCACACCGCTGCTGTCGTCTTCGCTTGCTGCATGCTATCTTTGCCTG
CTCGTGGAAGCGCCCGCTGCACGGCCACTGCTGCTGCCTTCCTTGGCGCA
TCGTCCTCCTCCCTCGCGCTCCCTCATTTCCGCCAAGATCACGGCCAGGA
CTCCCGTCGGTTCCTCTCATCCAGCACACCCATGCAGGCCGTCGCGGACC
TTCGGAAAGAATATTCGGCTTCGGGCCTGGAGGAGCATGAAGTGCCCTCC
GAACCTATGACCCTCTTTCGACGTTGGCTCGACGAGGCCGTCGCCGCGAA
AGTCGTCGAACCCAACGCCATGTGTTTGTCCACAGTCAGCGCGGATGGGA
AACCGTCGGGCCGGTATGTGTTGCTCAAGGGACTGGATGACCGAGGCTTT
GTCTGGTACACCAACTACCAATCGCGCAAAGGACAAGAGCTGGCAGCGGC
AGCTTTTCATGTGGACGGCGTCGATGCGCCAGCAGCAGGGCCACCAGCTT
GCTTGACTTTTTGGTGGGGAGATTTAGAACGATCCGTGAGGATAGAGGGC
ACCGTGGAGCGCGTGGCCGAGGCCGAGAGCCAAGCGTACTTCAATAGCCG
CCCCCGTGGGAGCCGGATCGGAGCGTGGGCCTCAAACCAAAGCCGTCCCA
TCGGATCCCGCGCCGCCTTGGAAGCGCAATACGAAGATGTGTGCGCGCGG
TTTGGGGGCGAAAAAGAGGAAGATAACGAGGGGCAGGTCCAGCCGGTCCC
AAAGCCTGAGCATTGGGGTGGTTTCCGATTGGTGCCGGAGAGAGTGGAGT
TTTGGAAGGGAAGGCAGTCGCGCTTGCACGATCGATTGGCATATGCGTTG
TTGCAGGAGGAGGGGAAAGCGGGTGGGAGGAAGTGGGCGCTGGAGAGGTT
GCAGCCCTGAGCGAGAGCTGGAAGAAGAAGAAGATGGGGTGGACGGCAGG
CCTTTTGGGGGCCTAGATCCAGGTAACTTTTTGTGCTTCCTGCCTGGTTG
CTCAACCCTCTTTGTTTGTTGTTTGAAATTTGAGGGGACAGGAAAGGGGA
GGGGAATGGGAGAAGCACCGAGAAGGCGGTAGGATATGTAATGGCGTTGT
GTGTAAAGAGCTAGAAACCAAGATGAATCGTGACGAAAATGGCATGAGAG
AAAAGTGAGTTCGCGTCTACCTCAGTTATCATTGCCGTATAGATTTTCGG
CTATGTGGGCTTTAAGTTACGTTCGTTCGGTCGACTTCACCTCTCCTCCT
TTCTCTTTTTCTTCCTGGTCTTTTCGTGCTGGAGAGGATGACGTATTTCG
AAAGAAATTTGTATACACACTGTACGTGGAGAAGCGTTTTCCTGTTGTCC
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protein sequence of jgi.p|Nanoce1779_2|591248

>mRNA_5053-protein ID=mRNA_5053-protein|Name=jgi.p|Nanoce1779_2|591248|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MPGRLLYIFLTHTAAVVFACCMLSLPARGSARCTATAAAFLGASSSSLAL
PHFRQDHGQDSRRFLSSSTPMQAVADLRKEYSASGLEEHEVPSEPMTLFR
RWLDEAVAAKVVEPNAMCLSTVSADGKPSGRYVLLKGLDDRGFVWYTNYQ
SRKGQELAAAAFHVDGVDAPAAGPPACLTFWWGDLERSVRIEGTVERVAE
AESQAYFNSRPRGSRIGAWASNQSRPIGSRAALEAQYEDVCARFGGEKEE
DNEGQVQPVPKPEHWGGFRLVPERVEFWKGRQSRLHDRLAYALLQEEGKA
GGRKWALERLQP*
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mRNA from alignment at scaffold_12:337772..339301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5053 ID=mRNA_5053|Name=jgi.p|Nanoce1779_2|591248|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp|location=Sequence derived from alignment at scaffold_12:337772..339301- (Nannochloropsis oceanica)
AGGGCACGTGTCCTTCCATACATGCCTGGCCGTCTTCTCTACATCTTTCT
AACTCACACCGCTGCTGTCGTCTTCGCTTGCTGCATGCTATCTTTGCCTG
CTCGTGGAAGCGCCCGCTGCACGGCCACTGCTGCTGCCTTCCTTGGCGCA
TCGTCCTCCTCCCTCGCGCTCCCTCATTTCCGCCAAGATCACGGCCAGGA
CTCCCGTCGGTTCCTCTCATCCAGCACACCCATGCAGGCCGTCGCGGACC
TTCGGAAAGAATATTCGGCTTCGGGCCTGGAGGAGCATGAAGTGCCCTCC
GAACCTATGACCCTCTTTCGACGTTGGCTCGACGAGGCCGTCGCCGCGAA
AGTCGTCGAACCCAACGCCATGTGTTTGTCCACAGTCAGCGCGGATGGGA
AACCGTCGGGCCGGTATGTGTTGCTCAAGGGACTGGATGACCGAGGCTTT
GTCTGGTACACCAACTACCAATCGCGCAAAGGACAAGAGCTGGCAGCGGC
AGCTTTTCATGTGGACGGCGTCGATGGTACGCCCCCTCCCATCCTTACGG
TGCTATATCCTGTCTAACCTTTGTCCCCTCACTGTGTATCTGACTTTTAA
CATCCAGTCGATAAAATCCTTTAATCTCACATCATTTTCTCCTCTCGCGA
AAACAGCGCCAGCAGCAGGGCCACCAGCTTGCTTGACTTTTTGGTGGGGA
GATTTAGAACGATCCGTGAGGATAGAGGGCACCGTGGAGCGCGTGGCCGA
GGCCGAGAGCCAAGCGTACTTCAATAGCCGCCCCCGTGGGAGCCGGATCG
GAGCGTGGGCCTCAAACCAAAGCCGTCCCATCGGATCCCGCGCCGCCTTG
GAAGCGCAATACGAAGATGTGTGCGCGCGGTTTGGGGGCGAAAAAGAGGA
AGATAACGAGGGGCAGGTCCAGCCGGTCCCAAAGCCTGAGCATTGGGGTG
GTTTCCGATTGGTGCCGGAGAGAGTGGAGTTTTGGAAGGGAAGGCAGTCG
CGCTTGCACGATCGATTGGCATATGCGTTGTTGCAGGAGGAGGGGAAAGC
GGGTGGGAGGAAGTGGGCGCTGGAGAGGTTGCAGCCCTGAGCGAGAGCTG
GAAGAAGAAGAAGATGGGGTGGACGGCAGGCCTTTTGGGGGCCTAGATCC
AGGTAACTTTTTGTGCTTCCTGCCTGGTTGCTCAACCCTCTTTGTTTGTT
GTTTGAAATTTGAGGGGACAGGAAAGGGGAGGGGAATGGGAGAAGCACCG
AGAAGGCGGTAGGATATGTAATGGCGTTGTGTGTAAAGAGCTAGAAACCA
AGATGAATCGTGACGAAAATGGCATGAGAGAAAAGTGAGTTCGCGTCTAC
CTCAGTTATCATTGCCGTATAGATTTTCGGCTATGTGGGCTTTAAGTTAC
GTTCGTTCGGTCGACTTCACCTCTCCTCCTTTCTCTTTTTCTTCCTGGTC
TTTTCGTGCTGGAGAGGATGACGTATTTCGAAAGAAATTTGTATACACAC
TGTACGTGGAGAAGCGTTTTCCTGTTGTCC
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Coding sequence (CDS) from alignment at scaffold_12:337772..339301-

>mRNA_5053 ID=mRNA_5053|Name=jgi.p|Nanoce1779_2|591248|organism=Nannochloropsis oceanica|type=CDS|length=1878bp|location=Sequence derived from alignment at scaffold_12:337772..339301- (Nannochloropsis oceanica)
CGCCAGCAGCAGGGCCACCAGCTTGCTTGACTTTTTGGTGGGGAGATTTA
GAACGATCCGTGAGGATAGAGGGCACCGTGGAGCGCGTGGCCGAGGCCGA
GAGCCAAGCGTACTTCAATAGCCGCCCCCGTGGGAGCCGGATCGGAGCGT
GGGCCTCAAACCAAAGCCGTCCCATCGGATCCCGCGCCGCCTTGGAAGCG
CAATACGAAGATGTGTGCGCGCGGTTTGGGGGCGAAAAAGAGGAAGATAA
CGAGGGGCAGGTCCAGCCGGTCCCAAAGCCTGAGCATTGGGGTGGTTTCC
GATTGGTGCCGGAGAGAGTGGAGTTTTGGAAGGGAAGGCAGTCGCGCTTG
CACGATCGATTGGCATATGCGTTGTTGCAGGAGGAGGGGAAAGCGGGTGG
GAGGAAGTGGGCGCTGGAGAGGTTGCAGCCCTGAATGCCTGGCCGTCTTC
TCTACATCTTTCTAACTCACACCGCTGCTGTCGTCTTCGCTTGCTGCATG
CTATCTTTGCCTGCTCGTGGAAGCGCCCGCTGCACGGCCACTGCTGCTGC
CTTCCTTGGCGCATCGTCCTCCTCCCTCGCGCTCCCTCATTTCCGCCAAG
ATCACGGCCAGGACTCCCGTCGGTTCCTCTCATCCAGCACACCCATGCAG
GCCGTCGCGGACCTTCGGAAAGAATATTCGGCTTCGGGCCTGGAGGAGCA
TGAAGTGCCCTCCGAACCTATGACCCTCTTTCGACGTTGGCTCGACGAGG
CCGTCGCCGCGAAAGTCGTCGAACCCAACGCCATGTGTTTGTCCACAGTC
AGCGCGGATGGGAAACCGTCGGGCCGGTATGTGTTGCTCAAGGGACTGGA
TGACCGAGGCTTTGTCTGGTACACCAACTACCAATCGCGCAAAGGACAAG
AGCTGGCAGCGGCAGCTTTTCATGTGGACGGCGTCGATGCGCCAGCAGCA
GGGCCACCAGCTTGCTTGACTTTTTGGTGGGGAGATTTAGAACGATCCGT
GAGGATAGAGGGCACCGTGGAGCGCGTGGCCGAGGCCGAGAGCCAAGCGT
ACTTCAATAGCCGCCCCCGTGGGAGCCGGATCGGAGCGTGGGCCTCAAAC
CAAAGCCGTCCCATCGGATCCCGCGCCGCCTTGGAAGCGCAATACGAAGA
TGTGTGCGCGCGGTTTGGGGGCGAAAAAGAGGAAGATAACGAGGGGCAGG
TCCAGCCGGTCCCAAAGCCTGAGCATTGGGGTGGTTTCCGATTGGTGCCG
GAGAGAGTGGAGTTTTGGAAGGGAAGGCAGTCGCGCTTGCACGATCGATT
GGCATATGCGTTGTTGCAGGAGGAGGGGAAAGCGGGTGGGAGGAAGTGGG
CGCTGGAGAGGTTGCAGCCCTGAATGCCTGGCCGTCTTCTCTACATCTTT
CTAACTCACACCGCTGCTGTCGTCTTCGCTTGCTGCATGCTATCTTTGCC
TGCTCGTGGAAGCGCCCGCTGCACGGCCACTGCTGCTGCCTTCCTTGGCG
CATCGTCCTCCTCCCTCGCGCTCCCTCATTTCCGCCAAGATCACGGCCAG
GACTCCCGTCGGTTCCTCTCATCCAGCACACCCATGCAGGCCGTCGCGGA
CCTTCGGAAAGAATATTCGGCTTCGGGCCTGGAGGAGCATGAAGTGCCCT
CCGAACCTATGACCCTCTTTCGACGTTGGCTCGACGAGGCCGTCGCCGCG
AAAGTCGTCGAACCCAACGCCATGTGTTTGTCCACAGTCAGCGCGGATGG
GAAACCGTCGGGCCGGTATGTGTTGCTCAAGGGACTGGATGACCGAGGCT
TTGTCTGGTACACCAACTACCAATCGCGCAAAGGACAAGAGCTGGCAGCG
GCAGCTTTTCATGTGGACGGCGTCGATG
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Synonyms
Publications