jgi.p|Nanoce1779_2|591245, mRNA_5052 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591245
Unique Name	mRNA_5052
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1400
Alignment location	scaffold_12:335927..337796 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591331
Track	FilteredModels2
ProteinId	591245

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:335927..337796 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591245	gene_5052	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591245	mRNA_5052-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5052	CDS_5052	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:335927..337796+
coding sequence from alignment at scaffold_12:335927..337796+

mRNA sequence

>mRNA_5052 ID=mRNA_5052|Name=jgi.p|Nanoce1779_2|591245|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp
CAGCAGTGTCTCAGTCGCCACCGCATGGAGACGGCTTGGGATAATCAGCA
CGGGGCCTATGTCACGTCGGATGCCCACGGGGGGCGGCTCTTCACGCGCT
CCTGGATTCCCAAAGATCGTGTGAAGCCCGCGGCCTGCATCTTCTTGGTG
CACGGCGTCAACGAGCACGTGGGCAGGTACGATGACATGGCCCACTCTCT
CACCCGCCAGGGCTATGCAGTCTTCGGCCACGATCAGTGGGGCCACGGAT
TGAGCGGGGGCTTTAAAGGCGACGTGGAAAATCTGAATTACCTTATCAAA
GACTTGAAGCAGCTCATCCGCGCTCAGCGACAATCCCACCCAGAAGTGCC
TTTCTTTATTGTCGCCCACTCCATGGGCACCATCGTCGGCTTCCACGCCG
CCTACGAACTCTCCATCGAATCCCCTTCTTTCCTCGACGGCATTATCTTC
TCCGGGTGTGCCCTTGTCCCCGGGCCCTCCGCCGCTTCCCCGTTCGGTCT
CCGTTGCCTCTTCGCATTGACCAAAAGCGAGTGGGCGTCCGGGGCCATTG
GAGGATTCATGGCCAAGATCGACCCGCGCGGGCCTTTGGCGCCTGTTATT
GAATCGGAACTGACGCGGGATTTGGTTGAAATAGACGTGATTAAAGACGA
TCCCTTGCACAACAGGGGGCCACTGCTTAACAGGACCGGAAATCAGATTC
TCTTAAAATGCCGAGAAATGAAGGAGCGACTGCCGCATTTCACCATGCCC
TTCCTAGCGATGCATGGGGCGGCAGACACGATCACCTTGCCGGAGGGGAC
TCAAATTTTGTTTGATCACGCGGGATCGACGGTGAAGACGTTGAAGTTTT
ACCCGGGGTTGTTCCACGAGCTATTCTTGGAGATCCCGGAAGCAAGGACG
ATGGTGTTGGGGGATGTGCATGCATTCTTGTCAGATATTGTGTACAAGAA
GAATGATAGCTTGTTGTTGCAGCAGCAGCAGGGGTTGGGAGGGGCACCGG
GAGCTGGTAAGGATGTGAAGGAGCAGACATGGGTGGAGAAAGGGAAGGAG
GGGAGGAGGGAGGTGGCGGAATGAGTGTGCGCGCAGAATATTGTGTAGCG
GCCTGTTTCTATACTATACTGGCGCCCTCCTTTCTTTTTAAAAAATGCCC
TCCCGAGGATGCATTTGAAATAAAGGAATCAAGTCTTAGCCAATGAAGAA
AAATTTAGTAGTTAGTGGAAGACATAGGTCAGTACTGTGAGTTGTGCATA
CGCCAAGGGGAAGATGGAGCGTGGGAGGGGTAGTGCAGGCGGGCAAGAAA
GACAGAGCTTGAGGGCTCACTCGGCTCAGGAGAATGAGTAGGGGAAAGGC
GACCTCTGGCGGGGAGGACGGGGGAGGACAACAGGAAAACGCTTCTCCAC

protein sequence of jgi.p|Nanoce1779_2|591245

>mRNA_5052-protein ID=mRNA_5052-protein|Name=jgi.p|Nanoce1779_2|591245|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
METAWDNQHGAYVTSDAHGGRLFTRSWIPKDRVKPAACIFLVHGVNEHVG
RYDDMAHSLTRQGYAVFGHDQWGHGLSGGFKGDVENLNYLIKDLKQLIRA
QRQSHPEVPFFIVAHSMGTIVGFHAAYELSIESPSFLDGIIFSGCALVPG
PSAASPFGLRCLFALTKSEWASGAIGGFMAKIDPRGPLAPVIESELTRDL
VEIDVIKDDPLHNRGPLLNRTGNQILLKCREMKERLPHFTMPFLAMHGAA
DTITLPEGTQILFDHAGSTVKTLKFYPGLFHELFLEIPEARTMVLGDVHA
FLSDIVYKKNDSLLLQQQQGLGGAPGAGKDVKEQTWVEKGKEGRREVAE*

mRNA from alignment at scaffold_12:335927..337796+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5052 ID=mRNA_5052|Name=jgi.p|Nanoce1779_2|591245|organism=Nannochloropsis oceanica|type=mRNA|length=1870bp|location=Sequence derived from alignment at scaffold_12:335927..337796+ (Nannochloropsis oceanica)
CAGCAGTGTCTCAGTCGCCACCGCATGGAGACGGCTTGGGATAATCAGCA
CGGGGCCTATGTCACGTCGGATGCCCACGGGGGGCGGCTCTTCACGCGGT
GCGTTGAAAGCAGGGAGGGATAGAGGGGCTAAGAGTGACAGCCTCTAGCG
AAATACCTTCTCCCTCCTTTCCTCTCACCCGTAATCTGCCATACAACCAA
TCCGTCCCATAGCTCCTGGATTCCCAAAGATCGTGTGAAGCCCGCGGCCT
GCATCTTCTTGGTGCACGGCGTCAACGAGCACGTGGGCAGGTACGATGAC
ATGGCCCACTCTCTCACCCGCCAGGGCTATGCAGGTAACGACAATGGTAG
GAAAGGGAGAAGATTTATGCTAGCATCTGCATAATTGTAATTTTTGTACC
TTTCTCTCCTAAAATGCATGACTTTATCTTCCCTTCCAACCTCCTCAACC
CCCCTTATCCATACTACCTCCCTCGTTTGTCCCAGTCTTCGGCCACGATC
AGTGGGGCCACGGATTGAGCGGGGGCTTTAAAGGCGACGTGGAAAATCTG
AATTACCTTATCAAAGACTTGAAGCAGCTCATCCGCGCTCAGCGACAATC
CCACCCAGAAGTGCCTTTCTTTATTGTCGGTACGTTTCTCTGAATATGGG
CAGGGAGCTTGCCAAGTTTCGACGGGTCAGCGAGGGAAAAGTGACAGTAA
AAGGAAGGGGAATAATGCTGGTGCATTGTGATCTATGGATCTAGCGTCTT
TGGAGGGATCTTCAAGGCCTTTTCTGTCGTGTAATTCATGACTGCGTGCT
AATCTCCGCCTTCCCCCCCTTCCCCCCCACCAAGCCCACTCCATGGGCAC
CATCGTCGGCTTCCACGCCGCCTACGAACTCTCCATCGAATCCCCTTCTT
TCCTCGACGGCATTATCTTCTCCGGGTGTGCCCTTGTCCCCGGGCCCTCC
GCCGCTTCCCCGTTCGGTCTCCGTTGCCTCTTCGCATTGACCAAAAGCGA
GTGGGCGTCCGGGGCCATTGGAGGATTCATGGCCAAGATCGACCCGCGCG
GGCCTTTGGCGCCTGTTATTGAATCGGAACTGACGCGGGATTTGGTTGAA
ATAGACGTGATTAAAGACGATCCCTTGCACAACAGGGGGCCACTGCTTAA
CAGGACCGGAAATCAGATTCTCTTAAAATGCCGAGAAATGAAGGAGCGAC
TGCCGCATTTCACCATGCCCTTCCTAGCGATGCATGGGGCGGCAGACACG
ATCACCTTGCCGGAGGGGACTCAAATTTTGTTTGATCACGCGGGATCGAC
GGTGAAGACGTTGAAGTTTTACCCGGGGTTGTTCCACGAGCTATTCTTGG
AGATCCCGGAAGCAAGGACGATGGTGTTGGGGGATGTGCATGCATTCTTG
TCAGATATTGTGTACAAGAAGAATGATAGCTTGTTGTTGCAGCAGCAGCA
GGGGTTGGGAGGGGCACCGGGAGCTGGTAAGGATGTGAAGGAGCAGACAT
GGGTGGAGAAAGGGAAGGAGGGGAGGAGGGAGGTGGCGGAATGAGTGTGC
GCGCAGAATATTGTGTAGCGGCCTGTTTCTATACTATACTGGCGCCCTCC
TTTCTTTTTAAAAAATGCCCTCCCGAGGATGCATTTGAAATAAAGGAATC
AAGTCTTAGCCAATGAAGAAAAATTTAGTAGTTAGTGGAAGACATAGGTC
AGTACTGTGAGTTGTGCATACGCCAAGGGGAAGATGGAGCGTGGGAGGGG
TAGTGCAGGCGGGCAAGAAAGACAGAGCTTGAGGGCTCACTCGGCTCAGG
AGAATGAGTAGGGGAAAGGCGACCTCTGGCGGGGAGGACGGGGGAGGACA
ACAGGAAAACGCTTCTCCAC

Coding sequence (CDS) from alignment at scaffold_12:335927..337796+

>mRNA_5052 ID=mRNA_5052|Name=jgi.p|Nanoce1779_2|591245|organism=Nannochloropsis oceanica|type=CDS|length=4200bp|location=Sequence derived from alignment at scaffold_12:335927..337796+ (Nannochloropsis oceanica)
ATGGAGACGGCTTGGGATAATCAGCACGGGGCCTATGTCACGTCGGATGC
CCACGGGGGGCGGCTCTTCACGCGCTCCTGGATTCCCAAAGATCGTGTGA
AGCCCGCGGCCTGCATCTTCTTGGTGCACGGCGTCAACGAGCACGTGGGC
AGGTACGATGACATGGCCCACTCTCTCACCCGCCAGGGCTATGCAGTCTT
CGGCCACGATCAGTGGGGCCACGGATTGAGCGGGGGCTTTAAAGGCGACG
TGGAAAATCTGAATTACCTTATCAAAGACTTGAAGCAGCTCATCCGCGCT
CAGCGACAATCCCACCCAGAAGTGCCTTTCTTTATTGTCGCCCACTCCAT
GGGCACCATCGTCGGCTTCCACGCCGCCTACGAACTCTCCATCGAATCCC
CTTCTTTCCTCGACGGCATTATCTTCTCCGGGTGTGCCCTTGTCCCCGGG
CCCTCCGCCGCTTCCCCGTTCGGTCTCCGTTGCCTCTTCGCATTGACCAA
AAGCGAGTGGGCGTCCGGGGCCATTGGAGGATTCATGGCCAAGATCGACC
CGCGCGGGCCTTTGGCGCCTGTTATTGAATCGGAACTGACGCGGGATTTG
GTTGAAATAGACGTGATTAAAGACGATCCCTTGCACAACAGGGGGCCACT
GCTTAACAGGACCGGAAATCAGATTCTCTTAAAATGCCGAGAAATGAAGG
AGCGACTGCCGCATTTCACCATGCCCTTCCTAGCGATGCATGGGGCGGCA
GACACGATCACCTTGCCGGAGGGGACTCAAATTTTGTTTGATCACGCGGG
ATCGACGGTGAAGACGTTGAAGTTTTACCCGGGGTTGTTCCACGAGCTAT
TCTTGGAGATCCCGGAAGCAAGGACGATGGTGTTGGGGGATGTGCATGCA
TTCTTGTCAGATATTGTGTACAAGAAGAATGATAGCTTGTTGTTGCAGCA
GCAGCAGGGGTTGGGAGGGGCACCGGGAGCTGGTAAGGATGTGAAGGAGC
AGACATGGGTGGAGAAAGGGAAGGAGGGGAGGAGGGAGGTGGCGGAATGA
ATGGAGACGGCTTGGGATAATCAGCACGGGGCCTATGTCACGTCGGATGC
CCACGGGGGGCGGCTCTTCACGCGCTCCTGGATTCCCAAAGATCGTGTGA
AGCCCGCGGCCTGCATCTTCTTGGTGCACGGCGTCAACGAGCACGTGGGC
AGGTACGATGACATGGCCCACTCTCTCACCCGCCAGGGCTATGCAGTCTT
CGGCCACGATCAGTGGGGCCACGGATTGAGCGGGGGCTTTAAAGGCGACG
TGGAAAATCTGAATTACCTTATCAAAGACTTGAAGCAGCTCATCCGCGCT
CAGCGACAATCCCACCCAGAAGTGCCTTTCTTTATTGTCGCCCACTCCAT
GGGCACCATCGTCGGCTTCCACGCCGCCTACGAACTCTCCATCGAATCCC
CTTCTTTCCTCGACGGCATTATCTTCTCCGGGTGTGCCCTTGTCCCCGGG
CCCTCCGCCGCTTCCCCGTTCGGTCTCCGTTGCCTCTTCGCATTGACCAA
AAGCGAGTGGGCGTCCGGGGCCATTGGAGGATTCATGGCCAAGATCGACC
CGCGCGGGCCTTTGGCGCCTGTTATTGAATCGGAACTGACGCGGGATTTG
GTTGAAATAGACGTGATTAAAGACGATCCCTTGCACAACAGGGGGCCACT
GCTTAACAGGACCGGAAATCAGATTCTCTTAAAATGCCGAGAAATGAAGG
AGCGACTGCCGCATTTCACCATGCCCTTCCTAGCGATGCATGGGGCGGCA
GACACGATCACCTTGCCGGAGGGGACTCAAATTTTGTTTGATCACGCGGG
ATCGACGGTGAAGACGTTGAAGTTTTACCCGGGGTTGTTCCACGAGCTAT
TCTTGGAGATCCCGGAAGCAAGGACGATGGTGTTGGGGGATGTGCATGCA
TTCTTGTCAGATATTGTGTACAAGAAGAATGATAGCTTGTTGTTGCAGCA
GCAGCAGGGGTTGGGAGGGGCACCGGGAGCTGGTAAGGATGTGAAGGAGC
AGACATGGGTGGAGAAAGGGAAGGAGGGGAGGAGGGAGGTGGCGGAATGA
ATGGAGACGGCTTGGGATAATCAGCACGGGGCCTATGTCACGTCGGATGC
CCACGGGGGGCGGCTCTTCACGCGCTCCTGGATTCCCAAAGATCGTGTGA
AGCCCGCGGCCTGCATCTTCTTGGTGCACGGCGTCAACGAGCACGTGGGC
AGGTACGATGACATGGCCCACTCTCTCACCCGCCAGGGCTATGCAGTCTT
CGGCCACGATCAGTGGGGCCACGGATTGAGCGGGGGCTTTAAAGGCGACG
TGGAAAATCTGAATTACCTTATCAAAGACTTGAAGCAGCTCATCCGCGCT
CAGCGACAATCCCACCCAGAAGTGCCTTTCTTTATTGTCGCCCACTCCAT
GGGCACCATCGTCGGCTTCCACGCCGCCTACGAACTCTCCATCGAATCCC
CTTCTTTCCTCGACGGCATTATCTTCTCCGGGTGTGCCCTTGTCCCCGGG
CCCTCCGCCGCTTCCCCGTTCGGTCTCCGTTGCCTCTTCGCATTGACCAA
AAGCGAGTGGGCGTCCGGGGCCATTGGAGGATTCATGGCCAAGATCGACC
CGCGCGGGCCTTTGGCGCCTGTTATTGAATCGGAACTGACGCGGGATTTG
GTTGAAATAGACGTGATTAAAGACGATCCCTTGCACAACAGGGGGCCACT
GCTTAACAGGACCGGAAATCAGATTCTCTTAAAATGCCGAGAAATGAAGG
AGCGACTGCCGCATTTCACCATGCCCTTCCTAGCGATGCATGGGGCGGCA
GACACGATCACCTTGCCGGAGGGGACTCAAATTTTGTTTGATCACGCGGG
ATCGACGGTGAAGACGTTGAAGTTTTACCCGGGGTTGTTCCACGAGCTAT
TCTTGGAGATCCCGGAAGCAAGGACGATGGTGTTGGGGGATGTGCATGCA
TTCTTGTCAGATATTGTGTACAAGAAGAATGATAGCTTGTTGTTGCAGCA
GCAGCAGGGGTTGGGAGGGGCACCGGGAGCTGGTAAGGATGTGAAGGAGC
AGACATGGGTGGAGAAAGGGAAGGAGGGGAGGAGGGAGGTGGCGGAATGA
ATGGAGACGGCTTGGGATAATCAGCACGGGGCCTATGTCACGTCGGATGC
CCACGGGGGGCGGCTCTTCACGCGCTCCTGGATTCCCAAAGATCGTGTGA
AGCCCGCGGCCTGCATCTTCTTGGTGCACGGCGTCAACGAGCACGTGGGC
AGGTACGATGACATGGCCCACTCTCTCACCCGCCAGGGCTATGCAGTCTT
CGGCCACGATCAGTGGGGCCACGGATTGAGCGGGGGCTTTAAAGGCGACG
TGGAAAATCTGAATTACCTTATCAAAGACTTGAAGCAGCTCATCCGCGCT
CAGCGACAATCCCACCCAGAAGTGCCTTTCTTTATTGTCGCCCACTCCAT
GGGCACCATCGTCGGCTTCCACGCCGCCTACGAACTCTCCATCGAATCCC
CTTCTTTCCTCGACGGCATTATCTTCTCCGGGTGTGCCCTTGTCCCCGGG
CCCTCCGCCGCTTCCCCGTTCGGTCTCCGTTGCCTCTTCGCATTGACCAA
AAGCGAGTGGGCGTCCGGGGCCATTGGAGGATTCATGGCCAAGATCGACC
CGCGCGGGCCTTTGGCGCCTGTTATTGAATCGGAACTGACGCGGGATTTG
GTTGAAATAGACGTGATTAAAGACGATCCCTTGCACAACAGGGGGCCACT
GCTTAACAGGACCGGAAATCAGATTCTCTTAAAATGCCGAGAAATGAAGG
AGCGACTGCCGCATTTCACCATGCCCTTCCTAGCGATGCATGGGGCGGCA
GACACGATCACCTTGCCGGAGGGGACTCAAATTTTGTTTGATCACGCGGG
ATCGACGGTGAAGACGTTGAAGTTTTACCCGGGGTTGTTCCACGAGCTAT
TCTTGGAGATCCCGGAAGCAAGGACGATGGTGTTGGGGGATGTGCATGCA
TTCTTGTCAGATATTGTGTACAAGAAGAATGATAGCTTGTTGTTGCAGCA
GCAGCAGGGGTTGGGAGGGGCACCGGGAGCTGGTAAGGATGTGAAGGAGC
AGACATGGGTGGAGAAAGGGAAGGAGGGGAGGAGGGAGGTGGCGGAATGA

Synonyms

Publications