jgi.p|Nanoce1779_2|566317, mRNA_5050 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|566317
Unique Name	mRNA_5050
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1125
Alignment location	scaffold_12:331233..332495 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	566403
Track	FilteredModels2
ProteinId	566317

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:331233..332495 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|566317	gene_5050	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|566317	mRNA_5050-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5050	CDS_5050	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:331233..332495+
coding sequence from alignment at scaffold_12:331233..332495+

mRNA sequence

>mRNA_5050 ID=mRNA_5050|Name=jgi.p|Nanoce1779_2|566317|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
ATGCCGCTACCCGCCGCCTTCCTCCTTTTTATCGCATCACTGGTACTCCT
CGCTGGGCCCGGCCACGCATACCGACCACCCCATCAGCCATTCCATCAGC
AGCAGCACCACCGCAAAGATGCCCTTCAACGCACGACAGGAGCTGCCGCT
GCGACTGCCGCTGCATTTTTTGGCCCCTCGATATTTATACCACAGCCCTC
AGCGGCAGTCGACACAGCCGAAGTCGGTAGCCAGGTCCCCCCTCCTCCTA
TCCAACCCCAAAGCAAGCTTCTTCAAAAGTTCCTCACCACAGATCTGACC
AGTCCGGGCCTTTCTGGTTTTGGTGGTGCCAAAATTCTGTTCCCACCGCC
GTTTTTGTTCGGGACCTGGAATGCCACCCTCTGCCTGAAGAGCATCGATC
TCCCCCTTGGAGAGCGCTTTGTGCCCCCCCAAGTTCTCCGCTCCCTCAAC
GCCGTAGAAATGGAAAAGCCAACGTCGTTCCTACTCCGGTTCTACTCCAC
CCTGCCGGACACGACCGAGAACACTTTGCGTGTCACTTTGGGGGAAGTGC
CTAAATCGGAAGTTGTCCCTGATCGCGTTTACAACACACGTTCCGTCCTC
GATGCGTTCTACGGGTACCCAGCCGTGGGTGAAATTGATTACGACTTGGC
AAGAAATCCTTTGAAAATGGACGTGGCTTTCGCGACGATGGGTCCAGATA
TGAAGCCATTACCTTCTAGGAGACAGCAATTGTTGTTTAATAACCTGCAG
AGCGAACGGGTGCGACCTGATGACTTATTTGTCTGTTCTGAGTACGTCCG
CACGGTCACGGTGGGACCGGGAAGAAGAGTAACGGTGACAGATTCAGAAA
CATTGTCGCAGTATGAGTTGGTGAAAGAGGGGAGGATAGAGGGCAAGCAA
CGCGTGGCGCTTTATTTGACACCCAATCCCAACACTGCGGAAGGAGCCTT
GTTTTTTGAGACGAACAATAAGGCAGTTACAATTTTTGACTACTCGTTCG
TGATGCAAAAGGTGGGAGACTGTGTGCTGACTCCCAAAGGAGTGGAGCAA
TGCGTTGGGTCGGATGGAGGGGGAGGGTATATTAAAGAACCAGTGCAGAC
AGAGGGGGAGGGGGGCGAGTTGTAG

protein sequence of jgi.p|Nanoce1779_2|566317

>mRNA_5050-protein ID=mRNA_5050-protein|Name=jgi.p|Nanoce1779_2|566317|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MPLPAAFLLFIASLVLLAGPGHAYRPPHQPFHQQQHHRKDALQRTTGAAA
ATAAAFFGPSIFIPQPSAAVDTAEVGSQVPPPPIQPQSKLLQKFLTTDLT
SPGLSGFGGAKILFPPPFLFGTWNATLCLKSIDLPLGERFVPPQVLRSLN
AVEMEKPTSFLLRFYSTLPDTTENTLRVTLGEVPKSEVVPDRVYNTRSVL
DAFYGYPAVGEIDYDLARNPLKMDVAFATMGPDMKPLPSRRQQLLFNNLQ
SERVRPDDLFVCSEYVRTVTVGPGRRVTVTDSETLSQYELVKEGRIEGKQ
RVALYLTPNPNTAEGALFFETNNKAVTIFDYSFVMQKVGDCVLTPKGVEQ
CVGSDGGGGYIKEPVQTEGEGGEL*

mRNA from alignment at scaffold_12:331233..332495+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5050 ID=mRNA_5050|Name=jgi.p|Nanoce1779_2|566317|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp|location=Sequence derived from alignment at scaffold_12:331233..332495+ (Nannochloropsis oceanica)
ATGCCGCTACCCGCCGCCTTCCTCCTTTTTATCGCATCACTGGTACTCCT
CGCTGGGCCCGGCCACGCATACCGACCACCCCATCAGCCATTCCATCAGC
AGCAGCACCACCGCAAAGATGCCCTTCAACGCACGACAGGAGCTGCCGCT
GCGACTGCCGCTGCATTTTTTGGCCCCTCGATATTTATACCACAGCCCTC
AGCGGCAGTCGACACAGCCGAAGTCGGTAGCCAGGTCCCCCCTCCTCCTA
TCCAACCCCAAAGCAAGCTTCTTCAAAAGTTCCTCACCACAGATCTGACC
AGTCCGGGCCTTTCTGGTTTTGGTGGTGCCAAAATTCTGTTCCCACCGCC
GTTTTTGTTCGGGACCTGGAATGCCACCCTCTGCCTGAAGAGCATCGATC
TCCCCCTTGGAGAGCGCTTTGTGCCCCCCCAAGTTCTCCGCTCCCTCAAC
GCCGTAGAAATGGAAAAGCCAACGTCGTTCCTACTCCGGTTCTACTCCAC
CCTGCCGGACACGACCGAGAACACTTTGCGTGTCACTTTGGGGGAAGTGC
CTAAATCGGAAGTTGTCCCTGATCGCGTTTACAACACACGTTCCGTCCTC
GATGCGTTCTACGGGTACCCAGCCGTGGGTGAAATTGATTACGACTTGGC
AAGAAATCCTTTGAAAATGGACGTGGCTTTCGCGACGATGGGTCCAGATA
TGAAGCCATTACCTTCTAGGAGACAGCAATTGTTGTTTAATAACCTGCAG
AGCGAACGGGTGCGACCTGATGACTTATTTGTCTGTTCTGAGTACGTCCG
CACGGTCACGGTGGGACCGGGAAGAAGAGTAACGGTGACAGATTCAGAAA
CATTGTCGCAGTATGAGTTGGTGAAAGAGGGGAGGATAGAGGGCAAGCAA
CGCGTGGCGCTTTATTTGACACCCAATCCCAACACTGCGGAAGGAGCCTT
GTTTTTTGAGACGAACAATAAGGTTTGTGTTTCTCTCTCCCTCCCTTTCC
CTCTGTCTCCCCTCTTGTCGATCTCTCCCTCCTCTATATTTCTCTTTCTT
TTTCTTTCCTCTTTTCCCCGCGCTTATGTACCTCCTCCCCTCCCTTACTC
TCTCCCACAGGCAGTTACAATTTTTGACTACTCGTTCGTGATGCAAAAGG
TGGGAGACTGTGTGCTGACTCCCAAAGGAGTGGAGCAATGCGTTGGGTCG
GATGGAGGGGGAGGGTATATTAAAGAACCAGTGCAGACAGAGGGGGAGGG
GGGCGAGTTGTAG

Coding sequence (CDS) from alignment at scaffold_12:331233..332495+

>mRNA_5050 ID=mRNA_5050|Name=jgi.p|Nanoce1779_2|566317|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at scaffold_12:331233..332495+ (Nannochloropsis oceanica)
ATGCCGCTACCCGCCGCCTTCCTCCTTTTTATCGCATCACTGGTACTCCT
CGCTGGGCCCGGCCACGCATACCGACCACCCCATCAGCCATTCCATCAGC
AGCAGCACCACCGCAAAGATGCCCTTCAACGCACGACAGGAGCTGCCGCT
GCGACTGCCGCTGCATTTTTTGGCCCCTCGATATTTATACCACAGCCCTC
AGCGGCAGTCGACACAGCCGAAGTCGGTAGCCAGGTCCCCCCTCCTCCTA
TCCAACCCCAAAGCAAGCTTCTTCAAAAGTTCCTCACCACAGATCTGACC
AGTCCGGGCCTTTCTGGTTTTGGTGGTGCCAAAATTCTGTTCCCACCGCC
GTTTTTGTTCGGGACCTGGAATGCCACCCTCTGCCTGAAGAGCATCGATC
TCCCCCTTGGAGAGCGCTTTGTGCCCCCCCAAGTTCTCCGCTCCCTCAAC
GCCGTAGAAATGGAAAAGCCAACGTCGTTCCTACTCCGGTTCTACTCCAC
CCTGCCGGACACGACCGAGAACACTTTGCGTGTCACTTTGGGGGAAGTGC
CTAAATCGGAAGTTGTCCCTGATCGCGTTTACAACACACGTTCCGTCCTC
GATGCGTTCTACGGGTACCCAGCCGTGGGTGAAATTGATTACGACTTGGC
AAGAAATCCTTTGAAAATGGACGTGGCTTTCGCGACGATGGGTCCAGATA
TGAAGCCATTACCTTCTAGGAGACAGCAATTGTTGTTTAATAACCTGCAG
AGCGAACGGGTGCGACCTGATGACTTATTTGTCTGTTCTGAGTACGTCCG
CACGGTCACGGTGGGACCGGGAAGAAGAGTAACGGTGACAGATTCAGAAA
CATTGTCGCAGTATGAGTTGGTGAAAGAGGGGAGGATAGAGGGCAAGCAA
CGCGTGGCGCTTTATTTGACACCCAATCCCAACACTGCGGAAGGAGCCTT
GTTTTTTGAGACGAACAATAAGGCAGTTACAATTTTTGACTACTCGTTCG
TGATGCAAAAGGTGGGAGACTGTGTGCTGACTCCCAAAGGAGTGGAGCAA
TGCGTTGGGTCGGATGGAGGGGGAGGGTATATTAAAGAACCAGTGCAGAC
AGAGGGGGAGGGGGGCGAGTTGTAGATGCCGCTACCCGCCGCCTTCCTCC
TTTTTATCGCATCACTGGTACTCCTCGCTGGGCCCGGCCACGCATACCGA
CCACCCCATCAGCCATTCCATCAGCAGCAGCACCACCGCAAAGATGCCCT
TCAACGCACGACAGGAGCTGCCGCTGCGACTGCCGCTGCATTTTTTGGCC
CCTCGATATTTATACCACAGCCCTCAGCGGCAGTCGACACAGCCGAAGTC
GGTAGCCAGGTCCCCCCTCCTCCTATCCAACCCCAAAGCAAGCTTCTTCA
AAAGTTCCTCACCACAGATCTGACCAGTCCGGGCCTTTCTGGTTTTGGTG
GTGCCAAAATTCTGTTCCCACCGCCGTTTTTGTTCGGGACCTGGAATGCC
ACCCTCTGCCTGAAGAGCATCGATCTCCCCCTTGGAGAGCGCTTTGTGCC
CCCCCAAGTTCTCCGCTCCCTCAACGCCGTAGAAATGGAAAAGCCAACGT
CGTTCCTACTCCGGTTCTACTCCACCCTGCCGGACACGACCGAGAACACT
TTGCGTGTCACTTTGGGGGAAGTGCCTAAATCGGAAGTTGTCCCTGATCG
CGTTTACAACACACGTTCCGTCCTCGATGCGTTCTACGGGTACCCAGCCG
TGGGTGAAATTGATTACGACTTGGCAAGAAATCCTTTGAAAATGGACGTG
GCTTTCGCGACGATGGGTCCAGATATGAAGCCATTACCTTCTAGGAGACA
GCAATTGTTGTTTAATAACCTGCAGAGCGAACGGGTGCGACCTGATGACT
TATTTGTCTGTTCTGAGTACGTCCGCACGGTCACGGTGGGACCGGGAAGA
AGAGTAACGGTGACAGATTCAGAAACATTGTCGCAGTATGAGTTGGTGAA
AGAGGGGAGGATAGAGGGCAAGCAACGCGTGGCGCTTTATTTGACACCCA
ATCCCAACACTGCGGAAGGAGCCTTGTTTTTTGAGACGAACAATAAGGCA
GTTACAATTTTTGACTACTCGTTCGTGATGCAAAAGGTGGGAGACTGTGT
GCTGACTCCCAAAGGAGTGGAGCAATGCGTTGGGTCGGATGGAGGGGGAG
GGTATATTAAAGAACCAGTGCAGACAGAGGGGGAGGGGGGCGAGTTGTAG

Synonyms

Publications