jgi.p|Nanoce1779_2|591233, mRNA_5049 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591233
Unique NamemRNA_5049
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2347
Alignment locationscaffold_12:327109..329577 -

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Properties
Property NameValue
TranscriptId591319
TrackFilteredModels2
ProteinId591233
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:327109..329577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591233gene_5049Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591233mRNA_5049-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5049CDS_5049Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5049 ID=mRNA_5049|Name=jgi.p|Nanoce1779_2|591233|organism=Nannochloropsis oceanica|type=mRNA|length=2347bp
AGGCGATATATTTAGGCGAGTGGGGGAGCTCGATGCAGATCACATGACTC
AGCGACTGTCTTCTAGATGCTTGCTGATTACATGTACGAGGAGTGGAGGA
AGGCACGTGTTGGGGCCTTTTACCGCCCCTCTCCTCCCGCAAGGTGGAAG
GAGATGCCAGCTCAGACAGCTCAGTGAAACGCTCTTTTATGTGGCTGGTG
GGCTCCTTGACAAGATCTGGAAGGCGGCACGCCGAAAGGAAGGGGAGGAA
GGGGATTGCGCGAGGCGGCGTCATCGCAAGCATTAGATTGGGGAGAATCA
CTCCCGGAGGCTTGGCCCTTTCTTCGAGAGGGTGGCTGCTACAAGCCAGA
AAGGAGTCATGTTTTCCTCTCCGTTATGGTATGCGTATTTTACTTGTATG
GAGGTGGTTTTGATGAACCTCATTTCTATTGATTTTTTAATCCACGTGGG
GCAGGATGTTGAGAAGGGTGGGATGTGGACTGCAGCGCTTGAGAAGATCT
GCATGGATGAGGGGGTGACAAATGCATGGAAAGCTCGCATGCAGAAGATA
TTAGCATACCGTGTAGACGTACCTGCAGATGCGGTTGAAGGATGGTGCCG
GCTCCATCCTTGCATCTCTCCTCCTGCGTCTCGGAAATTCGATCCGCCCC
GGCCTCCGCACTATCGGCAAGATAGCGAAAGAGCGTGCGGAGAAGGAGAA
GAGGGCGAGTCGAATGTCCATCTCGAGGTTTTTACCCGTAGAGGGCACGG
CCGTCGAGTACGCATGTTTACTCACGAGTCACTATGCCACCTTGGTGGCA
AATATTCTCACGATGGATCTGGCAAATGTGCGTGGAGTAGCATCTGAATT
AGGTTTGCATTTAGCCACAGGTACGATACATGAGGGATGGCGGGAAAGGC
GTCCCGAAGATAAAACCACCTTGGAGGATTTGATAGACCTTGAGAGCACC
GTGCCGTGTGCGCCACTTCTCAAGGGGGGCCTAAAGCCGTCCTTTCAAAT
TAAAAATTTAGGGGATTTTGATGGAAAGATTGGAGGGAGGGTGCGAGTGT
ATCTTCGACGGGGCCGGATCACTTGATCCCATCAGTTGCAAACGCTGGAT
TGTTGCCTTCCAGAGACGGCTTCAGAAAACAAGGGGTGCGAGCAGTTAGC
TCGAAATCAATGCAGAGGATACCGCATTGCATGGTAGTTGTAGTCGAAAT
ATTGAGTGGGAACCTTTTGGGGTGGGCATGCGCCAAACGGAATTCGACAG
CTGCGCCAAAGAGGGGGGGCGAATGGAATGCGGGTGCAATGGCGCGGGAC
GGAAATGGAACTGCTTATCGCCATGCCGTACAAAAGACAAGCGGTCGCGC
CTGTGCTAGCTACTGGACACGACTCCTGAACTTTCAGCTGTATACTCGTC
ATACGTTGAACCACAGCTGAAGTGCGTGTATTTAATTTTGAACGATGAGG
GTAAAACGCTGACGTTGGTCCGCTTCCAGCGGAGTAGTATCGAGGATGTC
GCCTTCTCACACGCATGTCTGTGGGGACTGTTATGGAGTGAAGGTCCATT
CCACGGCGGATTCGGGCTCTCAATGCGGCTCTCGTGGGCAGTGTCGTCGA
GAAAACCGTGGACGCACACGAGGAACTGGAGGCCGTGGAAGCTGAGGAAG
CAAGATGCCGCTCCCTCCACCTATGTCGAGGTTATCATTGGTCGACTGGC
CTTTTAGTAATTACAAGCTTCGAGATATCTACTGCGATGCCCGTTTAGAC
TGTCGGAGTCGTCAAACGCTTGCTGTAGACTTTGTCAAGAAGATGACAGG
ATTGTCGCCAAAAACGGCATCATACATGATGATGAGCCTTGCGTGCGCTC
GACCGCTGCCTCTTATGCCTCGGTTGTTGGGGGTCTGCAGGTGGTGCGAG
ATTTTGCGGAATCTGATCTCGACAAGACTTCATTTGGGCAAATACACGTG
GCCGGCTATGCGTATGCACATGGGCACAAAATGATTCGATAAATGGAAAA
GGAGAAGGCGCAGTATCTGCAATGCAGAAAATTTTGGATGATAAGCATTT
AAGATTGTATGCTAATTCGAAGGAATTTGCTGGCCTTAAAAATGGCCAGT
TACATGGAGAAATGGCGAGATGATCTGTTGAAAATAGATGACGTGACGAA
AACCAATTTGAAAGAGCATTTCTTCACTAGTAAGGCGTGCGAGGACTTCG
TCATGGGTATGCGGGGAATGGTGGGGTTTGTGCGAATGTGTTGTACGGAA
AAGGGTTATGTACTACCGCACATGCTTTCTTAGGACCATATAGAAGATCT
GTTTGGTATTATGAAAGGGCTTCCGCGGAAAGGAACGCTGACGGCCG
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protein sequence of jgi.p|Nanoce1779_2|591233

>mRNA_5049-protein ID=mRNA_5049-protein|Name=jgi.p|Nanoce1779_2|591233|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MRLKDGAGSILASLLLRLGNSIRPGLRTIGKIAKERAEKEKRASRMSISR
FLPVEGTAVEYACLLTSHYATLVANILTMDLANVRGVASELGLHLATGTI
HEGWRERRPEDKTTLEDLIDLESTVPCAPLLKGGLKPSFQIKNLGDFDGK
IGGRVRVYLRRGRIT*
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mRNA from alignment at scaffold_12:327109..329577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5049 ID=mRNA_5049|Name=jgi.p|Nanoce1779_2|591233|organism=Nannochloropsis oceanica|type=mRNA|length=2469bp|location=Sequence derived from alignment at scaffold_12:327109..329577- (Nannochloropsis oceanica)
AGGCGATATATTTAGGCGAGTGGGGGAGCTCGATGCAGATCACATGACTC
AGCGACTGTCTTCTAGATGCTTGCTGATTACATGTACGAGGAGTGGAGGA
AGGCACGTGTTGGGGCCTTTTACCGCCCCTCTCCTCCCGCAAGGTGGAAG
GAGATGCCAGCTCAGGTAAGTTTTTTTTTATTCTTAATTTTTCCTTATTA
TTATTTTTAATGGTTATTCATTTGTTTGCCATTTAATTTTTACGGCCGCC
CACTCCTTACTCATGCCCTCCCCTGGTTTTTACATAGACAGCTCAGTGAA
ACGCTCTTTTATGTGGCTGGTGGGCTCCTTGACAAGATCTGGAAGGCGGC
ACGCCGAAAGGAAGGGGAGGAAGGGGATTGCGCGAGGCGGCGTCATCGCA
AGCATTAGATTGGGGAGAATCACTCCCGGAGGCTTGGCCCTTTCTTCGAG
AGGGTGGCTGCTACAAGCCAGAAAGGAGTCATGTTTTCCTCTCCGTTATG
GTATGCGTATTTTACTTGTATGGAGGTGGTTTTGATGAACCTCATTTCTA
TTGATTTTTTAATCCACGTGGGGCAGGATGTTGAGAAGGGTGGGATGTGG
ACTGCAGCGCTTGAGAAGATCTGCATGGATGAGGGGGTGACAAATGCATG
GAAAGCTCGCATGCAGAAGATATTAGCATACCGTGTAGACGTACCTGCAG
ATGCGGTTGAAGGATGGTGCCGGCTCCATCCTTGCATCTCTCCTCCTGCG
TCTCGGAAATTCGATCCGCCCCGGCCTCCGCACTATCGGCAAGATAGCGA
AAGAGCGTGCGGAGAAGGAGAAGAGGGCGAGTCGAATGTCCATCTCGAGG
TTTTTACCCGTAGAGGGCACGGCCGTCGAGTACGCATGTTTACTCACGAG
TCACTATGCCACCTTGGTGGCAAATATTCTCACGATGGATCTGGCAAATG
TGCGTGGAGTAGCATCTGAATTAGGTTTGCATTTAGCCACAGGTACGATA
CATGAGGGATGGCGGGAAAGGCGTCCCGAAGATAAAACCACCTTGGAGGA
TTTGATAGACCTTGAGAGCACCGTGCCGTGTGCGCCACTTCTCAAGGGGG
GCCTAAAGCCGTCCTTTCAAATTAAAAATTTAGGGGATTTTGATGGAAAG
ATTGGAGGGAGGGTGCGAGTGTATCTTCGACGGGGCCGGATCACTTGATC
CCATCAGTTGCAAACGCTGGATTGTTGCCTTCCAGAGACGGCTTCAGAAA
ACAAGGGGTGCGAGCAGTTAGCTCGAAATCAATGCAGAGGATACCGCATT
GCATGGTAGTTGTAGTCGAAATATTGAGTGGGAACCTTTTGGGGTGGGCA
TGCGCCAAACGGAATTCGACAGCTGCGCCAAAGAGGGGGGGCGAATGGAA
TGCGGGTGCAATGGCGCGGGACGGAAATGGAACTGCTTATCGCCATGCCG
TACAAAAGACAAGCGGTCGCGCCTGTGCTAGCTACTGGACACGACTCCTG
AACTTTCAGCTGTATACTCGTCATACGTTGAACCACAGCTGAAGTGCGTG
TATTTAATTTTGAACGATGAGGGTAAAACGCTGACGTTGGTCCGCTTCCA
GCGGAGTAGTATCGAGGATGTCGCCTTCTCACACGCATGTCTGTGGGGAC
TGTTATGGAGTGAAGGTCCATTCCACGGCGGATTCGGGCTCTCAATGCGG
CTCTCGTGGGCAGTGTCGTCGAGAAAACCGTGGACGCACACGAGGAACTG
GAGGCCGTGGAAGCTGAGGAAGCAAGATGCCGCTCCCTCCACCTATGTCG
AGGTTATCATTGGTCGACTGGCCTTTTAGTAATTACAAGCTTCGAGATAT
CTACTGCGATGCCCGTTTAGACTGTCGGAGTCGTCAAACGCTTGCTGTAG
ACTTTGTCAAGAAGATGACAGGATTGTCGCCAAAAACGGCATCATACATG
ATGATGAGCCTTGCGTGCGCTCGACCGCTGCCTCTTATGCCTCGGTTGTT
GGGGGTCTGCAGGTGGTGCGAGATTTTGCGGAATCTGATCTCGACAAGAC
TTCATTTGGGCAAATACACGTGGCCGGCTATGCGTATGCACATGGGCACA
AAATGATTCGATAAATGGAAAAGGAGAAGGCGCAGTATCTGCAATGCAGA
AAATTTTGGATGATAAGCATTTAAGATTGTATGCTAATTCGAAGGAATTT
GCTGGCCTTAAAAATGGCCAGTTACATGGAGAAATGGCGAGATGATCTGT
TGAAAATAGATGACGTGACGAAAACCAATTTGAAAGAGCATTTCTTCACT
AGTAAGGCGTGCGAGGACTTCGTCATGGGTATGCGGGGAATGGTGGGGTT
TGTGCGAATGTGTTGTACGGAAAAGGGTTATGTACTACCGCACATGCTTT
CTTAGGACCATATAGAAGATCTGTTTGGTATTATGAAAGGGCTTCCGCGG
AAAGGAACGCTGACGGCCG
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Coding sequence (CDS) from alignment at scaffold_12:327109..329577-

>mRNA_5049 ID=mRNA_5049|Name=jgi.p|Nanoce1779_2|591233|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_12:327109..329577- (Nannochloropsis oceanica)
ATGCGGTTGAAGGATGGTGCCGGCTCCATCCTTGCATCTCTCCTCCTGCG
TCTCGGAAATTCGATCCGCCCCGGCCTCCGCACTATCGGCAAGATAGCGA
AAGAGCGTGCGGAGAAGGAGAAGAGGGCGAGTCGAATGTCCATCTCGAGG
TTTTTACCCGTAGAGGGCACGGCCGTCGAGTACGCATGTTTACTCACGAG
TCACTATGCCACCTTGGTGGCAAATATTCTCACGATGGATCTGGCAAATG
TGCGTGGAGTAGCATCTGAATTAGGTTTGCATTTAGCCACAGGTACGATA
CATGAGGGATGGCGGGAAAGGCGTCCCGAAGATAAAACCACCTTGGAGGA
TTTGATAGACCTTGAGAGCACCGTGCCGTGTGCGCCACTTCTCAAGGGGG
GCCTAAAGCCGTCCTTTCAAATTAAAAATTTAGGGGATTTTGATGGAAAG
ATTGGAGGGAGGGTGCGAGTGTATCTTCGACGGGGCCGGATCACTTGA
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Synonyms
Publications