jgi.p|Nanoce1779_2|566314, mRNA_5047 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566314
Unique NamemRNA_5047
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length582
Alignment locationscaffold_12:321665..322613 -

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Properties
Property NameValue
TranscriptId566400
TrackFilteredModels2
ProteinId566314
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:321665..322613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566314gene_5047Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566314mRNA_5047-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5047CDS_5047Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5047 ID=mRNA_5047|Name=jgi.p|Nanoce1779_2|566314|organism=Nannochloropsis oceanica|type=mRNA|length=582bp
ATGCAAGCAGAGTCCATGTCACGTGCGGATGCCTTATTGACTGTAGGTAC
GGCCTTCTTCGGTGCGGCAGCCGTCGTGACGGGGACCTCTGGCCCGGCGC
ATGCCGTCACCGCAGACCAGCCTGCCAGCGGCATCCATGTTGGAAAAACT
ATTGGGAGCAAAAAAGAGGCACTCGCCATCATCCGAAAACACAAAAACCT
CTTATATCTGGCTACAGATGCCAATGGCGACATCGCCTATAAGAACGACG
AGGATGCGACCAAGAGAGGTTTTCAAGGCTTGAAGGAGCTGGGCGATGCG
GCAGGAATAGAGATGAAGCACTACCCTCTCAAGGTGGACTCTCTAACGGC
ATCCGATGCGGACAACTTGGTGGAGATCCTGACTGGGTTACCGCGACCCA
CGTACATCATGTGCAAGTCGGGAGCCCGTGCCAGTGCCTTGAAGGCCCTC
TACCTCGCCCGTTTGGCGGATTTGAAGGAGGAAAAGGATCTGAAAAAAAA
CATTGGAACCGACTTGGAACGCCTCTGGCTCAAAATTCCGGCTGCTAAGG
ACTGGGTTCTTTCCAATAGCGCAGTGCGATGA
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protein sequence of jgi.p|Nanoce1779_2|566314

>mRNA_5047-protein ID=mRNA_5047-protein|Name=jgi.p|Nanoce1779_2|566314|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MQAESMSRADALLTVGTAFFGAAAVVTGTSGPAHAVTADQPASGIHVGKT
IGSKKEALAIIRKHKNLLYLATDANGDIAYKNDEDATKRGFQGLKELGDA
AGIEMKHYPLKVDSLTASDADNLVEILTGLPRPTYIMCKSGARASALKAL
YLARLADLKEEKDLKKNIGTDLERLWLKIPAAKDWVLSNSAVR*
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mRNA from alignment at scaffold_12:321665..322613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5047 ID=mRNA_5047|Name=jgi.p|Nanoce1779_2|566314|organism=Nannochloropsis oceanica|type=mRNA|length=949bp|location=Sequence derived from alignment at scaffold_12:321665..322613- (Nannochloropsis oceanica)
ATGCAAGCAGAGTCCATGTCACGTGCGGATGCCTTATTGACTGTAGGTAC
GGCCTTCTTCGGTGCGGCAGCCGTCGTGACGGGGACCTCTGGCCCGGCGC
ATGCCGTCACCGCAGACCAGCCTGCCAGCGGCATCCATGTTGGAAAAACT
ATTGGGAGCAAAAAAGAGGCACTCGCCATCATCCGAAAACACAAAAACCT
CTTATATCTGGCTACAGGTGAGTAAATGGCATTTCAGATGTGAGTGTGCG
GTACACGTCTGGTGACTGCCTCGCATCATCCATGACCTGAACCCACATTT
GTAGTGCCCTTCCCTTCTTTCGTGCACCCCTTTTCTCTAAGCAAATGTGT
TCACTGTCGCGAAGCCTTCACTCTCGTTCATGCAATTATCCCTCCAATCT
TTGATTTTGCCTTTGATGCCGCCACCCCCTATTTTGCCACTTTCAATTCA
TCGGTCCAATCGCATGTCCCCCCCCCCCACTCCCGAATGACTAGATGCCA
ATGGCGACATCGCCTATAAGAACGACGAGGATGCGACCAAGAGAGGTTTT
CAAGGCTTGAAGGAGCTGGGCGATGCGGCAGGAATAGAGATGAAGCACTA
CCCTCTCAAGGTGGACTCTCTAACGGCATCCGATGCGGACAACTTGGTGG
AGATCCTGACTGGGTTACCGCGACCCACGTACATCATGTGCAAGTAAGTG
AAGCGTAGAAAGAAAGGGGTGGAATCGATTGTGGGATCTTCCATGTAATT
ATCCGTCTTATGTGCCCGCGATCTCTGGTACAGGTCGGGAGCCCGTGCCA
GTGCCTTGAAGGCCCTCTACCTCGCCCGTTTGGCGGATTTGAAGGAGGAA
AAGGATCTGAAAAAAAACATTGGAACCGACTTGGAACGCCTCTGGCTCAA
AATTCCGGCTGCTAAGGACTGGGTTCTTTCCAATAGCGCAGTGCGATGA
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Coding sequence (CDS) from alignment at scaffold_12:321665..322613-

>mRNA_5047 ID=mRNA_5047|Name=jgi.p|Nanoce1779_2|566314|organism=Nannochloropsis oceanica|type=CDS|length=1746bp|location=Sequence derived from alignment at scaffold_12:321665..322613- (Nannochloropsis oceanica)
GTCGGGAGCCCGTGCCAGTGCCTTGAAGGCCCTCTACCTCGCCCGTTTGG
CGGATTTGAAGGAGGAAAAGGATCTGAAAAAAAACATTGGAACCGACTTG
GAACGCCTCTGGCTCAAAATTCCGGCTGCTAAGGACTGGGTTCTTTCCAA
TAGCGCAGTGCGATGAATGCCAATGGCGACATCGCCTATAAGAACGACGA
GGATGCGACCAAGAGAGGTTTTCAAGGCTTGAAGGAGCTGGGCGATGCGG
CAGGAATAGAGATGAAGCACTACCCTCTCAAGGTGGACTCTCTAACGGCA
TCCGATGCGGACAACTTGGTGGAGATCCTGACTGGGTTACCGCGACCCAC
GTACATCATGTGCAAATGCAAGCAGAGTCCATGTCACGTGCGGATGCCTT
ATTGACTGTAGGTACGGCCTTCTTCGGTGCGGCAGCCGTCGTGACGGGGA
CCTCTGGCCCGGCGCATGCCGTCACCGCAGACCAGCCTGCCAGCGGCATC
CATGTTGGAAAAACTATTGGGAGCAAAAAAGAGGCACTCGCCATCATCCG
AAAACACAAAAACCTCTTATATCTGGCTACAGGTCGGGAGCCCGTGCCAG
TGCCTTGAAGGCCCTCTACCTCGCCCGTTTGGCGGATTTGAAGGAGGAAA
AGGATCTGAAAAAAAACATTGGAACCGACTTGGAACGCCTCTGGCTCAAA
ATTCCGGCTGCTAAGGACTGGGTTCTTTCCAATAGCGCAGTGCGATGAAT
GCCAATGGCGACATCGCCTATAAGAACGACGAGGATGCGACCAAGAGAGG
TTTTCAAGGCTTGAAGGAGCTGGGCGATGCGGCAGGAATAGAGATGAAGC
ACTACCCTCTCAAGGTGGACTCTCTAACGGCATCCGATGCGGACAACTTG
GTGGAGATCCTGACTGGGTTACCGCGACCCACGTACATCATGTGCAAATG
CAAGCAGAGTCCATGTCACGTGCGGATGCCTTATTGACTGTAGGTACGGC
CTTCTTCGGTGCGGCAGCCGTCGTGACGGGGACCTCTGGCCCGGCGCATG
CCGTCACCGCAGACCAGCCTGCCAGCGGCATCCATGTTGGAAAAACTATT
GGGAGCAAAAAAGAGGCACTCGCCATCATCCGAAAACACAAAAACCTCTT
ATATCTGGCTACAGGTCGGGAGCCCGTGCCAGTGCCTTGAAGGCCCTCTA
CCTCGCCCGTTTGGCGGATTTGAAGGAGGAAAAGGATCTGAAAAAAAACA
TTGGAACCGACTTGGAACGCCTCTGGCTCAAAATTCCGGCTGCTAAGGAC
TGGGTTCTTTCCAATAGCGCAGTGCGATGAATGCCAATGGCGACATCGCC
TATAAGAACGACGAGGATGCGACCAAGAGAGGTTTTCAAGGCTTGAAGGA
GCTGGGCGATGCGGCAGGAATAGAGATGAAGCACTACCCTCTCAAGGTGG
ACTCTCTAACGGCATCCGATGCGGACAACTTGGTGGAGATCCTGACTGGG
TTACCGCGACCCACGTACATCATGTGCAAATGCAAGCAGAGTCCATGTCA
CGTGCGGATGCCTTATTGACTGTAGGTACGGCCTTCTTCGGTGCGGCAGC
CGTCGTGACGGGGACCTCTGGCCCGGCGCATGCCGTCACCGCAGACCAGC
CTGCCAGCGGCATCCATGTTGGAAAAACTATTGGGAGCAAAAAAGAGGCA
CTCGCCATCATCCGAAAACACAAAAACCTCTTATATCTGGCTACAG
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Synonyms
Publications