jgi.p|Nanoce1779_2|591214, mRNA_5045 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591214
Unique NamemRNA_5045
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1873
Alignment locationscaffold_12:315492..317657 -

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Properties
Property NameValue
TranscriptId591300
TrackFilteredModels2
ProteinId591214
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:315492..317657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591214gene_5045Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591214mRNA_5045-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5045CDS_5045Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5045 ID=mRNA_5045|Name=jgi.p|Nanoce1779_2|591214|organism=Nannochloropsis oceanica|type=mRNA|length=1873bp
ACAGCTTTTTCAAGCGGTACCTATGGCTTTCCATCTCGAGGACATCCTCA
CTGCGTTTACGGAGAAGTACAGGAAGAACAAGGTGTTGACGAGTTGCCTT
GCGGAAGCCACAGGCACCTTCCTGCTCGTATTTTTCGGCTTAGGCTTCAC
GGCAAACGCTGTTCTCGTTAACGCGCCCATAGACCTCTTTGGTGGAGCTT
TCCTATGGGGCTTGGCCTTGACTCTGGGCATCTACGTGACCGCCTCCATC
TCTACTGCGCATCTGAACCCGGCTGTTTCAATTGCTCTGGCAATTTTTCG
CTCCAAGGAGTTCACACCTCGGATGTGCGTGTGTTACATCGTCAGTCAAA
CCATCGGGGCCTTCATAGGCGCCCTCCTTGTCTTTGGGCTCTTCAACGAC
TTTCTCGTCGCATATGAGCAAGAGAACAATATCGTGCGGGGATCTGTGGC
TAGCATTGGGCAAGAGATGATTTATGGGGAGTTCTTTCCCAATCCCGCAA
TCATTCCCCACACTGTTGGGAACAGCGCTCTTCTCCCGGGAGGCTCGATC
GAGCACGCATTTGCCATGGAATTTGTTGGTACGTTTTTGTTGATGTTTTT
GATCCTGGCAATCGTGGATCGTAACCAGAACACTTTGAAGCATAAGGAAT
TGGCGCCACTCATTATTGGCTTATCCTTGGTGAGCATCGTTTCTGTTGTG
GCCCCGTCGACGGAGGCATGCATCAACCCCGCAAGGGACTTCGGTGCGAG
GCTCGTGGCGGTGATGATGGGATATGGAAAAGTAGCGCTTCCGGGGCCGA
GGAACGAAATGTGGGTCTATATCTTTGCGCCGATATTGGGGGCGTTGGTG
GGAGCGTTGTTCCATGATCTTTTGATTGCTCCGGGCCTGCGAAGGACTGC
GAAACCGTATGTGACGTATCAGTCGAAGGTCCATGATTTGCAATTGCAGA
GGTCGCTGCGGTGAGTGTGTATTTGTCTTCCCCCCGACGGGTGGAGGGGA
AAAGACGAAGGAGGTTGAAGGGGGGGGGGGTCATACGTATTCGCTTACAT
TTCCACCCCCTATTTCTCACAATCATCTCCTGCCCCCTTGATTCACTCAA
ATAGCGACATCTTCAGCAACCAGGGGTCCAAAGACGAAATCAGCAGCCCC
TCTTCTGGTGGTGGTCTCACCCTCGAGCAACAGACGAAGCTGCTTGCCAT
TCTGGCTGGTGCTGCCTTTCAAGGCGGCAAGCAGGAGGAAGCGGCGGAGG
CAGAGGCACGCCCTGCCTAAAGAGATGAAATGTGTGCCATGTTGACAAAA
CGATTAGCACAGAAGACCATCAAACCGTATAAATAATAAGTTTAAAGGAA
AGCAGAGAGAAGAGGAGACCAATAATGCAAGGGAAATGGGTAAAAATGAG
TGACTGGGAAAGTAAAATGAGAATGGTGTGATATAGGGATGAGGGCGAGA
GAGGTGCCCTTCTGCTCTGTTGATGGGAACAATTACGTGGGCGAATAACT
ATAAACTACGATGGATTTTGGAGAAAGGCTAGCTTCTTTTCTAGAGGAAG
GGAATGCACGCTTTTGCCGTTTCAAAAAAAAAATCATCAAATGCATTCAA
GGAAAGGACGTGTGTATGCGACTTGCATGTGTGCGATTATAAAGAATGAT
GCCGGAGGAAATAGAGGTTAACTACTCACGATAAATAACTGTATCAATAA
CTGAATTATTCTTAATTTGGCAGCTTTATGTATAGGGAGCCAGAGGAGGA
CGGGAAAAATGAGGTGGGAGGAAGAGGATGAAAGTCAAAGACAGTCGAGA
AGGGTGTAAAAAACAAACATTTACCCACAGCGAGATAGCAGAAGAAATAA
GACAAGACAAATCGTTCGCCAAG
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protein sequence of jgi.p|Nanoce1779_2|591214

>mRNA_5045-protein ID=mRNA_5045-protein|Name=jgi.p|Nanoce1779_2|591214|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MAFHLEDILTAFTEKYRKNKVLTSCLAEATGTFLLVFFGLGFTANAVLVN
APIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPR
MCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMI
YGEFFPNPAIIPHTVGNSALLPGGSIEHAFAMEFVGTFLLMFLILAIVDR
NQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMG
YGKVALPGPRNEMWVYIFAPILGALVGALFHDLLIAPGLRRTAKPYVTYQ
SKVHDLQLQRSLR*
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mRNA from alignment at scaffold_12:315492..317657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5045 ID=mRNA_5045|Name=jgi.p|Nanoce1779_2|591214|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp|location=Sequence derived from alignment at scaffold_12:315492..317657- (Nannochloropsis oceanica)
ACAGCTTTTTCAAGCGGTACCTATGGCTTTCCATCTCGAGGACATCCTCA
CTGCGTTTACGGAGAAGTACAGGAAGAACAAGGTGTTGACGAGTTGCCTT
GCGGAAGCCACAGGCACCTTCCTGCTCGTATTTTTCGGCTTAGGCTTCAC
GGCAAACGCTGTTCTCGTTAACGCGCCCATAGACCTCTTTGGTGGAGCTT
TCCTATGGGGCTTGGCCTTGACTCTGGGCATCTACGTGACCGCCTCCATC
TCTACTGGTACGTGCCCGGACAGGGAATGGGAAAAAGAATAGTTGGCCAA
GTGGGCCACTTGTGTTCTTGCCCGAAGGCCTGGCAGGACTCCTTCATATT
GCGCCTTGATTTGACGGCATACAAGAAGCATATGAGCAAGCTTACTTCCT
GTGTATCTGCCTTATGTGTGATGTAGAGAGAGCGGGCATTGGTCGCTATG
CTTCTACACGCCGCCACACAATATGCGTTCATGAACATTATCCTTACCGC
CCACATCCCTCAAACCTCTCCCTTTCCCTTCACCCATCCTACACACATAG
CGCATCTGAACCCGGCTGTTTCAATTGCTCTGGCAATTTTTCGCTCCAAG
GAGTTCACACCTCGGATGTGCGTGTGTTACATCGTCAGTCAAACCATCGG
GGCCTTCATAGGCGCCCTCCTTGTCTTTGGGCTCTTCAACGACTTTCTCG
TCGCATATGAGCAAGAGAACAATATCGTGCGGGGATCTGTGGCTAGCATT
GGGCAAGAGATGATTTATGGGGAGTTCTTTCCCAATCCCGCAATCATTCC
CCACACTGTTGGGAACAGCGCTCTTCTCCCGGGAGGCTCGATCGAGCACG
CATTTGCCATGGAATTTGTTGGTACGTTTTTGTTGATGTTTTTGATCCTG
GCAATCGTGGATCGTAACCAGAACACTTTGAAGCATAAGGAATTGGCGCC
ACTCATTATTGGCTTATCCTTGGTGAGCATCGTTTCTGTTGTGGCCCCGT
CGACGGAGGCATGCATCAACCCCGCAAGGGACTTCGGTGCGAGGCTCGTG
GCGGTGATGATGGGATATGGAAAAGTAGCGCTTCCGGGGCCGAGGAACGA
AATGTGGGTCTATATCTTTGCGCCGATATTGGGGGCGTTGGTGGGAGCGT
TGTTCCATGATCTTTTGATTGCTCCGGGCCTGCGAAGGACTGCGAAACCG
TATGTGACGTATCAGTCGAAGGTCCATGATTTGCAATTGCAGAGGTCGCT
GCGGTGAGTGTGTATTTGTCTTCCCCCCGACGGGTGGAGGGGAAAAGACG
AAGGAGGTTGAAGGGGGGGGGGGTCATACGTATTCGCTTACATTTCCACC
CCCTATTTCTCACAATCATCTCCTGCCCCCTTGATTCACTCAAATAGCGA
CATCTTCAGCAACCAGGGGTCCAAAGACGAAATCAGCAGCCCCTCTTCTG
GTGGTGGTCTCACCCTCGAGCAACAGACGAAGCTGCTTGCCATTCTGGCT
GGTGCTGCCTTTCAAGGCGGCAAGCAGGAGGAAGCGGCGGAGGCAGAGGC
ACGCCCTGCCTAAAGAGATGAAATGTGTGCCATGTTGACAAAACGATTAG
CACAGAAGACCATCAAACCGTATAAATAATAAGTTTAAAGGAAAGCAGAG
AGAAGAGGAGACCAATAATGCAAGGGAAATGGGTAAAAATGAGTGACTGG
GAAAGTAAAATGAGAATGGTGTGATATAGGGATGAGGGCGAGAGAGGTGC
CCTTCTGCTCTGTTGATGGGAACAATTACGTGGGCGAATAACTATAAACT
ACGATGGATTTTGGAGAAAGGCTAGCTTCTTTTCTAGAGGAAGGGAATGC
ACGCTTTTGCCGTTTCAAAAAAAAAATCATCAAATGCATTCAAGGAAAGG
ACGTGTGTATGCGACTTGCATGTGTGCGATTATAAAGAATGATGCCGGAG
GAAATAGAGGTTAACTACTCACGATAAATAACTGTATCAATAACTGAATT
ATTCTTAATTTGGCAGCTTTATGTATAGGGAGCCAGAGGAGGACGGGAAA
AATGAGGTGGGAGGAAGAGGATGAAAGTCAAAGACAGTCGAGAAGGGTGT
AAAAAACAAACATTTACCCACAGCGAGATAGCAGAAGAAATAAGACAAGA
CAAATCGTTCGCCAAG
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Coding sequence (CDS) from alignment at scaffold_12:315492..317657-

>mRNA_5045 ID=mRNA_5045|Name=jgi.p|Nanoce1779_2|591214|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at scaffold_12:315492..317657- (Nannochloropsis oceanica)
CGCATCTGAACCCGGCTGTTTCAATTGCTCTGGCAATTTTTCGCTCCAAG
GAGTTCACACCTCGGATGTGCGTGTGTTACATCGTCAGTCAAACCATCGG
GGCCTTCATAGGCGCCCTCCTTGTCTTTGGGCTCTTCAACGACTTTCTCG
TCGCATATGAGCAAGAGAACAATATCGTGCGGGGATCTGTGGCTAGCATT
GGGCAAGAGATGATTTATGGGGAGTTCTTTCCCAATCCCGCAATCATTCC
CCACACTGTTGGGAACAGCGCTCTTCTCCCGGGAGGCTCGATCGAGCACG
CATTTGCCATGGAATTTGTTGGTACGTTTTTGTTGATGTTTTTGATCCTG
GCAATCGTGGATCGTAACCAGAACACTTTGAAGCATAAGGAATTGGCGCC
ACTCATTATTGGCTTATCCTTGGTGAGCATCGTTTCTGTTGTGGCCCCGT
CGACGGAGGCATGCATCAACCCCGCAAGGGACTTCGGTGCGAGGCTCGTG
GCGGTGATGATGGGATATGGAAAAGTAGCGCTTCCGGGGCCGAGGAACGA
AATGTGGGTCTATATCTTTGCGCCGATATTGGGGGCGTTGGTGGGAGCGT
TGTTCCATGATCTTTTGATTGCTCCGGGCCTGCGAAGGACTGCGAAACCG
TATGTGACGTATCAGTCGAAGGTCCATGATTTGCAATTGCAGAGGTCGCT
GCGGTGAATGGCTTTCCATCTCGAGGACATCCTCACTGCGTTTACGGAGA
AGTACAGGAAGAACAAGGTGTTGACGAGTTGCCTTGCGGAAGCCACAGGC
ACCTTCCTGCTCGTATTTTTCGGCTTAGGCTTCACGGCAAACGCTGTTCT
CGTTAACGCGCCCATAGACCTCTTTGGTGGAGCTTTCCTATGGGGCTTGG
CCTTGACTCTGGGCATCTACGTGACCGCCTCCATCTCTACTGCGCATCTG
AACCCGGCTGTTTCAATTGCTCTGGCAATTTTTCGCTCCAAGGAGTTCAC
ACCTCGGATGTGCGTGTGTTACATCGTCAGTCAAACCATCGGGGCCTTCA
TAGGCGCCCTCCTTGTCTTTGGGCTCTTCAACGACTTTCTCGTCGCATAT
GAGCAAGAGAACAATATCGTGCGGGGATCTGTGGCTAGCATTGGGCAAGA
GATGATTTATGGGGAGTTCTTTCCCAATCCCGCAATCATTCCCCACACTG
TTGGGAACAGCGCTCTTCTCCCGGGAGGCTCGATCGAGCACGCATTTGCC
ATGGAATTTGTTGGTACGTTTTTGTTGATGTTTTTGATCCTGGCAATCGT
GGATCGTAACCAGAACACTTTGAAGCATAAGGAATTGGCGCCACTCATTA
TTGGCTTATCCTTGGTGAGCATCGTTTCTGTTGTGGCCCCGTCGACGGAG
GCATGCATCAACCCCGCAAGGGACTTCGGTGCGAGGCTCGTGGCGGTGAT
GATGGGATATGGAAAAGTAGCGCTTCCGGGGCCGAGGAACGAAATGTGGG
TCTATATCTTTGCGCCGATATTGGGGGCGTTGGTGGGAGCGTTGTTCCAT
GATCTTTTGATTGCTCCGGGCCTGCGAAGGACTGCGAAACCGTATGTGAC
GTATCAGTCGAAGGTCCATGATTTGCAATTGCAGAGGTCGCTGCGGTGAA
TGGCTTTCCATCTCGAGGACATCCTCACTGCGTTTACGGAGAAGTACAGG
AAGAACAAGGTGTTGACGAGTTGCCTTGCGGAAGCCACAGGCACCTTCCT
GCTCGTATTTTTCGGCTTAGGCTTCACGGCAAACGCTGTTCTCGTTAACG
CGCCCATAGACCTCTTTGGTGGAGCTTTCCTATGGGGCTTGGCCTTGACT
CTGGGCATCTACGTGACCGCCTCCATCTCTACTG
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Synonyms
Publications