|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 591295 |
| Track | FilteredModels2 |
| ProteinId | 591209 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:308809..311844 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5043 ID=mRNA_5043|Name=jgi.p|Nanoce1779_2|591209|organism=Nannochloropsis oceanica|type=mRNA|length=2881bp
ACAGCAAGGAGCATGCAGGCCTTTGCAGGCCCATGCTGGAGCCAGACCCC
TGGCGGTTGCGCCACAACACCTCGCATCGCCTCCTTCGGTGTCCACCTCG
TCGTCTGTTTCGCGCTCCTATTTGCAGCTCCAAGACTGGTCACATCATCG
TCGTCAATATCACCACCAAGTGGCAGCAGCAGCAACGGCAGCATAACTGC
ACCGTGTAGCCTGGAGAACTTCGAGGCATTTTGCGAGGAGTTCCACAAGG
ACTACACCGCCAACCCAAAAGAGCTAGCCCGGCGCTTCCAGGCCTGGAGC
AAGTCCTGTATTTATTTGGAAAATTATAAAGTGGAGCATCCTGACGCCTC
TTTTCACATGGCTTACAATCACCTGAGTGACCGCTTGCCAGAGGAACACG
AGGCCATGTTCGGGTACAAGGTGAAGCCGCGGGCAGGGCGTGTCACGCCT
TCTTCTCTCTCTGACAGTATCAACAACATTACCCACCGAGGCCTGCAAGG
TTTCCACAAACACGAGCGGTCCGAAGAGGATGCAAAAGAAGAAGCAGCCG
ACGGCACGTATCCCGTCCCTCCCGAGTGGGCGAAGGAGCTCATGCCCCGA
GACTTACCCGCTGCTGTGGACTGGCGGGTGGCCAAACTAAACCCTGATAA
TGTTGTTGCCGTGACACCTGTCAAAAATCAAGCTGCCTGTGGTGCTTGTT
GGGCGTTTACGACAGCCGCGGCGGTGGAGGGAGCGGTGGCGGTCACAACG
AAAGTTCTAAATGAATTGAGTAATCAGCAATTGATTGATTGTGTGAAGCA
GAATGAGGGGTGTAACGGCGGAGATTTTGACTACGCATTCAAGTGGGTCG
CGCAGAAAGGCTTGGCGTCTTCATCAGATTACACATTTACTCAAAGCCAG
GGAAAATGTCGGGCGAATGAATTCGCGGTCGCCTCGCAGATCAAAGATGC
ATATGAGACGGCTCCGTGCAGTAAGAATGGGTTAATGAGCATCGTGGCAC
GCCGGCCTGTGGCTGTTGCCATTGATGGATCTTGTGAGGCATTTGTTCAG
TATCGGGGAGGGATATACACGGAGAATTGTGGGACTGATCTGAATCATGC
GGTGACGATTGTGGGGTATGGAACGGATGAAAAGTCGGGAACTGATTACT
GGATCATCAAAAACAGTTGGGGTAGGCGCTGGGGTTCCTCTGGCTACGGA
CTGATCGCCCGCGGGATAGGGAAATGCGGCGTGAGCAATATGGAGGAGTA
TGGTTATTATGCTGCTGGAGGTATTGCTTTTGTGAATGGGACGGGTTTTT
TCAGTGATGATGCCTTGGCACAAGACCCGAATGTCGGTTTCTTCGATCAG
ATTTTACAGTGGAAATACCTAAGTGTTGTCTTGGGCATTGCGATCGCTCT
ATTGGCGTTCCCGATTATCATGTCATTCTTACGCGCGTTACACCGATGCT
GTTGCGGGGCACCAGCAGGAGGAAAAGGAAGAGGGAGGGGAGGGCGGCAA
ATGGGCTCTCCCAACGGTGCAGCACCTGCGATGGTGGTGCCGATCGGTAG
TGGTGGAGGGGGAGGACGAACGCCTCCCTCGCGTTCTCCTGGAGGGGATC
GAGGCCCTCCTCCTCGGTCTCCTCCAAAAATTTCATCCCGAAATTCTCCA
CTACCACCGCCGCCGCCGCCGACAGTGCCAGGCACAGAAATGGCAAGTGA
GTGGGCTTGTCCGGCGTGTACGTTCTTCAATGCCCCGCATATGAGTGTGT
GTCAGATTTGTGGGCATCGAAATTAGGAGGGAAACGAAAACAAAAGAAGG
AGAGGAAAGGGTCACAGTGGATAATAGTTGTAGAGGTAACTAGAGAAGTT
GGAGTATGAGAAGAATGAATCGTTTGTCTTCTTCCTTGTGGGACGAGGAA
TGGACCAAGACGGACAATCTTTGGGTGAAGAAGGAAAAGGCGGCATGGAG
GAACATGAATGAATACCTGGATGGCAGGGAAATAAGTAAAATGAATATGC
AAAATAACCTACGGGCTTGAGATAGAAATAAGTAACAGGCAAAAAATGCA
TAAACTCAAAAGACCGGGGTAACGGCTCTCATGTCTCAAAGGAAGTCTTG
AATCATGCAATGTTTCTTTGCCTTTCTATCGCTCTATATGTAACATGCTT
TTAATGTCTTGATTCTCTACCAAAGACTAGTCCTAGCCCCCTTCCTCCAC
CTCTTCTTCCTCCCCCTCCGTCACAATCTCAATCTCTCCCGTCGCCAAGG
CCATAATACCTTGAAACAAGAGAAAGAATCCGACAACCCCACCAACCACC
GTCAACCAAATCACATTCTCCTTGTGCCTCGCCCGTTCCTCTTCCAATTC
CTCCGCCTTCTTCCCCCCTTCCGGGCCAGCAGCCGTTGTGCCTGCTTGTT
TCTTTCCAACCCCACCGACGCCGCCTTTTGGCCCTTCACCTTCTTCTAAG
AATTTGTGAAGCATTGGCTCGGGGACTAAGGGGGCCTCAGCGCACAATTT
AGCGGCTTTAACTTGATTGAATGGGTTGCGGCTGTTGACGTAGTCGGCGC
GTTTGTAATACTCCTTTACATTGGACGCCACCACAAAACCTTGCTGTTGC
TGCTGCTCTGCAGAAGAGGCTACTGTTGCACTTCCAATCTCAAAAAACTC
CTCGGCAATACGTCTGAAAAAACGCATGAGATTTCCAAACGTACTCACTA
TCACCAAAACATTCACATCGGCCAACGCTTCTACTAGGTGCCCGAATAAA
CACGCATCAAAACTCGTAGGTTCTCGTCCAAAGAAGAAATCCCCCGTACT
TGCCCCCAGCCAGTTATCCAACTCACGATATACGACACGCGCTCTCGCCA
ACAGCTCCCCCAGACCCACCCCTCCCTCCAC back to topprotein sequence of jgi.p|Nanoce1779_2|591209 >mRNA_5043-protein ID=mRNA_5043-protein|Name=jgi.p|Nanoce1779_2|591209|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MQAFAGPCWSQTPGGCATTPRIASFGVHLVVCFALLFAAPRLVTSSSSIS
PPSGSSSNGSITAPCSLENFEAFCEEFHKDYTANPKELARRFQAWSKSCI
YLENYKVEHPDASFHMAYNHLSDRLPEEHEAMFGYKVKPRAGRVTPSSLS
DSINNITHRGLQGFHKHERSEEDAKEEAADGTYPVPPEWAKELMPRDLPA
AVDWRVAKLNPDNVVAVTPVKNQAACGACWAFTTAAAVEGAVAVTTKVLN
ELSNQQLIDCVKQNEGCNGGDFDYAFKWVAQKGLASSSDYTFTQSQGKCR
ANEFAVASQIKDAYETAPCSKNGLMSIVARRPVAVAIDGSCEAFVQYRGG
IYTENCGTDLNHAVTIVGYGTDEKSGTDYWIIKNSWGRRWGSSGYGLIAR
GIGKCGVSNMEEYGYYAAGGIAFVNGTGFFSDDALAQDPNVGFFDQILQW
KYLSVVLGIAIALLAFPIIMSFLRALHRCCCGAPAGGKGRGRGGRQMGSP
NGAAPAMVVPIGSGGGGGRTPPSRSPGGDRGPPPRSPPKISSRNSPLPPP
PPPTVPGTEMASEWACPACTFFNAPHMSVCQICGHRN* back to topmRNA from alignment at scaffold_12:308809..311844- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5043 ID=mRNA_5043|Name=jgi.p|Nanoce1779_2|591209|organism=Nannochloropsis oceanica|type=mRNA|length=3036bp|location=Sequence derived from alignment at scaffold_12:308809..311844- (Nannochloropsis oceanica)
ACAGCAAGGAGCATGCAGGCCTTTGCAGGCCCATGCTGGAGCCAGACCCC
TGGCGGTTGCGCCACAACACCTCGCATCGCCTCCTTCGGTGTCCACCTCG
TCGTCTGTTTCGCGCTCCTATTTGCAGCTCCAAGACTGGTCACATCATCG
TCGTCAATATCACCACCAAGTGGCAGCAGCAGCAACGGCAGCATAACTGC
ACCGTGTAGCCTGGAGAACTTCGAGGCATTTTGCGAGGAGTTCCACAAGG
ACTACACCGCCAACCCAAAAGAGCTAGCCCGGCGCTTCCAGGCCTGGAGC
AAGTCCTGTATTTATTTGGAAAATTATAAAGTGGAGCATCCTGACGCCTC
TTTTCACATGGCTTACAATCACCTGAGTGACCGCTTGCCAGAGGAACACG
AGGCCATGTTCGGGTACAAGGTGAAGCCGCGGGCAGGGCGTGTCACGCCT
TCTTCTCTCTCTGACAGTATCAACAACATTACCCACCGAGGCCTGCAAGG
TTTCCACAAACACGAGCGGTCCGAAGAGGATGCAAAAGAAGAAGCAGCCG
ACGGCACGTATCCCGTCCCTCCCGAGTGGGCGAAGGAGCTCATGCCCCGA
GACTTACCCGCTGCTGTGGACTGGCGGGTGGCCAAACTAAACCCTGATAA
TGTTGTTGCCGTGACACCTGTCAAAAATCAAGCTGCCTGTGGTGCTTGTT
GGGCGTTTACGACAGCCGCGGCGGTGGAGGGAGCGGTGGCGGTCACAACG
AAAGTTCTAAATGAATTGAGTAATCAGCAATTGATTGATTGTGTGAAGCA
GAATGAGGGGTGTAACGGCGGAGATTTTGACTACGCATTCAAGTGGGTCG
CGCAGAAAGGCTTGGCGTCTTCATCAGATTACACATTTACTCAAAGCCAG
GGAAAATGTCGGGCGAATGAATTCGCGGTCGCCTCGCAGATCAAAGATGC
ATATGAGACGGCTCCGTGCAGTAAGAATGGGTTAATGAGCATCGTGGCAC
GCCGGCCTGTGGCTGTTGCCATTGATGGATCTTGTGAGGCATTTGTTCAG
TATCGGGGAGGGATATACACGGAGAATTGTGGGACTGATCTGAATCATGC
GGTGACGATTGTGGGGTATGGAACGGATGAAAAGTCGGGAACTGATTACT
GGGTACGTGTGGGAGGGGAAGGGGGAGGGTTGGCGTTCGCAGCATGGAGG
CTTCTCTTCATGCTTCCAAGCGTGAGGAATGGTTGTTTCTGTTTATTACT
TTGTCATGCACTTTCAATTGTCGAGCCCTTATTCCGCCTTATTTAAAAAA
AATACAGATCATCAAAAACAGTTGGGGTAGGCGCTGGGGTTCCTCTGGCT
ACGGACTGATCGCCCGCGGGATAGGGAAATGCGGCGTGAGCAATATGGAG
GAGTATGGTTATTATGCTGCTGGAGGTATTGCTTTTGTGAATGGGACGGG
TTTTTTCAGTGATGATGCCTTGGCACAAGACCCGAATGTCGGTTTCTTCG
ATCAGATTTTACAGTGGAAATACCTAAGTGTTGTCTTGGGCATTGCGATC
GCTCTATTGGCGTTCCCGATTATCATGTCATTCTTACGCGCGTTACACCG
ATGCTGTTGCGGGGCACCAGCAGGAGGAAAAGGAAGAGGGAGGGGAGGGC
GGCAAATGGGCTCTCCCAACGGTGCAGCACCTGCGATGGTGGTGCCGATC
GGTAGTGGTGGAGGGGGAGGACGAACGCCTCCCTCGCGTTCTCCTGGAGG
GGATCGAGGCCCTCCTCCTCGGTCTCCTCCAAAAATTTCATCCCGAAATT
CTCCACTACCACCGCCGCCGCCGCCGACAGTGCCAGGCACAGAAATGGCA
AGTGAGTGGGCTTGTCCGGCGTGTACGTTCTTCAATGCCCCGCATATGAG
TGTGTGTCAGATTTGTGGGCATCGAAATTAGGAGGGAAACGAAAACAAAA
GAAGGAGAGGAAAGGGTCACAGTGGATAATAGTTGTAGAGGTAACTAGAG
AAGTTGGAGTATGAGAAGAATGAATCGTTTGTCTTCTTCCTTGTGGGACG
AGGAATGGACCAAGACGGACAATCTTTGGGTGAAGAAGGAAAAGGCGGCA
TGGAGGAACATGAATGAATACCTGGATGGCAGGGAAATAAGTAAAATGAA
TATGCAAAATAACCTACGGGCTTGAGATAGAAATAAGTAACAGGCAAAAA
ATGCATAAACTCAAAAGACCGGGGTAACGGCTCTCATGTCTCAAAGGAAG
TCTTGAATCATGCAATGTTTCTTTGCCTTTCTATCGCTCTATATGTAACA
TGCTTTTAATGTCTTGATTCTCTACCAAAGACTAGTCCTAGCCCCCTTCC
TCCACCTCTTCTTCCTCCCCCTCCGTCACAATCTCAATCTCTCCCGTCGC
CAAGGCCATAATACCTTGAAACAAGAGAAAGAATCCGACAACCCCACCAA
CCACCGTCAACCAAATCACATTCTCCTTGTGCCTCGCCCGTTCCTCTTCC
AATTCCTCCGCCTTCTTCCCCCCTTCCGGGCCAGCAGCCGTTGTGCCTGC
TTGTTTCTTTCCAACCCCACCGACGCCGCCTTTTGGCCCTTCACCTTCTT
CTAAGAATTTGTGAAGCATTGGCTCGGGGACTAAGGGGGCCTCAGCGCAC
AATTTAGCGGCTTTAACTTGATTGAATGGGTTGCGGCTGTTGACGTAGTC
GGCGCGTTTGTAATACTCCTTTACATTGGACGCCACCACAAAACCTTGCT
GTTGCTGCTGCTCTGCAGAAGAGGCTACTGTTGCACTTCCAATCTCAAAA
AACTCCTCGGCAATACGTCTGAAAAAACGCATGAGATTTCCAAACGTACT
CACTATCACCAAAACATTCACATCGGCCAACGCTTCTACTAGGTGCCCGA
ATAAACACGCATCAAAACTCGTAGGTTCTCGTCCAAAGAAGAAATCCCCC
GTACTTGCCCCCAGCCAGTTATCCAACTCACGATATACGACACGCGCTCT
CGCCAACAGCTCCCCCAGACCCACCCCTCCCTCCAC back to topCoding sequence (CDS) from alignment at scaffold_12:308809..311844- >mRNA_5043 ID=mRNA_5043|Name=jgi.p|Nanoce1779_2|591209|organism=Nannochloropsis oceanica|type=CDS|length=3528bp|location=Sequence derived from alignment at scaffold_12:308809..311844- (Nannochloropsis oceanica)
ATCATCAAAAACAGTTGGGGTAGGCGCTGGGGTTCCTCTGGCTACGGACT
GATCGCCCGCGGGATAGGGAAATGCGGCGTGAGCAATATGGAGGAGTATG
GTTATTATGCTGCTGGAGGTATTGCTTTTGTGAATGGGACGGGTTTTTTC
AGTGATGATGCCTTGGCACAAGACCCGAATGTCGGTTTCTTCGATCAGAT
TTTACAGTGGAAATACCTAAGTGTTGTCTTGGGCATTGCGATCGCTCTAT
TGGCGTTCCCGATTATCATGTCATTCTTACGCGCGTTACACCGATGCTGT
TGCGGGGCACCAGCAGGAGGAAAAGGAAGAGGGAGGGGAGGGCGGCAAAT
GGGCTCTCCCAACGGTGCAGCACCTGCGATGGTGGTGCCGATCGGTAGTG
GTGGAGGGGGAGGACGAACGCCTCCCTCGCGTTCTCCTGGAGGGGATCGA
GGCCCTCCTCCTCGGTCTCCTCCAAAAATTTCATCCCGAAATTCTCCACT
ACCACCGCCGCCGCCGCCGACAGTGCCAGGCACAGAAATGGCAAGTGAGT
GGGCTTGTCCGGCGTGTACGTTCTTCAATGCCCCGCATATGAGTGTGTGT
CAGATTTGTGGGCATCGAAATTAGATGCAGGCCTTTGCAGGCCCATGCTG
GAGCCAGACCCCTGGCGGTTGCGCCACAACACCTCGCATCGCCTCCTTCG
GTGTCCACCTCGTCGTCTGTTTCGCGCTCCTATTTGCAGCTCCAAGACTG
GTCACATCATCGTCGTCAATATCACCACCAAGTGGCAGCAGCAGCAACGG
CAGCATAACTGCACCGTGTAGCCTGGAGAACTTCGAGGCATTTTGCGAGG
AGTTCCACAAGGACTACACCGCCAACCCAAAAGAGCTAGCCCGGCGCTTC
CAGGCCTGGAGCAAGTCCTGTATTTATTTGGAAAATTATAAAGTGGAGCA
TCCTGACGCCTCTTTTCACATGGCTTACAATCACCTGAGTGACCGCTTGC
CAGAGGAACACGAGGCCATGTTCGGGTACAAGGTGAAGCCGCGGGCAGGG
CGTGTCACGCCTTCTTCTCTCTCTGACAGTATCAACAACATTACCCACCG
AGGCCTGCAAGGTTTCCACAAACACGAGCGGTCCGAAGAGGATGCAAAAG
AAGAAGCAGCCGACGGCACGTATCCCGTCCCTCCCGAGTGGGCGAAGGAG
CTCATGCCCCGAGACTTACCCGCTGCTGTGGACTGGCGGGTGGCCAAACT
AAACCCTGATAATGTTGTTGCCGTGACACCTGTCAAAAATCAAGCTGCCT
GTGGTGCTTGTTGGGCGTTTACGACAGCCGCGGCGGTGGAGGGAGCGGTG
GCGGTCACAACGAAAGTTCTAAATGAATTGAGTAATCAGCAATTGATTGA
TTGTGTGAAGCAGAATGAGGGGTGTAACGGCGGAGATTTTGACTACGCAT
TCAAGTGGGTCGCGCAGAAAGGCTTGGCGTCTTCATCAGATTACACATTT
ACTCAAAGCCAGGGAAAATGTCGGGCGAATGAATTCGCGGTCGCCTCGCA
GATCAAAGATGCATATGAGACGGCTCCGTGCAGTAAGAATGGGTTAATGA
GCATCGTGGCACGCCGGCCTGTGGCTGTTGCCATTGATGGATCTTGTGAG
GCATTTGTTCAGTATCGGGGAGGGATATACACGGAGAATTGTGGGACTGA
TCTGAATCATGCGGTGACGATTGTGGGGTATGGAACGGATGAAAAGTCGG
GAACTGATTACTGGATCATCAAAAACAGTTGGGGTAGGCGCTGGGGTTCC
TCTGGCTACGGACTGATCGCCCGCGGGATAGGGAAATGCGGCGTGAGCAA
TATGGAGGAGTATGGTTATTATGCTGCTGGAGGTATTGCTTTTGTGAATG
GGACGGGTTTTTTCAGTGATGATGCCTTGGCACAAGACCCGAATGTCGGT
TTCTTCGATCAGATTTTACAGTGGAAATACCTAAGTGTTGTCTTGGGCAT
TGCGATCGCTCTATTGGCGTTCCCGATTATCATGTCATTCTTACGCGCGT
TACACCGATGCTGTTGCGGGGCACCAGCAGGAGGAAAAGGAAGAGGGAGG
GGAGGGCGGCAAATGGGCTCTCCCAACGGTGCAGCACCTGCGATGGTGGT
GCCGATCGGTAGTGGTGGAGGGGGAGGACGAACGCCTCCCTCGCGTTCTC
CTGGAGGGGATCGAGGCCCTCCTCCTCGGTCTCCTCCAAAAATTTCATCC
CGAAATTCTCCACTACCACCGCCGCCGCCGCCGACAGTGCCAGGCACAGA
AATGGCAAGTGAGTGGGCTTGTCCGGCGTGTACGTTCTTCAATGCCCCGC
ATATGAGTGTGTGTCAGATTTGTGGGCATCGAAATTAGATGCAGGCCTTT
GCAGGCCCATGCTGGAGCCAGACCCCTGGCGGTTGCGCCACAACACCTCG
CATCGCCTCCTTCGGTGTCCACCTCGTCGTCTGTTTCGCGCTCCTATTTG
CAGCTCCAAGACTGGTCACATCATCGTCGTCAATATCACCACCAAGTGGC
AGCAGCAGCAACGGCAGCATAACTGCACCGTGTAGCCTGGAGAACTTCGA
GGCATTTTGCGAGGAGTTCCACAAGGACTACACCGCCAACCCAAAAGAGC
TAGCCCGGCGCTTCCAGGCCTGGAGCAAGTCCTGTATTTATTTGGAAAAT
TATAAAGTGGAGCATCCTGACGCCTCTTTTCACATGGCTTACAATCACCT
GAGTGACCGCTTGCCAGAGGAACACGAGGCCATGTTCGGGTACAAGGTGA
AGCCGCGGGCAGGGCGTGTCACGCCTTCTTCTCTCTCTGACAGTATCAAC
AACATTACCCACCGAGGCCTGCAAGGTTTCCACAAACACGAGCGGTCCGA
AGAGGATGCAAAAGAAGAAGCAGCCGACGGCACGTATCCCGTCCCTCCCG
AGTGGGCGAAGGAGCTCATGCCCCGAGACTTACCCGCTGCTGTGGACTGG
CGGGTGGCCAAACTAAACCCTGATAATGTTGTTGCCGTGACACCTGTCAA
AAATCAAGCTGCCTGTGGTGCTTGTTGGGCGTTTACGACAGCCGCGGCGG
TGGAGGGAGCGGTGGCGGTCACAACGAAAGTTCTAAATGAATTGAGTAAT
CAGCAATTGATTGATTGTGTGAAGCAGAATGAGGGGTGTAACGGCGGAGA
TTTTGACTACGCATTCAAGTGGGTCGCGCAGAAAGGCTTGGCGTCTTCAT
CAGATTACACATTTACTCAAAGCCAGGGAAAATGTCGGGCGAATGAATTC
GCGGTCGCCTCGCAGATCAAAGATGCATATGAGACGGCTCCGTGCAGTAA
GAATGGGTTAATGAGCATCGTGGCACGCCGGCCTGTGGCTGTTGCCATTG
ATGGATCTTGTGAGGCATTTGTTCAGTATCGGGGAGGGATATACACGGAG
AATTGTGGGACTGATCTGAATCATGCGGTGACGATTGTGGGGTATGGAAC
GGATGAAAAGTCGGGAACTGATTACTGG back to top
|