jgi.p|Nanoce1779_2|529104, mRNA_5042 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529104
Unique NamemRNA_5042
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length726
Alignment locationscaffold_12:308782..309507 +

Link to JBrowse

Properties
Property NameValue
TranscriptId529190
TrackFilteredModels2
ProteinId529104
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:308782..309507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529104gene_5042Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529104mRNA_5042-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5042CDS_5042Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5042 ID=mRNA_5042|Name=jgi.p|Nanoce1779_2|529104|organism=Nannochloropsis oceanica|type=mRNA|length=726bp
ATGGCGGAGCAACGCTGGAGGGGGCTGGTGGAGGGAGGGGTGGGTCTGGG
GGAGCTGTTGGCGAGAGCGCGTGTCGTATATCGTGAGTTGGATAACTGGC
TGGGGGCAAGTACGGGGGATTTCTTCTTTGGACGAGAACCTACGAGTTTT
GATGCGTGTTTATTCGGGCACCTAGTAGAAGCGTTGGCCGATGTGAATGT
TTTGGTGATAGTGAGTACGTTTGGAAATCTCATGCGTTTTTTCAGACGTA
TTGCCGAGGAGTTTTTTGAGATTGGAAGTGCAACAGTAGCCTCTTCTGCA
GAGCAGCAGCAACAGCAAGGTTTTGTGGTGGCGTCCAATGTAAAGGAGTA
TTACAAACGCGCCGACTACGTCAACAGCCGCAACCCATTCAATCAAGTTA
AAGCCGCTAAATTGTGCGCTGAGGCCCCCTTAGTCCCCGAGCCAATGCTT
CACAAATTCTTAGAAGAAGGTGAAGGGCCAAAAGGCGGCGTCGGTGGGGT
TGGAAAGAAACAAGCAGGCACAACGGCTGCTGGCCCGGAAGGGGGGAAGA
AGGCGGAGGAATTGGAAGAGGAACGGGCGAGGCACAAGGAGAATGTGATT
TGGTTGACGGTGGTTGGTGGGGTTGTCGGATTCTTTCTCTTGTTTCAAGG
TATTATGGCCTTGGCGACGGGAGAGATTGAGATTGTGACGGAGGGGGAGG
AAGAAGAGGTGGAGGAAGGGGGCTAG
back to top

protein sequence of jgi.p|Nanoce1779_2|529104

>mRNA_5042-protein ID=mRNA_5042-protein|Name=jgi.p|Nanoce1779_2|529104|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MAEQRWRGLVEGGVGLGELLARARVVYRELDNWLGASTGDFFFGREPTSF
DACLFGHLVEALADVNVLVIVSTFGNLMRFFRRIAEEFFEIGSATVASSA
EQQQQQGFVVASNVKEYYKRADYVNSRNPFNQVKAAKLCAEAPLVPEPML
HKFLEEGEGPKGGVGGVGKKQAGTTAAGPEGGKKAEELEEERARHKENVI
WLTVVGGVVGFFLLFQGIMALATGEIEIVTEGEEEEVEEGG*
back to top

mRNA from alignment at scaffold_12:308782..309507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5042 ID=mRNA_5042|Name=jgi.p|Nanoce1779_2|529104|organism=Nannochloropsis oceanica|type=mRNA|length=726bp|location=Sequence derived from alignment at scaffold_12:308782..309507+ (Nannochloropsis oceanica)
ATGGCGGAGCAACGCTGGAGGGGGCTGGTGGAGGGAGGGGTGGGTCTGGG
GGAGCTGTTGGCGAGAGCGCGTGTCGTATATCGTGAGTTGGATAACTGGC
TGGGGGCAAGTACGGGGGATTTCTTCTTTGGACGAGAACCTACGAGTTTT
GATGCGTGTTTATTCGGGCACCTAGTAGAAGCGTTGGCCGATGTGAATGT
TTTGGTGATAGTGAGTACGTTTGGAAATCTCATGCGTTTTTTCAGACGTA
TTGCCGAGGAGTTTTTTGAGATTGGAAGTGCAACAGTAGCCTCTTCTGCA
GAGCAGCAGCAACAGCAAGGTTTTGTGGTGGCGTCCAATGTAAAGGAGTA
TTACAAACGCGCCGACTACGTCAACAGCCGCAACCCATTCAATCAAGTTA
AAGCCGCTAAATTGTGCGCTGAGGCCCCCTTAGTCCCCGAGCCAATGCTT
CACAAATTCTTAGAAGAAGGTGAAGGGCCAAAAGGCGGCGTCGGTGGGGT
TGGAAAGAAACAAGCAGGCACAACGGCTGCTGGCCCGGAAGGGGGGAAGA
AGGCGGAGGAATTGGAAGAGGAACGGGCGAGGCACAAGGAGAATGTGATT
TGGTTGACGGTGGTTGGTGGGGTTGTCGGATTCTTTCTCTTGTTTCAAGG
TATTATGGCCTTGGCGACGGGAGAGATTGAGATTGTGACGGAGGGGGAGG
AAGAAGAGGTGGAGGAAGGGGGCTAG
back to top

Coding sequence (CDS) from alignment at scaffold_12:308782..309507+

>mRNA_5042 ID=mRNA_5042|Name=jgi.p|Nanoce1779_2|529104|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_12:308782..309507+ (Nannochloropsis oceanica)
ATGGCGGAGCAACGCTGGAGGGGGCTGGTGGAGGGAGGGGTGGGTCTGGG
GGAGCTGTTGGCGAGAGCGCGTGTCGTATATCGTGAGTTGGATAACTGGC
TGGGGGCAAGTACGGGGGATTTCTTCTTTGGACGAGAACCTACGAGTTTT
GATGCGTGTTTATTCGGGCACCTAGTAGAAGCGTTGGCCGATGTGAATGT
TTTGGTGATAGTGAGTACGTTTGGAAATCTCATGCGTTTTTTCAGACGTA
TTGCCGAGGAGTTTTTTGAGATTGGAAGTGCAACAGTAGCCTCTTCTGCA
GAGCAGCAGCAACAGCAAGGTTTTGTGGTGGCGTCCAATGTAAAGGAGTA
TTACAAACGCGCCGACTACGTCAACAGCCGCAACCCATTCAATCAAGTTA
AAGCCGCTAAATTGTGCGCTGAGGCCCCCTTAGTCCCCGAGCCAATGCTT
CACAAATTCTTAGAAGAAGGTGAAGGGCCAAAAGGCGGCGTCGGTGGGGT
TGGAAAGAAACAAGCAGGCACAACGGCTGCTGGCCCGGAAGGGGGGAAGA
AGGCGGAGGAATTGGAAGAGGAACGGGCGAGGCACAAGGAGAATGTGATT
TGGTTGACGGTGGTTGGTGGGGTTGTCGGATTCTTTCTCTTGTTTCAAGG
TATTATGGCCTTGGCGACGGGAGAGATTGAGATTGTGACGGAGGGGGAGG
AAGAAGAGGTGGAGGAAGGGGGCTAG
back to top
Synonyms
Publications