jgi.p|Nanoce1779_2|520397, mRNA_5041 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|520397
Unique NamemRNA_5041
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length309
Alignment locationscaffold_12:308248..308556 +

Link to JBrowse

Properties
Property NameValue
TranscriptId520483
TrackFilteredModels2
ProteinId520397
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:308248..308556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|520397gene_5041Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|520397mRNA_5041-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5041CDS_5041Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5041 ID=mRNA_5041|Name=jgi.p|Nanoce1779_2|520397|organism=Nannochloropsis oceanica|type=mRNA|length=309bp
ATGTTCTCCTCCGCTGACTTCTTCGAAAGCGACTTCTCCAAGAACCCCCT
AGGCGCACATACCTCCTCCCTTTGCCCTGGACACGCTGTCGACCCCAACC
CCATCAAAGCCCACGCCGAGGGAAAACAACCGCTCATCCTCCTCCAATTT
CGCCCAGCATTTGCTCTGCAACTCTACCTGCGTTTCGTTCGCGCCCCCTA
CGTGGTGCGAAATCTCGAATACCCATTCCTCGAGACGGCCGGTCGCCTCC
CCGTATTGATAGATGGGCAATTTATTATACCTGAAGACGATGCGTTGGCA
TATCTTCGC
back to top

protein sequence of jgi.p|Nanoce1779_2|520397

>mRNA_5041-protein ID=mRNA_5041-protein|Name=jgi.p|Nanoce1779_2|520397|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MFSSADFFESDFSKNPLGAHTSSLCPGHAVDPNPIKAHAEGKQPLILLQF
RPAFALQLYLRFVRAPYVVRNLEYPFLETAGRLPVLIDGQFIIPEDDALA
YLR
back to top

mRNA from alignment at scaffold_12:308248..308556+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5041 ID=mRNA_5041|Name=jgi.p|Nanoce1779_2|520397|organism=Nannochloropsis oceanica|type=mRNA|length=309bp|location=Sequence derived from alignment at scaffold_12:308248..308556+ (Nannochloropsis oceanica)
ATGTTCTCCTCCGCTGACTTCTTCGAAAGCGACTTCTCCAAGAACCCCCT
AGGCGCACATACCTCCTCCCTTTGCCCTGGACACGCTGTCGACCCCAACC
CCATCAAAGCCCACGCCGAGGGAAAACAACCGCTCATCCTCCTCCAATTT
CGCCCAGCATTTGCTCTGCAACTCTACCTGCGTTTCGTTCGCGCCCCCTA
CGTGGTGCGAAATCTCGAATACCCATTCCTCGAGACGGCCGGTCGCCTCC
CCGTATTGATAGATGGGCAATTTATTATACCTGAAGACGATGCGTTGGCA
TATCTTCGC
back to top

Coding sequence (CDS) from alignment at scaffold_12:308248..308556+

>mRNA_5041 ID=mRNA_5041|Name=jgi.p|Nanoce1779_2|520397|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_12:308248..308556+ (Nannochloropsis oceanica)
ATGTTCTCCTCCGCTGACTTCTTCGAAAGCGACTTCTCCAAGAACCCCCT
AGGCGCACATACCTCCTCCCTTTGCCCTGGACACGCTGTCGACCCCAACC
CCATCAAAGCCCACGCCGAGGGAAAACAACCGCTCATCCTCCTCCAATTT
CGCCCAGCATTTGCTCTGCAACTCTACCTGCGTTTCGTTCGCGCCCCCTA
CGTGGTGCGAAATCTCGAATACCCATTCCTCGAGACGGCCGGTCGCCTCC
CCGTATTGATAGATGGGCAATTTATTATACCTGAAGACGATGCGTTGGCA
TATCTTCGC
back to top
Synonyms
Publications