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Properties
| Property Name | Value |
|---|
| TranscriptId | 243904 |
| Track | FilteredModels2 |
| ProteinId | 243818 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1221035..1223478 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_504 ID=mRNA_504|Name=jgi.p|Nanoce1779_2|243818|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp
GTGGTGATCATCCCGGTCTCTGTCCATCACCAGCAGCCTCTCTTCCCCTT
CGGCTCCCGAAGTGACCGAACCGCCTCTGCGCCTCTGCGCCTCAGTCAGG
CTTTTCCATCATCATGCCTGGTCGAACGAAGAAGACCTCCGAAAGCGGAA
AGTATGGCCGACGTGGGCCCAACGCTGCCGTCTCTGCCTTTGGTGGCAAC
GATTCGGACGGGAACACGAGCAGCAGTAGCGACAACGCCACCCCTTCCTC
CTCCCCCTCAACTTCTTCGCCGCCGTCCTGGTCCAGCCATTCCCATGAGT
CTAGCGTCACCACCATTGCGACTATGATGCCCCCCATCGCCAGCACCGCC
AGCACGAGCAGCACGAGCAGCACCAGCCCCATGAGCAGCAGCAGCAGCAG
CGGCAGCAGCGGCAGCAAACGCGAATCCTCCTCTTCCTCTCATCACCATC
AGTCCACCACCACCACCTCCTCCTCCTCTTCCCTTCTCCGCGAGTCCCCC
GGGCGTTGGAATGAGGCAGAACATCTACTCTTCCTTCGAGGCCTTGAGAT
CTACGGCAAGTCCTGGAAGAAAATCTCCCAAATTGTCAAAACCCGCACCG
TGGTTCAAATCCGAACCCATGCTCAAAAATACCTGATCAAAATAGAAAAG
GCCAAGAAGCTTGGGTTGACGGGAACGGTGATGATGAACGGAAAGGCAAT
TACGTCTTCTACCAAGGGAGGAAGGGCAGGGGCGGGGGGAGGGGGTGGAT
ATAAGGGGGAAGGATGGGGAGGGGGCGCGAAGGGCCTCAAGTCTGAGTCT
CTCCCTCACGTCATTTCAACTCATCATAGTGAGAGCAGCAGGAGCCATAA
TACCAATAGCGGCAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGTAAGCAACGTGGCAAGATCTCTTCCTCTTCTTCCATCTCT
CCCGTTTACCTCGAGGAGGATGACAGCCTCCTCCTAGGCGCCAGCTCTCT
CATGCCCGGCTCCACCAGCAATAACAGCAGCATTGCCATGAATAACAATA
ACGGCAACAACTACGCGCTGTACGTTGAAGGGGCTGACGTCCTGTACTCG
TCCTTCTCCTCCGGGTCGTCGTCTGGTGGTGCCACCTCTTCCTCCGCCTC
GTCTTCTGACTCCTCCTCTGCGCCGCACTCGCCTATGGTGAGCGGGGGGG
AGGAACAGCATCATCACCACCCCCATGACCAGCAACAATACAGGCAGGAT
GACGACGACGAGCACTACCATCACGATCACGCCTACGCTGAGGAGAAGCA
CGAGAGGGAGGCTGAGGAAGGAGGAGGGGGGGAAGAGGGGGAAGAGGGGC
ACCATCCCATGGATTCAGAGTTTGCCTGCTTATTGTTTAGTAATGAGCCT
CACTTTCACCAGGATAAAGCTGCGGAGCACGCAGCCCTCCTCCTTGACCA
GCATCACGACTCCCAGATTCAGCAGCAGCATCACCTTGAGGGGCAACAAC
AACAACAACTAGAAGAGCTACAGGAACGTAATCATTCATCATCGCAGCAG
CAGCAGCAGCAGCAGCAGCGATACCAACAACAGCAGCAACGACAGCAGCA
GCAGCAGCAGCAGCACATCAACAACAACAGCAGCAGCAGCAGCATCAGAT
GCAGCAGCAACAGCAGGCCTTGGACGACTTCACACAATTGAACAACGCTT
GGCTCAGCCACGAGGGCGGACCTGAGGGCGGGGG back to topprotein sequence of jgi.p|Nanoce1779_2|243818 >mRNA_504-protein ID=mRNA_504-protein|Name=jgi.p|Nanoce1779_2|243818|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MPGRTKKTSESGKYGRRGPNAAVSAFGGNDSDGNTSSSSDNATPSSSPST
SSPPSWSSHSHESSVTTIATMMPPIASTASTSSTSSTSPMSSSSSSGSSG
SKRESSSSSHHHQSTTTTSSSSSLLRESPGRWNEAEHLLFLRGLEIYGKS
WKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSST
KGGRAGAGGGGGYKGEGWGGGAKGLKSESLPHVISTHHSESSRSHNTNSG
RCSSSSSSSSSSSSSSKQRGKISSSSSISPVYLEEDDSLLLGASSLMPGS
TSNNSSIAMNNNNGNNYALYVEGADVLYSSFSSGSSSGGATSSSASSSDS
SSAPHSPMVSGGEEQHHHHPHDQQQYRQDDDDEHYHHDHAYAEEKHEREA
EEGGGGEEGEEGHHPMDSEFACLLFSNEPHFHQDKAAEHAALLLDQHHDS
QIQQQHHLEGQQQQQLEELQERNHSSSQQQQQQQQRYQQQQQRQQQQQQQ
HINNNSSSSSIRCSSNSRPWTTSHN* back to topmRNA from alignment at scaffold_3:1221035..1223478- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_504 ID=mRNA_504|Name=jgi.p|Nanoce1779_2|243818|organism=Nannochloropsis oceanica|type=mRNA|length=2444bp|location=Sequence derived from alignment at scaffold_3:1221035..1223478- (Nannochloropsis oceanica)
GTGGTGATCATCCCGGTCTCTGTCCATCACCAGCAGCCTCTCTTCCCCTT
CGGCTCCCGAAGTGACCGAACCGCCTCTGCGCCTCTGCGCCTCAGTCAGG
CTTTTCCATCATCATGCCTGGTCGAACGAAGAAGGTGCGTACACATTGAT
CGGAGTGCTCTTTGGGCTCTGTGCAAATCCATTAACCTACTTTTGTGTTG
ATGTGTATGCTTGACACACGGCTCAATCAATGCTCACCTCTCCCACCCCG
CTCTTCTCCCCTCGCCCTCCGTTGCGAGGCCTTGTTCACGCAAGCACGCC
TGTTCATCATTCCCTCCGTTTCTCTTTGCTCCCCTTTAATCAATAGCGCA
TGCATGCTCATGACAACCCTTCTCTCGCACCATTTCATAATTTACATAGC
CTCCCCTCTCCTGTGCATGCAGACGTCCGTTTGTTTCCTCGCTTGCCCTT
CCCTTGGTTGCTTTCCGCTGTTCAGTTTTCTTCTTTTACCAAACCCGCCA
GCCATCTTTTTTACCAGCCCTGCCTCCTCTCCACCCCCTCTCCTCACTCC
TTCCCATTCCTCAATAACAATAGACCTCCGAAAGCGGAAAGTATGGCCGA
CGTGGGCCCAACGCTGCCGTCTCTGCCTTTGGTGGCAACGATTCGGACGG
GAACACGAGCAGCAGTAGCGACAACGCCACCCCTTCCTCCTCCCCCTCAA
CTTCTTCGCCGCCGTCCTGGTCCAGCCATTCCCATGAGTCTAGCGTCACC
ACCATTGCGACTATGATGCCCCCCATCGCCAGCACCGCCAGCACGAGCAG
CACGAGCAGCACCAGCCCCATGAGCAGCAGCAGCAGCAGCGGCAGCAGCG
GCAGCAAACGCGAATCCTCCTCTTCCTCTCATCACCATCAGTCCACCACC
ACCACCTCCTCCTCCTCTTCCCTTCTCCGCGAGTCCCCCGGGCGTTGGAA
TGAGGCAGAACATCTACTCTTCCTTCGAGGCCTTGAGATCTACGGCAAGT
CCTGGAAGAAAATCTCCCAAATTGTCAAAACCCGCACCGTGGTTCAAATC
CGAACCCATGCTCAAAAATACCTGATCAAAATAGAAAAGGCCAAGAAGCT
TGGGTTGACGGGAACGGTGATGATGAACGGAAAGGCAATTACGTCTTCTA
CCAAGGGAGGAAGGGCAGGGGCGGGGGGAGGGGGTGGATATAAGGGGGAA
GGATGGGGAGGGGGCGCGAAGGGCCTCAAGTCTGAGTCTCTCCCTCACGT
CATTTCAACTCATCATAGTGAGAGCAGCAGGAGCCATAATACCAATAGCG
GCAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
AAGCAACGTGGCAAGATCTCTTCCTCTTCTTCCATCTCTCCCGTTTACCT
CGAGGAGGATGACAGCCTCCTCCTAGGCGCCAGCTCTCTCATGCCCGGCT
CCACCAGCAATAACAGCAGCATTGCCATGAATAACAATAACGGCAACAAC
TACGCGCTGTACGTTGAAGGGGCTGACGTCCTGTACTCGTCCTTCTCCTC
CGGGTCGTCGTCTGGTGGTGCCACCTCTTCCTCCGCCTCGTCTTCTGACT
CCTCCTCTGCGCCGCACTCGCCTATGGTGAGCGGGGGGGAGGAACAGCAT
CATCACCACCCCCATGACCAGCAACAATACAGGCAGGATGACGACGACGA
GCACTACCATCACGATCACGCCTACGCTGAGGAGAAGCACGAGAGGGAGG
CTGAGGAAGGAGGAGGGGGGGAAGAGGGGGAAGAGGGGCACCATCCCATG
GATTCAGAGTTTGCCTGCTTATTGTTTAGTAATGAGCCTCACTTTCACCA
GGATAAAGCTGCGGAGCACGCAGCCCTCCTCCTTGACCAGCATCACGACT
CCCAGATTCAGCAGCAGCATCACCTTGAGGGGCAACAACAACAACAACTA
GAAGAGCTACAGGAACGTAATCATTCATCATCGCAGCAGCAGCAGCAGCA
GCAGCAGCGATACCAACAACAGCAGCAACGACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAACAACAACAACAACAA
CAACAACAACAACAACAAGGACAGGTGCACTACGCATCGACAATTCAGCA
GCGACAACCCCAGCATCTCTCCCTGCCTATCCCCGCCTCCCGCTCTTCCT
CCCTTCTCGCCTCCTCCTCCTCTTCCATCACTGCCACTCTCGGCGGCCGA
CCAAAGCCACAACAGCATTTTTACCAACAAAAGCAACACCACCACCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCATCAACAACAACAGCAGCAGCAGC
AGCATCAGATGCAGCAGCAACAGCAGGCCTTGGACGACTTCACACAATTG
AACAACGCTTGGCTCAGCCACGAGGGCGGACCTGAGGGCGGGGG back to topCoding sequence (CDS) from alignment at scaffold_3:1221035..1223478- >mRNA_504 ID=mRNA_504|Name=jgi.p|Nanoce1779_2|243818|organism=Nannochloropsis oceanica|type=CDS|length=4734bp|location=Sequence derived from alignment at scaffold_3:1221035..1223478- (Nannochloropsis oceanica)
CATCAACAACAACAGCAGCAGCAGCAGCATCAGATGCAGCAGCAACAGCA
GGCCTTGGACGACTTCACACAATTGAACCTCCGAAAGCGGAAAGTATGGC
CGACGTGGGCCCAACGCTGCCGTCTCTGCCTTTGGTGGCAACGATTCGGA
CGGGAACACGAGCAGCAGTAGCGACAACGCCACCCCTTCCTCCTCCCCCT
CAACTTCTTCGCCGCCGTCCTGGTCCAGCCATTCCCATGAGTCTAGCGTC
ACCACCATTGCGACTATGATGCCCCCCATCGCCAGCACCGCCAGCACGAG
CAGCACGAGCAGCACCAGCCCCATGAGCAGCAGCAGCAGCAGCGGCAGCA
GCGGCAGCAAACGCGAATCCTCCTCTTCCTCTCATCACCATCAGTCCACC
ACCACCACCTCCTCCTCCTCTTCCCTTCTCCGCGAGTCCCCCGGGCGTTG
GAATGAGGCAGAACATCTACTCTTCCTTCGAGGCCTTGAGATCTACGGCA
AGTCCTGGAAGAAAATCTCCCAAATTGTCAAAACCCGCACCGTGGTTCAA
ATCCGAACCCATGCTCAAAAATACCTGATCAAAATAGAAAAGGCCAAGAA
GCTTGGGTTGACGGGAACGGTGATGATGAACGGAAAGGCAATTACGTCTT
CTACCAAGGGAGGAAGGGCAGGGGCGGGGGGAGGGGGTGGATATAAGGGG
GAAGGATGGGGAGGGGGCGCGAAGGGCCTCAAGTCTGAGTCTCTCCCTCA
CGTCATTTCAACTCATCATAGTGAGAGCAGCAGGAGCCATAATACCAATA
GCGGCAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGTAAGCAACGTGGCAAGATCTCTTCCTCTTCTTCCATCTCTCCCGTTTA
CCTCGAGGAGGATGACAGCCTCCTCCTAGGCGCCAGCTCTCTCATGCCCG
GCTCCACCAGCAATAACAGCAGCATTGCCATGAATAACAATAACGGCAAC
AACTACGCGCTGTACGTTGAAGGGGCTGACGTCCTGTACTCGTCCTTCTC
CTCCGGGTCGTCGTCTGGTGGTGCCACCTCTTCCTCCGCCTCGTCTTCTG
ACTCCTCCTCTGCGCCGCACTCGCCTATGGTGAGCGGGGGGGAGGAACAG
CATCATCACCACCCCCATGACCAGCAACAATACAGGCAGGATGACGACGA
CGAGCACTACCATCACGATCACGCCTACGCTGAGGAGAAGCACGAGAGGG
AGGCTGAGGAAGGAGGAGGGGGGGAAGAGGGGGAAGAGGGGCACCATCCC
ATGGATTCAGAGTTTGCCTGCTTATTGTTTAGTAATGAGCCTCACTTTCA
CCAGGATAAAGCTGCGGAGCACGCAGCCCTCCTCCTTGACCAGCATCACG
ACTCCCAGATTCAGCAGCAGCATCACCTTGAGGGGCAACAACAACAACAA
CTAGAAGAGCTACAGGAACGTAATCATTCATCATCGCAGCAGCAGCAGCA
GCAGCAGCAGCGATACCAACAACAGCAGCAACGACAGCAGCAGCAGCAGC
AGCAGCAATGCCTGGTCGAACGAAGAAGCATCAACAACAACAGCAGCAGC
AGCAGCATCAGATGCAGCAGCAACAGCAGGCCTTGGACGACTTCACACAA
TTGAACCTCCGAAAGCGGAAAGTATGGCCGACGTGGGCCCAACGCTGCCG
TCTCTGCCTTTGGTGGCAACGATTCGGACGGGAACACGAGCAGCAGTAGC
GACAACGCCACCCCTTCCTCCTCCCCCTCAACTTCTTCGCCGCCGTCCTG
GTCCAGCCATTCCCATGAGTCTAGCGTCACCACCATTGCGACTATGATGC
CCCCCATCGCCAGCACCGCCAGCACGAGCAGCACGAGCAGCACCAGCCCC
ATGAGCAGCAGCAGCAGCAGCGGCAGCAGCGGCAGCAAACGCGAATCCTC
CTCTTCCTCTCATCACCATCAGTCCACCACCACCACCTCCTCCTCCTCTT
CCCTTCTCCGCGAGTCCCCCGGGCGTTGGAATGAGGCAGAACATCTACTC
TTCCTTCGAGGCCTTGAGATCTACGGCAAGTCCTGGAAGAAAATCTCCCA
AATTGTCAAAACCCGCACCGTGGTTCAAATCCGAACCCATGCTCAAAAAT
ACCTGATCAAAATAGAAAAGGCCAAGAAGCTTGGGTTGACGGGAACGGTG
ATGATGAACGGAAAGGCAATTACGTCTTCTACCAAGGGAGGAAGGGCAGG
GGCGGGGGGAGGGGGTGGATATAAGGGGGAAGGATGGGGAGGGGGCGCGA
AGGGCCTCAAGTCTGAGTCTCTCCCTCACGTCATTTCAACTCATCATAGT
GAGAGCAGCAGGAGCCATAATACCAATAGCGGCAGGTGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAAGCAACGTGGCAAGATCT
CTTCCTCTTCTTCCATCTCTCCCGTTTACCTCGAGGAGGATGACAGCCTC
CTCCTAGGCGCCAGCTCTCTCATGCCCGGCTCCACCAGCAATAACAGCAG
CATTGCCATGAATAACAATAACGGCAACAACTACGCGCTGTACGTTGAAG
GGGCTGACGTCCTGTACTCGTCCTTCTCCTCCGGGTCGTCGTCTGGTGGT
GCCACCTCTTCCTCCGCCTCGTCTTCTGACTCCTCCTCTGCGCCGCACTC
GCCTATGGTGAGCGGGGGGGAGGAACAGCATCATCACCACCCCCATGACC
AGCAACAATACAGGCAGGATGACGACGACGAGCACTACCATCACGATCAC
GCCTACGCTGAGGAGAAGCACGAGAGGGAGGCTGAGGAAGGAGGAGGGGG
GGAAGAGGGGGAAGAGGGGCACCATCCCATGGATTCAGAGTTTGCCTGCT
TATTGTTTAGTAATGAGCCTCACTTTCACCAGGATAAAGCTGCGGAGCAC
GCAGCCCTCCTCCTTGACCAGCATCACGACTCCCAGATTCAGCAGCAGCA
TCACCTTGAGGGGCAACAACAACAACAACTAGAAGAGCTACAGGAACGTA
ATCATTCATCATCGCAGCAGCAGCAGCAGCAGCAGCAGCGATACCAACAA
CAGCAGCAACGACAGCAGCAGCAGCAGCAGCAGCAATGCCTGGTCGAACG
AAGAAGCATCAACAACAACAGCAGCAGCAGCAGCATCAGATGCAGCAGCA
ACAGCAGGCCTTGGACGACTTCACACAATTGAACCTCCGAAAGCGGAAAG
TATGGCCGACGTGGGCCCAACGCTGCCGTCTCTGCCTTTGGTGGCAACGA
TTCGGACGGGAACACGAGCAGCAGTAGCGACAACGCCACCCCTTCCTCCT
CCCCCTCAACTTCTTCGCCGCCGTCCTGGTCCAGCCATTCCCATGAGTCT
AGCGTCACCACCATTGCGACTATGATGCCCCCCATCGCCAGCACCGCCAG
CACGAGCAGCACGAGCAGCACCAGCCCCATGAGCAGCAGCAGCAGCAGCG
GCAGCAGCGGCAGCAAACGCGAATCCTCCTCTTCCTCTCATCACCATCAG
TCCACCACCACCACCTCCTCCTCCTCTTCCCTTCTCCGCGAGTCCCCCGG
GCGTTGGAATGAGGCAGAACATCTACTCTTCCTTCGAGGCCTTGAGATCT
ACGGCAAGTCCTGGAAGAAAATCTCCCAAATTGTCAAAACCCGCACCGTG
GTTCAAATCCGAACCCATGCTCAAAAATACCTGATCAAAATAGAAAAGGC
CAAGAAGCTTGGGTTGACGGGAACGGTGATGATGAACGGAAAGGCAATTA
CGTCTTCTACCAAGGGAGGAAGGGCAGGGGCGGGGGGAGGGGGTGGATAT
AAGGGGGAAGGATGGGGAGGGGGCGCGAAGGGCCTCAAGTCTGAGTCTCT
CCCTCACGTCATTTCAACTCATCATAGTGAGAGCAGCAGGAGCCATAATA
CCAATAGCGGCAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGTAAGCAACGTGGCAAGATCTCTTCCTCTTCTTCCATCTCTCC
CGTTTACCTCGAGGAGGATGACAGCCTCCTCCTAGGCGCCAGCTCTCTCA
TGCCCGGCTCCACCAGCAATAACAGCAGCATTGCCATGAATAACAATAAC
GGCAACAACTACGCGCTGTACGTTGAAGGGGCTGACGTCCTGTACTCGTC
CTTCTCCTCCGGGTCGTCGTCTGGTGGTGCCACCTCTTCCTCCGCCTCGT
CTTCTGACTCCTCCTCTGCGCCGCACTCGCCTATGGTGAGCGGGGGGGAG
GAACAGCATCATCACCACCCCCATGACCAGCAACAATACAGGCAGGATGA
CGACGACGAGCACTACCATCACGATCACGCCTACGCTGAGGAGAAGCACG
AGAGGGAGGCTGAGGAAGGAGGAGGGGGGGAAGAGGGGGAAGAGGGGCAC
CATCCCATGGATTCAGAGTTTGCCTGCTTATTGTTTAGTAATGAGCCTCA
CTTTCACCAGGATAAAGCTGCGGAGCACGCAGCCCTCCTCCTTGACCAGC
ATCACGACTCCCAGATTCAGCAGCAGCATCACCTTGAGGGGCAACAACAA
CAACAACTAGAAGAGCTACAGGAACGTAATCATTCATCATCGCAGCAGCA
GCAGCAGCAGCAGCAGCGATACCAACAACAGCAGCAACGACAGCAGCAGC
AGCAGCAGCAGCAATGCCTGGTCGAACGAAGAAG back to top
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