jgi.p|Nanoce1779_2|528928, mRNA_5036 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|528928
Unique Name	mRNA_5036
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1419
Alignment location	scaffold_12:295123..296637 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	529014
Track	FilteredModels2
ProteinId	528928

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:295123..296637 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528928	gene_5036	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528928	mRNA_5036-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5036	CDS_5036	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:295123..296637-
coding sequence from alignment at scaffold_12:295123..296637-

mRNA sequence

>mRNA_5036 ID=mRNA_5036|Name=jgi.p|Nanoce1779_2|528928|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp
ATGACACGGCGACAAGCTTTGCCTGAAGATCATGAAGGAGACACACAAGG
CAAATATGGGGGCTATGCGAGTGATAGTGAGGAGGAAGCAAGCTGGTCCT
GGCCGGAAAGCGCCGAGTATTACGAATACGTGTACGAGCGGCAGTACGAA
GCGGGAATCGGATTTCCGCCGTTGGTGACCCGCGAGAACCGGACATGGAA
GGAAAAAAGTCGACGAGGGTTTCACCTGCACATTGGTGCGGGCCGGCTTG
GGCTGGGCCTTGTCATACCGGCCGTTTCTAGAAGCAAAACCCCGATGGGG
GTATTGCAGCGTCCGTCGGATGCGTGGGCACCACTGATGGACACGAAGCG
AATGGATATTATGGTGAATGGCGAAACTGTTTTAAAGGACATGATAGTGG
TGAGGGACCTGACTGAATTGCCTGACTGGGACGAACGCCGCCCGAACCTG
TTCGCACTCTCAGAAGACCCGATTTTGTTGCAGATTCTTGTGAGGACTGC
CACGTCATTTAGCATGAGCCTGGGCCCATTCATGAAGGATGTTATCCCCC
TGTTGTCTACGCTACCATTACAGGAAGAGGCGGACAACCCCGCTGACTTC
ATTGCCCCTATTTTATACGCGGCTGAGAACGATCATAAAATGGTGGAGGA
GGTGGCTGACGCTCTAGCGGGACGCGTGGATGTGTGTACGGTGATGGTGG
ATAGAATATGTACTGATCGCAAAATCGGAGAATTGAGGGTCGAAGTGGCT
TGTGAGCCATATGAGGGTGAGATGGTGATTACTAGGGATCCGCGGCAATT
GCCCCCTCCCTTCTCGGGCGAGCATGTCCGCCTACCCTCCAAGCAGGAAC
AAGCCGAGTACTTCACGCAGAGGAAGTTTTTGTTGGTAAATGGGAGCCAT
ACTACCTTGGCGTTTCTGACCCTTTGCTTGAGACAGCCCATGCAAGCGGC
AAGCGCTGCGGGGGATCACGAGCTGATCAATTGGGCGAATTGTGGAGAGG
AGCTACACAAAGAGATATGGGCGTGGGCCGTGGCGAGGCTATTGATTTTG
CTGACTGCTTTCCCGACGACGGTTTTGATGGAGGCCCACGACGTGACGAC
CGAAGATGCTTTGTGCGATGTCTTGTTGGCTTACTCGAGGGAGACACTGA
CGAGGTTCGAGAGTACTAAGGATACTACCTCCAGGGTGTTGCAGGGGGGG
GTAGCAAATCGGTGGGAGACACGGTTGAAAACAGTTGATAGGTTCTTGAA
GCCGAAAACTAAGTTGAGGAAAATGAAGGCCAAATTGGTGGAGAGAGCGG
GGTTGACTTTCCCGTACATCAAGCAGGTGGTATCGAGGTTGTGTGATGAG
TCGCAACGGTTTACTGGTCTGAAACTAGAGGAGGAGGAGGAGGTGATGAA
GGAGAATATGACGGTGTAG

protein sequence of jgi.p|Nanoce1779_2|528928

>mRNA_5036-protein ID=mRNA_5036-protein|Name=jgi.p|Nanoce1779_2|528928|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MTRRQALPEDHEGDTQGKYGGYASDSEEEASWSWPESAEYYEYVYERQYE
AGIGFPPLVTRENRTWKEKSRRGFHLHIGAGRLGLGLVIPAVSRSKTPMG
VLQRPSDAWAPLMDTKRMDIMVNGETVLKDMIVVRDLTELPDWDERRPNL
FALSEDPILLQILVRTATSFSMSLGPFMKDVIPLLSTLPLQEEADNPADF
IAPILYAAENDHKMVEEVADALAGRVDVCTVMVDRICTDRKIGELRVEVA
CEPYEGEMVITRDPRQLPPPFSGEHVRLPSKQEQAEYFTQRKFLLVNGSH
TTLAFLTLCLRQPMQAASAAGDHELINWANCGEELHKEIWAWAVARLLIL
LTAFPTTVLMEAHDVTTEDALCDVLLAYSRETLTRFESTKDTTSRVLQGG
VANRWETRLKTVDRFLKPKTKLRKMKAKLVERAGLTFPYIKQVVSRLCDE
SQRFTGLKLEEEEEVMKENMTV*

mRNA from alignment at scaffold_12:295123..296637-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5036 ID=mRNA_5036|Name=jgi.p|Nanoce1779_2|528928|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp|location=Sequence derived from alignment at scaffold_12:295123..296637- (Nannochloropsis oceanica)
ATGACACGGCGACAAGCTTTGCCTGAAGATCATGAAGGAGACACACAAGG
CAAATATGGGGGCTATGCGAGTGATAGTGAGGAGGAAGCAAGCTGGTCCT
GGCCGGAAAGCGCCGAGTATTACGAATACGTGTACGAGCGGCAGTACGAA
GCGGGAATCGGATTTCCGCCGTTGGTGACCCGCGAGAACCGGACATGGAA
GGAAAAAAGTCGACGAGGGTTTCACCTGCACATTGGTGCGGGCCGGCTTG
GGCTGGGCCTTGTCATACCGGCCGTTTCTAGAAGCAAAACCCCGATGGGG
GTATTGCAGCGTCCGTCGGATGCGTGGGCACCACTGATGGACACGAAGCG
AATGGATATTATGGTGAATGGCGAAACTGTTTTAAAGGACATGATAGTGG
TGAGGGACCTGACTGAATTGCCTGACTGGGACGAACGCCGCCCGAACCTG
TTCGCACTCTCAGAAGACCCGATTTTGTTGCAGATTCTTGTGAGGACTGC
CACGTCATTTAGCATGAGCCTGGGCCCATTCATGAAGGATGTTATCCCCC
TGTTGTCTACGCTACCATTACAGGAAGAGGCGGACAACCCCGCTGACTTC
ATTGCCCCTATTTTATACGCGGCTGAGAACGATCATAAAATGGTGGAGGA
GGTGGCTGACGCTCTAGCGGGACGCGTGGATGTGTGTACGGTGATGGTGG
ATAGAATATGTACTGATCGCAAAATCGGAGAATTGAGGGTCGAAGTGGCT
TGTGAGCCATATGAGGGTGAGATGGTGGTGATGCCCGATAGCGCAGACAG
CACCCACCATAAGATTACTAGGGATCCGCGGCAATTGCCCCCTCCCTTCT
CGGGCGAGCATGTCCGCCTACCCTCCAAGCAGGAACAAGCCGAGTACTTC
ACGCAGAGGAAGTTTTTGTTGGTAAATGGGAGCCATACTACCTTGGCGTT
TCTGACCCTTTGCTTGAGACAGCCCATGCAAGCGGCAAGCGCTGCGGGTG
GAGATGGTTCTGCGGATGCGGGTGGGGATAAAGTCTCCAATGCTTACACC
CCTCCAGGGGATCACGAGCTGATCAATTGGGCGAATTGTGGAGAGGAGCT
ACACAAAGAGATATGGGCGTGGGCCGTGGCGAGGCTATTGATTTTGCTGA
CTGCTTTCCCGACGACGGTTTTGATGGAGGCCCACGACGTGACGACCGAA
GATGCTTTGTGCGATGTCTTGTTGGCTTACTCGAGGGAGACACTGACGAG
GTTCGAGAGTACTAAGGATACTACCTCCAGGGTGTTGCAGGGGGGGGTAG
CAAATCGGTGGGAGACACGGTTGAAAACAGTTGATAGGTTCTTGAAGCCG
AAAACTAAGTTGAGGAAAATGAAGGCCAAATTGGTGGAGAGAGCGGGGTT
GACTTTCCCGTACATCAAGCAGGTGGTATCGAGGTTGTGTGATGAGTCGC
AACGGTTTACTGGTCTGAAACTAGAGGAGGAGGAGGAGGTGATGAAGGAG
AATATGACGGTGTAG

Coding sequence (CDS) from alignment at scaffold_12:295123..296637-

>mRNA_5036 ID=mRNA_5036|Name=jgi.p|Nanoce1779_2|528928|organism=Nannochloropsis oceanica|type=CDS|length=4257bp|location=Sequence derived from alignment at scaffold_12:295123..296637- (Nannochloropsis oceanica)
GGGATCACGAGCTGATCAATTGGGCGAATTGTGGAGAGGAGCTACACAAA
GAGATATGGGCGTGGGCCGTGGCGAGGCTATTGATTTTGCTGACTGCTTT
CCCGACGACGGTTTTGATGGAGGCCCACGACGTGACGACCGAAGATGCTT
TGTGCGATGTCTTGTTGGCTTACTCGAGGGAGACACTGACGAGGTTCGAG
AGTACTAAGGATACTACCTCCAGGGTGTTGCAGGGGGGGGTAGCAAATCG
GTGGGAGACACGGTTGAAAACAGTTGATAGGTTCTTGAAGCCGAAAACTA
AGTTGAGGAAAATGAAGGCCAAATTGGTGGAGAGAGCGGGGTTGACTTTC
CCGTACATCAAGCAGGTGGTATCGAGGTTGTGTGATGAGTCGCAACGGTT
TACTGGTCTGAAACTAGAGGAGGAGGAGGAGGTGATGAAGGAGAATATGA
CGGTGTAGATTACTAGGGATCCGCGGCAATTGCCCCCTCCCTTCTCGGGC
GAGCATGTCCGCCTACCCTCCAAGCAGGAACAAGCCGAGTACTTCACGCA
GAGGAAGTTTTTGTTGGTAAATGGGAGCCATACTACCTTGGCGTTTCTGA
CCCTTTGCTTGAGACAGCCCATGCAAGCGGCAAGCGCTGCGGATGACACG
GCGACAAGCTTTGCCTGAAGATCATGAAGGAGACACACAAGGCAAATATG
GGGGCTATGCGAGTGATAGTGAGGAGGAAGCAAGCTGGTCCTGGCCGGAA
AGCGCCGAGTATTACGAATACGTGTACGAGCGGCAGTACGAAGCGGGAAT
CGGATTTCCGCCGTTGGTGACCCGCGAGAACCGGACATGGAAGGAAAAAA
GTCGACGAGGGTTTCACCTGCACATTGGTGCGGGCCGGCTTGGGCTGGGC
CTTGTCATACCGGCCGTTTCTAGAAGCAAAACCCCGATGGGGGTATTGCA
GCGTCCGTCGGATGCGTGGGCACCACTGATGGACACGAAGCGAATGGATA
TTATGGTGAATGGCGAAACTGTTTTAAAGGACATGATAGTGGTGAGGGAC
CTGACTGAATTGCCTGACTGGGACGAACGCCGCCCGAACCTGTTCGCACT
CTCAGAAGACCCGATTTTGTTGCAGATTCTTGTGAGGACTGCCACGTCAT
TTAGCATGAGCCTGGGCCCATTCATGAAGGATGTTATCCCCCTGTTGTCT
ACGCTACCATTACAGGAAGAGGCGGACAACCCCGCTGACTTCATTGCCCC
TATTTTATACGCGGCTGAGAACGATCATAAAATGGTGGAGGAGGTGGCTG
ACGCTCTAGCGGGACGCGTGGATGTGTGTACGGTGATGGTGGATAGAATA
TGTACTGATCGCAAAATCGGAGAATTGAGGGTCGAAGTGGCTTGTGAGCC
ATATGAGGGTGAGATGGTGGGGATCACGAGCTGATCAATTGGGCGAATTG
TGGAGAGGAGCTACACAAAGAGATATGGGCGTGGGCCGTGGCGAGGCTAT
TGATTTTGCTGACTGCTTTCCCGACGACGGTTTTGATGGAGGCCCACGAC
GTGACGACCGAAGATGCTTTGTGCGATGTCTTGTTGGCTTACTCGAGGGA
GACACTGACGAGGTTCGAGAGTACTAAGGATACTACCTCCAGGGTGTTGC
AGGGGGGGGTAGCAAATCGGTGGGAGACACGGTTGAAAACAGTTGATAGG
TTCTTGAAGCCGAAAACTAAGTTGAGGAAAATGAAGGCCAAATTGGTGGA
GAGAGCGGGGTTGACTTTCCCGTACATCAAGCAGGTGGTATCGAGGTTGT
GTGATGAGTCGCAACGGTTTACTGGTCTGAAACTAGAGGAGGAGGAGGAG
GTGATGAAGGAGAATATGACGGTGTAGATTACTAGGGATCCGCGGCAATT
GCCCCCTCCCTTCTCGGGCGAGCATGTCCGCCTACCCTCCAAGCAGGAAC
AAGCCGAGTACTTCACGCAGAGGAAGTTTTTGTTGGTAAATGGGAGCCAT
ACTACCTTGGCGTTTCTGACCCTTTGCTTGAGACAGCCCATGCAAGCGGC
AAGCGCTGCGGATGACACGGCGACAAGCTTTGCCTGAAGATCATGAAGGA
GACACACAAGGCAAATATGGGGGCTATGCGAGTGATAGTGAGGAGGAAGC
AAGCTGGTCCTGGCCGGAAAGCGCCGAGTATTACGAATACGTGTACGAGC
GGCAGTACGAAGCGGGAATCGGATTTCCGCCGTTGGTGACCCGCGAGAAC
CGGACATGGAAGGAAAAAAGTCGACGAGGGTTTCACCTGCACATTGGTGC
GGGCCGGCTTGGGCTGGGCCTTGTCATACCGGCCGTTTCTAGAAGCAAAA
CCCCGATGGGGGTATTGCAGCGTCCGTCGGATGCGTGGGCACCACTGATG
GACACGAAGCGAATGGATATTATGGTGAATGGCGAAACTGTTTTAAAGGA
CATGATAGTGGTGAGGGACCTGACTGAATTGCCTGACTGGGACGAACGCC
GCCCGAACCTGTTCGCACTCTCAGAAGACCCGATTTTGTTGCAGATTCTT
GTGAGGACTGCCACGTCATTTAGCATGAGCCTGGGCCCATTCATGAAGGA
TGTTATCCCCCTGTTGTCTACGCTACCATTACAGGAAGAGGCGGACAACC
CCGCTGACTTCATTGCCCCTATTTTATACGCGGCTGAGAACGATCATAAA
ATGGTGGAGGAGGTGGCTGACGCTCTAGCGGGACGCGTGGATGTGTGTAC
GGTGATGGTGGATAGAATATGTACTGATCGCAAAATCGGAGAATTGAGGG
TCGAAGTGGCTTGTGAGCCATATGAGGGTGAGATGGTGGGGATCACGAGC
TGATCAATTGGGCGAATTGTGGAGAGGAGCTACACAAAGAGATATGGGCG
TGGGCCGTGGCGAGGCTATTGATTTTGCTGACTGCTTTCCCGACGACGGT
TTTGATGGAGGCCCACGACGTGACGACCGAAGATGCTTTGTGCGATGTCT
TGTTGGCTTACTCGAGGGAGACACTGACGAGGTTCGAGAGTACTAAGGAT
ACTACCTCCAGGGTGTTGCAGGGGGGGGTAGCAAATCGGTGGGAGACACG
GTTGAAAACAGTTGATAGGTTCTTGAAGCCGAAAACTAAGTTGAGGAAAA
TGAAGGCCAAATTGGTGGAGAGAGCGGGGTTGACTTTCCCGTACATCAAG
CAGGTGGTATCGAGGTTGTGTGATGAGTCGCAACGGTTTACTGGTCTGAA
ACTAGAGGAGGAGGAGGAGGTGATGAAGGAGAATATGACGGTGTAGATTA
CTAGGGATCCGCGGCAATTGCCCCCTCCCTTCTCGGGCGAGCATGTCCGC
CTACCCTCCAAGCAGGAACAAGCCGAGTACTTCACGCAGAGGAAGTTTTT
GTTGGTAAATGGGAGCCATACTACCTTGGCGTTTCTGACCCTTTGCTTGA
GACAGCCCATGCAAGCGGCAAGCGCTGCGGATGACACGGCGACAAGCTTT
GCCTGAAGATCATGAAGGAGACACACAAGGCAAATATGGGGGCTATGCGA
GTGATAGTGAGGAGGAAGCAAGCTGGTCCTGGCCGGAAAGCGCCGAGTAT
TACGAATACGTGTACGAGCGGCAGTACGAAGCGGGAATCGGATTTCCGCC
GTTGGTGACCCGCGAGAACCGGACATGGAAGGAAAAAAGTCGACGAGGGT
TTCACCTGCACATTGGTGCGGGCCGGCTTGGGCTGGGCCTTGTCATACCG
GCCGTTTCTAGAAGCAAAACCCCGATGGGGGTATTGCAGCGTCCGTCGGA
TGCGTGGGCACCACTGATGGACACGAAGCGAATGGATATTATGGTGAATG
GCGAAACTGTTTTAAAGGACATGATAGTGGTGAGGGACCTGACTGAATTG
CCTGACTGGGACGAACGCCGCCCGAACCTGTTCGCACTCTCAGAAGACCC
GATTTTGTTGCAGATTCTTGTGAGGACTGCCACGTCATTTAGCATGAGCC
TGGGCCCATTCATGAAGGATGTTATCCCCCTGTTGTCTACGCTACCATTA
CAGGAAGAGGCGGACAACCCCGCTGACTTCATTGCCCCTATTTTATACGC
GGCTGAGAACGATCATAAAATGGTGGAGGAGGTGGCTGACGCTCTAGCGG
GACGCGTGGATGTGTGTACGGTGATGGTGGATAGAATATGTACTGATCGC
AAAATCGGAGAATTGAGGGTCGAAGTGGCTTGTGAGCCATATGAGGGTGA
GATGGTG

Synonyms

Publications