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Properties
| Property Name | Value |
|---|
| TranscriptId | 591279 |
| Track | FilteredModels2 |
| ProteinId | 591193 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:293732..295375 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5035 ID=mRNA_5035|Name=jgi.p|Nanoce1779_2|591193|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp
CAGAAGCACTGACAGACCCGTCGTCAACCCATGTCTGACGCTGCGCTGCC
AAATGTTGGACCTCTAATGGCAGCAGCTAGACTTCAGCGCTGCATCCCAA
AGCTGCTCCTGCTCCTACTCCTCGAGCTGGTGGTTATTGCAAGGGCATTT
ATGCCATGTCCTATCCTGCTTGCAAATGTTCCCCATGCCTCTGCCTGCAT
GGCTCTCCAGGCCACTCCCTTCTACCGTTTGACGAGGCACGCTCTCACTC
AAAGCGATCGGGCCACAATCACCATCAGCATCGCAGATGGTCGCACCTTC
GTGCTACAAGATACCTGCCCACCCACTAACCACTCCTTGTTACACGCGGA
AGTGGATCCGGCAATTTTGTCAGTGCAGGACCCTGTCTTCGGTACTCGTT
TTGACCTACGAACGGGCCGTCTACGTGGGGCATGGTGCCCGAACTCCTGG
TGGGTCCGGCGGCTGTTCAAGCCGGCGGACCTCGTGCTACTATCGTCATC
AGCGATATTGGCGGGGGAGGATTAGTCGCCGTCAGAGGCGGAGAGTCAAG
CGTATGCTCGACTGGATGATGATTCGTAGCTTCGTTCCGCTAAGAATGTG
CATATGTGAGTTAGCAATTAATATCATGACGAATGAGCGATCAGGATACA
AACAACCTGTGCATTATCTCATCGCCGGCATTCCGTGAAAGATTTTTTTT
CTTTTCGCTACAAAAATGGACAATTTCACTTCGACCATCCATGGTCCGGC
CCTTTTCTTGTCCCTTTCACCCGCAACTCCAAAACTCATTTCGAACACAG
CATACACATTTATCTCCCTTTGATTCCATTGGATTCCCTCTCTCGACACC
CTGTTCGAGACCGGGAATGAAATCGAAGCAGATCGCCGTGTATATGTCCT
TTTCACCCCTCCCTCCCTTTACGTCCAAGGAGGACCACCACAAAAACACA
ACAATTATTGGTCGGAGTAGGGGACCAACACTGTTTACTCGTCACCTCCT
TCAGGAAGTTTTATTTATCAATGGAATGATTGACAGTTAAATAGGTAAAT
ATAGGGATGTACTATTGTATGTCTCTATCTCTCACACTTATCTATCCCTC
ATTGGTCGTTTCCCCTCTGTTCCTCTACCTCTACCGCATTCCATTTTCTA
CCGCCAAACGCATGTAAAACTATGCATGCAAAAATAATGTGTTGCCGCAG
CTTTTGACTGTTGATTCTGATTCATTTCTGCCTCCTATCATCCTTTTATC
CCTCCCTTCCGCCATCTTCCCTTGTCGATTTTCCATCATTTTGGCGTCTC
ATTTCTCCACTCTTCCACTTCACCGTCTCACTCTTTGCCTTCATTTTTGT
TCTTACCCTATCCTACTTTCCCAAACGCCTACTCTCTCCCTCTACACCGT
CATATTCTCCTTCATCACCTCCTCCTCCTCCTCTAGTTTCAGACCAGTAA
ACCGTTGCGACTCATCACACAACCTCGATACCACCTGCTTGATGTACGGG
AAAGTCAACCCCGCTCTCTCCACCAATTTGGCCTTCATTTTCCTCAACTT
AGTTTTCGGCTTCAAGAACCTATCAACTGTTTTCAACCGTGTCTCCCACC
GATTTGCTACCCCCCCCTGCAACACCCTGGAGGTAGTATCCTTA back to topprotein sequence of jgi.p|Nanoce1779_2|591193 >mRNA_5035-protein ID=mRNA_5035-protein|Name=jgi.p|Nanoce1779_2|591193|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MSDAALPNVGPLMAAARLQRCIPKLLLLLLLELVVIARAFMPCPILLANV
PHASACMALQATPFYRLTRHALTQSDRATITISIADGRTFVLQDTCPPTN
HSLLHAEVDPAILSVQDPVFGTRFDLRTGRLRGAWCPNSWWVRRLFKPAD
LVLLSSSAILAGED* back to topmRNA from alignment at scaffold_12:293732..295375+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5035 ID=mRNA_5035|Name=jgi.p|Nanoce1779_2|591193|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp|location=Sequence derived from alignment at scaffold_12:293732..295375+ (Nannochloropsis oceanica)
CAGAAGCACTGACAGACCCGTCGTCAACCCATGTCTGACGCTGCGCTGCC
AAATGTTGGACCTCTAATGGCAGCAGCTAGACTTCAGCGCTGCATCCCAA
AGCTGCTCCTGCTCCTACTCCTCGAGCTGGTGGTTATTGCAAGGGCATTT
ATGCCATGTCCTATCCTGCTTGCAAATGTTCCCCATGCCTCTGCCTGCAT
GGCTCTCCAGGCCACTCCCTTCTACCGTTTGACGAGGCACGCTCTCACTC
AAAGCGATCGGGCCACAATCACCATCAGCATCGCAGATGGTCGCACCTTC
GTGCTACAAGATACCTGCCCACCCACTAACCACTCCTTGTTACACGCGGA
AGTGGATCCGGCAATTTTGTCAGTGCAGGACCCTGTCTTCGGTACTCGTT
TTGACCTACGAACGGGCCGTCTACGTGGGGCATGGTGCCCGAACTCCTGG
TGGGTCCGGCGGCTGTTCAAGCCGGCGGACCTCGTGCTACTATCGTCATC
AGCGATATTGGCGGGGGAGGATTAGTCGCCGTCAGAGGCGGAGAGTCAAG
CGTATGCTCGACTGGATGATGATTCGTAGCTTCGTTCCGCTAAGAATGTG
CATATGTGAGTTAGCAATTAATATCATGACGAATGAGCGATCAGGATACA
AACAACCTGTGCATTATCTCATCGCCGGCATTCCGTGAAAGATTTTTTTT
CTTTTCGCTACAAAAATGGACAATTTCACTTCGACCATCCATGGTCCGGC
CCTTTTCTTGTCCCTTTCACCCGCAACTCCAAAACTCATTTCGAACACAG
CATACACATTTATCTCCCTTTGATTCCATTGGATTCCCTCTCTCGACACC
CTGTTCGAGACCGGGAATGAAATCGAAGCAGATCGCCGTGTATATGTCCT
TTTCACCCCTCCCTCCCTTTACGTCCAAGGAGGACCACCACAAAAACACA
ACAATTATTGGTCGGAGTAGGGGACCAACACTGTTTACTCGTCACCTCCT
TCAGGAAGTTTTATTTATCAATGGAATGATTGACAGTTAAATAGGTAAAT
ATAGGGATGTACTATTGTATGTCTCTATCTCTCACACTTATCTATCCCTC
ATTGGTCGTTTCCCCTCTGTTCCTCTACCTCTACCGCATTCCATTTTCTA
CCGCCAAACGCATGTAAAACTATGCATGCAAAAATAATGTGTTGCCGCAG
CTTTTGACTGTTGATTCTGATTCATTTCTGCCTCCTATCATCCTTTTATC
CCTCCCTTCCGCCATCTTCCCTTGTCGATTTTCCATCATTTTGGCGTCTC
ATTTCTCCACTCTTCCACTTCACCGTCTCACTCTTTGCCTTCATTTTTGT
TCTTACCCTATCCTACTTTCCCAAACGCCTACTCTCTCCCTCTACACCGT
CATATTCTCCTTCATCACCTCCTCCTCCTCCTCTAGTTTCAGACCAGTAA
ACCGTTGCGACTCATCACACAACCTCGATACCACCTGCTTGATGTACGGG
AAAGTCAACCCCGCTCTCTCCACCAATTTGGCCTTCATTTTCCTCAACTT
AGTTTTCGGCTTCAAGAACCTATCAACTGTTTTCAACCGTGTCTCCCACC
GATTTGCTACCCCCCCCTGCAACACCCTGGAGGTAGTATCCTTA back to topCoding sequence (CDS) from alignment at scaffold_12:293732..295375+ >mRNA_5035 ID=mRNA_5035|Name=jgi.p|Nanoce1779_2|591193|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_12:293732..295375+ (Nannochloropsis oceanica)
ATGTCTGACGCTGCGCTGCCAAATGTTGGACCTCTAATGGCAGCAGCTAG
ACTTCAGCGCTGCATCCCAAAGCTGCTCCTGCTCCTACTCCTCGAGCTGG
TGGTTATTGCAAGGGCATTTATGCCATGTCCTATCCTGCTTGCAAATGTT
CCCCATGCCTCTGCCTGCATGGCTCTCCAGGCCACTCCCTTCTACCGTTT
GACGAGGCACGCTCTCACTCAAAGCGATCGGGCCACAATCACCATCAGCA
TCGCAGATGGTCGCACCTTCGTGCTACAAGATACCTGCCCACCCACTAAC
CACTCCTTGTTACACGCGGAAGTGGATCCGGCAATTTTGTCAGTGCAGGA
CCCTGTCTTCGGTACTCGTTTTGACCTACGAACGGGCCGTCTACGTGGGG
CATGGTGCCCGAACTCCTGGTGGGTCCGGCGGCTGTTCAAGCCGGCGGAC
CTCGTGCTACTATCGTCATCAGCGATATTGGCGGGGGAGGATTAG back to top
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