jgi.p|Nanoce1779_2|591189, mRNA_5034 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591189
Unique NamemRNA_5034
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1172
Alignment locationscaffold_12:291908..293550 -

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Properties
Property NameValue
TranscriptId591275
TrackFilteredModels2
ProteinId591189
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:291908..293550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591189gene_5034Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591189mRNA_5034-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5034CDS_5034Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5034 ID=mRNA_5034|Name=jgi.p|Nanoce1779_2|591189|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp
AGACTGGCAGGAGCGATGGACTCATCAGTCACGCCCCCTAAAAAAGATCT
CGACACTTGGTTGTCCACGTGGCCGAACGTGCATGGCCAATTTCGCTTTC
TCGTCACGAGATTGCAGCGGCGCAAGGTGGTAGGCTCCCTGCAATGCGCC
AAGATGACGATCGAATTGCTCAAGACCGTGATGGGCACCTGCCGATGGTC
AACCGCCGCGGAGCTCATGCGCATCGTCAAACGTGTGGGTAAAGCCCTCA
TCGACGCCCAGCCTCTTGAACTTGTTATTGGAAACATTGTCCGTCGTATC
CTTTTTCTCATCCGAGACGAGCATGCCAACAAATTACGGGAGGATCGGGC
GCGACATGGTTTAGCGACCACCTCTCTCTCTGAGGATGGGGAGGCGGCGG
ACGAGCTGAATGTGGCTGTGCCTCAGCTACGGATGGCGGTGATGGAAGCC
ATCGGGGAATTGCAATTGGAATTAGATAATGCCTATGGGGAGATATGCGA
GCTGGCACTGGAACATATTCATGCGAACGAGGTGATCTTGACGGTTGGGA
GGTCGAGGACGGTGGAGAAATTTTTGAAAGAAGCGGCGGAGAGACGGAGG
ATATTCGAGGTGATTGTTGCCGAGTCCGCCCCAACGCTCGCGGGCAGGGA
GATGGCCAAGAGCTTGGCGGCGGGCGGGATTGAAACGACGGTGATAAGCG
ACTGTGCAGTTTATGCGATCATGGCCCGAGTGAATCAGGTGTTGTTGCCT
TGTCGAGCGATGATAGCGAATGGAGGGTTAATTGCTCCGTGTGGGGGGCA
TATGGCGGCGTTGGCAGCCAAGGAGCTGTCGGTCCCGGTGGTGTGTGTGA
CGGGCTTGTTCAAGCTGAGTCCGGTTTACCGACATGACCAGGATGCGTTC
AATGATTTGAAGTCGCCCAGTTCCTTGATACCATACCCAGAGGCTGCAGC
AATGGCGGAGGGAACGGTGGACATTCTGAACCCGGCCTATGATTATGTGC
CACCGGAGTTGGTCGATTTGTACATTACCAATACGGGGGGACATCAAACG
AGCTATGTCTATCGGTTGTTGGGGGAGTATTATCACCATGATGACTCGAA
TTTGGATTAGATTAGATTGGAGAGCACGTAAACCACTTGTTCACAAAGAA
GCAACGCGAGAATATAGTTAAA
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protein sequence of jgi.p|Nanoce1779_2|591189

>mRNA_5034-protein ID=mRNA_5034-protein|Name=jgi.p|Nanoce1779_2|591189|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MDSSVTPPKKDLDTWLSTWPNVHGQFRFLVTRLQRRKVVGSLQCAKMTIE
LLKTVMGTCRWSTAAELMRIVKRVGKALIDAQPLELVIGNIVRRILFLIR
DEHANKLREDRARHGLATTSLSEDGEAADELNVAVPQLRMAVMEAIGELQ
LELDNAYGEICELALEHIHANEVILTVGRSRTVEKFLKEAAERRRIFEVI
VAESAPTLAGREMAKSLAAGGIETTVISDCAVYAIMARVNQVLLPCRAMI
ANGGLIAPCGGHMAALAAKELSVPVVCVTGLFKLSPVYRHDQDAFNDLKS
PSSLIPYPEAAAMAEGTVDILNPAYDYVPPELVDLYITNTGGHQTSYVYR
LLGEYYHHDDSNLD*
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mRNA from alignment at scaffold_12:291908..293550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5034 ID=mRNA_5034|Name=jgi.p|Nanoce1779_2|591189|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp|location=Sequence derived from alignment at scaffold_12:291908..293550- (Nannochloropsis oceanica)
AGACTGGCAGGAGCGATGGACTCATCAGTCACGCCCCCTAAAAAAGATCT
CGACACTTGGTTGTCCACGTGGCCGAACGTGCATGGCCAATTTCGCTTTC
TCGTCACGAGGTGAGAAGAGGTTTGCAATGAAGGAGGGGAGGCGGGATAG
ACTTGCCTTACCAGCATATACTCATGCCCCCGCCCCCGTACACATGCACC
CCATACCGGTGGCGATGATAGATTGCAGCGGCGCAAGGTGGTAGGCTCCC
TGCAATGCGCCAAGATGACGATCGAATTGCTCAAGTAAGTGGTGCAAGGG
GTGGGAAGGGAAGAAGCTGGCGTAGTAAATGAGGCCGGCAGCCGAAGTCT
TGCCGCCAAGTGCTCCGCTTCGAACTCCTCATCCTCACCATGAACAAGGC
TGGTTATGAGCAAGTGCACGCCCTGTCACCCACCACCGCTTGCAATGCCT
GCTTGACACATGGGCTCGCATTACTTCCCTCCTTACCCCCCCGTCTCATT
ATCCGCCCCGCCCCTGAGACAAGAAACGATGCCTGGCACTCCTCCGCACG
GAATATCCTCAAAACCTAACTTAATACCCCTTCATGTTTTTTTGCTAACT
AACATTCGCCATCTCGAACACCGAACTCTAAATAATACACATAGGACCGT
GATGGGCACCTGCCGATGGTCAACCGCCGCGGAGCTCATGCGCATCGTCA
AACGTGTGGGTAAAGCCCTCATCGACGCCCAGCCTCTTGAACTTGTTATT
GGAAACATTGTCCGTCGTATCCTTTTTCTCATCCGAGACGAGCATGCCAA
CAAATTACGGGAGGATCGGGCGCGACATGGTTTAGCGACCACCTCTCTCT
CTGAGGATGGGGAGGCGGCGGACGAGCTGAATGTGGCTGTGCCTCAGCTA
CGGATGGCGGTGATGGAAGCCATCGGGGAATTGCAATTGGAATTAGATAA
TGCCTATGGGGAGATATGCGAGCTGGCACTGGAACATATTCATGCGAACG
AGGTGATCTTGACGGTTGGGAGGTCGAGGACGGTGGAGAAATTTTTGAAA
GAAGCGGCGGAGAGACGGAGGATATTCGAGGTGATTGTTGCCGAGTCCGC
CCCAACGCTCGCGGGCAGGGAGATGGCCAAGAGCTTGGCGGCGGGCGGGA
TTGAAACGACGGTGATAAGCGACTGTGCAGTTTATGCGATCATGGCCCGA
GTGAATCAGGTGTTGTTGCCTTGTCGAGCGATGATAGCGAATGGAGGGTT
AATTGCTCCGTGTGGGGGGCATATGGCGGCGTTGGCAGCCAAGGAGCTGT
CGGTCCCGGTGGTGTGTGTGACGGGCTTGTTCAAGCTGAGTCCGGTTTAC
CGACATGACCAGGATGCGTTCAATGATTTGAAGTCGCCCAGTTCCTTGAT
ACCATACCCAGAGGCTGCAGCAATGGCGGAGGGAACGGTGGACATTCTGA
ACCCGGCCTATGATTATGTGCCACCGGAGTTGGTCGATTTGTACATTACC
AATACGGGGGGACATCAAACGAGCTATGTCTATCGGTTGTTGGGGGAGTA
TTATCACCATGATGACTCGAATTTGGATTAGATTAGATTGGAGAGCACGT
AAACCACTTGTTCACAAAGAAGCAACGCGAGAATATAGTTAAA
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Coding sequence (CDS) from alignment at scaffold_12:291908..293550-

>mRNA_5034 ID=mRNA_5034|Name=jgi.p|Nanoce1779_2|591189|organism=Nannochloropsis oceanica|type=CDS|length=3285bp|location=Sequence derived from alignment at scaffold_12:291908..293550- (Nannochloropsis oceanica)
GACCGTGATGGGCACCTGCCGATGGTCAACCGCCGCGGAGCTCATGCGCA
TCGTCAAACGTGTGGGTAAAGCCCTCATCGACGCCCAGCCTCTTGAACTT
GTTATTGGAAACATTGTCCGTCGTATCCTTTTTCTCATCCGAGACGAGCA
TGCCAACAAATTACGGGAGGATCGGGCGCGACATGGTTTAGCGACCACCT
CTCTCTCTGAGGATGGGGAGGCGGCGGACGAGCTGAATGTGGCTGTGCCT
CAGCTACGGATGGCGGTGATGGAAGCCATCGGGGAATTGCAATTGGAATT
AGATAATGCCTATGGGGAGATATGCGAGCTGGCACTGGAACATATTCATG
CGAACGAGGTGATCTTGACGGTTGGGAGGTCGAGGACGGTGGAGAAATTT
TTGAAAGAAGCGGCGGAGAGACGGAGGATATTCGAGGTGATTGTTGCCGA
GTCCGCCCCAACGCTCGCGGGCAGGGAGATGGCCAAGAGCTTGGCGGCGG
GCGGGATTGAAACGACGGTGATAAGCGACTGTGCAGTTTATGCGATCATG
GCCCGAGTGAATCAGGTGTTGTTGCCTTGTCGAGCGATGATAGCGAATGG
AGGGTTAATTGCTCCGTGTGGGGGGCATATGGCGGCGTTGGCAGCCAAGG
AGCTGTCGGTCCCGGTGGTGTGTGTGACGGGCTTGTTCAAGCTGAGTCCG
GTTTACCGACATGACCAGGATGCGTTCAATGATTTGAAGTCGCCCAGTTC
CTTGATACCATACCCAGAGGCTGCAGCAATGGCGGAGGGAACGGTGGACA
TTCTGAACCCGGCCTATGATTATGTGCCACCGGAGTTGGTCGATTTGTAC
ATTACCAATACGGGGGGACATCAAACGAGCTATGTCTATCGGTTGTTGGG
GGAGTATTATCACCATGATGACTCGAATTTGGATTAGATTGCAGCGGCGC
AAGGTGGTAGGCTCCCTGCAATGCGCCAAGATGACGATCGAATTGCTCAA
ATGGACTCATCAGTCACGCCCCCTAAAAAAGATCTCGACACTTGGTTGTC
CACGTGGCCGAACGTGCATGGCCAATTTCGCTTTCTCGTCACGAGGACCG
TGATGGGCACCTGCCGATGGTCAACCGCCGCGGAGCTCATGCGCATCGTC
AAACGTGTGGGTAAAGCCCTCATCGACGCCCAGCCTCTTGAACTTGTTAT
TGGAAACATTGTCCGTCGTATCCTTTTTCTCATCCGAGACGAGCATGCCA
ACAAATTACGGGAGGATCGGGCGCGACATGGTTTAGCGACCACCTCTCTC
TCTGAGGATGGGGAGGCGGCGGACGAGCTGAATGTGGCTGTGCCTCAGCT
ACGGATGGCGGTGATGGAAGCCATCGGGGAATTGCAATTGGAATTAGATA
ATGCCTATGGGGAGATATGCGAGCTGGCACTGGAACATATTCATGCGAAC
GAGGTGATCTTGACGGTTGGGAGGTCGAGGACGGTGGAGAAATTTTTGAA
AGAAGCGGCGGAGAGACGGAGGATATTCGAGGTGATTGTTGCCGAGTCCG
CCCCAACGCTCGCGGGCAGGGAGATGGCCAAGAGCTTGGCGGCGGGCGGG
ATTGAAACGACGGTGATAAGCGACTGTGCAGTTTATGCGATCATGGCCCG
AGTGAATCAGGTGTTGTTGCCTTGTCGAGCGATGATAGCGAATGGAGGGT
TAATTGCTCCGTGTGGGGGGCATATGGCGGCGTTGGCAGCCAAGGAGCTG
TCGGTCCCGGTGGTGTGTGTGACGGGCTTGTTCAAGCTGAGTCCGGTTTA
CCGACATGACCAGGATGCGTTCAATGATTTGAAGTCGCCCAGTTCCTTGA
TACCATACCCAGAGGCTGCAGCAATGGCGGAGGGAACGGTGGACATTCTG
AACCCGGCCTATGATTATGTGCCACCGGAGTTGGTCGATTTGTACATTAC
CAATACGGGGGGACATCAAACGAGCTATGTCTATCGGTTGTTGGGGGAGT
ATTATCACCATGATGACTCGAATTTGGATTAGATTGCAGCGGCGCAAGGT
GGTAGGCTCCCTGCAATGCGCCAAGATGACGATCGAATTGCTCAAATGGA
CTCATCAGTCACGCCCCCTAAAAAAGATCTCGACACTTGGTTGTCCACGT
GGCCGAACGTGCATGGCCAATTTCGCTTTCTCGTCACGAGGACCGTGATG
GGCACCTGCCGATGGTCAACCGCCGCGGAGCTCATGCGCATCGTCAAACG
TGTGGGTAAAGCCCTCATCGACGCCCAGCCTCTTGAACTTGTTATTGGAA
ACATTGTCCGTCGTATCCTTTTTCTCATCCGAGACGAGCATGCCAACAAA
TTACGGGAGGATCGGGCGCGACATGGTTTAGCGACCACCTCTCTCTCTGA
GGATGGGGAGGCGGCGGACGAGCTGAATGTGGCTGTGCCTCAGCTACGGA
TGGCGGTGATGGAAGCCATCGGGGAATTGCAATTGGAATTAGATAATGCC
TATGGGGAGATATGCGAGCTGGCACTGGAACATATTCATGCGAACGAGGT
GATCTTGACGGTTGGGAGGTCGAGGACGGTGGAGAAATTTTTGAAAGAAG
CGGCGGAGAGACGGAGGATATTCGAGGTGATTGTTGCCGAGTCCGCCCCA
ACGCTCGCGGGCAGGGAGATGGCCAAGAGCTTGGCGGCGGGCGGGATTGA
AACGACGGTGATAAGCGACTGTGCAGTTTATGCGATCATGGCCCGAGTGA
ATCAGGTGTTGTTGCCTTGTCGAGCGATGATAGCGAATGGAGGGTTAATT
GCTCCGTGTGGGGGGCATATGGCGGCGTTGGCAGCCAAGGAGCTGTCGGT
CCCGGTGGTGTGTGTGACGGGCTTGTTCAAGCTGAGTCCGGTTTACCGAC
ATGACCAGGATGCGTTCAATGATTTGAAGTCGCCCAGTTCCTTGATACCA
TACCCAGAGGCTGCAGCAATGGCGGAGGGAACGGTGGACATTCTGAACCC
GGCCTATGATTATGTGCCACCGGAGTTGGTCGATTTGTACATTACCAATA
CGGGGGGACATCAAACGAGCTATGTCTATCGGTTGTTGGGGGAGTATTAT
CACCATGATGACTCGAATTTGGATTAGATTGCAGCGGCGCAAGGTGGTAG
GCTCCCTGCAATGCGCCAAGATGACGATCGAATTGCTCAAATGGACTCAT
CAGTCACGCCCCCTAAAAAAGATCTCGACACTTGGTTGTCCACGTGGCCG
AACGTGCATGGCCAATTTCGCTTTCTCGTCACGAG
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Synonyms
Publications