jgi.p|Nanoce1779_2|591187, mRNA_5033 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591187
Unique NamemRNA_5033
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length615
Alignment locationscaffold_12:291264..291878 -

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Properties
Property NameValue
TranscriptId591273
TrackFilteredModels2
ProteinId591187
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:291264..291878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591187gene_5033Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591187mRNA_5033-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5033CDS_5033Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5033 ID=mRNA_5033|Name=jgi.p|Nanoce1779_2|591187|organism=Nannochloropsis oceanica|type=mRNA|length=615bp
CCCTTTTTTCTTCCGCTTGCTTGTTGGGGAAATACAAAAGAGGAATGGAA
AGAGAGAGGGAGGGAAGTCGGGAGTTGATGATGAGCTGCGAGAGGGCACG
ACGACAATATATATGAGAAATTGGAATGCTGCTGTGCACGTCGCCCTTGT
CAACTTTGCCTCATTGATCATATATTTGTTCCTTTTTCTCAAATACAATT
TTCATTTATTTAACCTTTCTGTTATTGTCTCCTTTATCTCCATTCCCCGC
GTATTGCTCTCTTCCTTTTGCCGTGTGTCATTCAAAACGGATCAGAACAT
AACTCTCCCTCTATTCCTATCCCCCTCTCTCACACCCTTTTTTCTATGGC
ATGGGTAGCCCCACCGATGCCCTTACCAACTGCTGCTTCAATAATTCAAT
CTCTTTCCTTGCCTCCGTCAAACCGGCATCTTTCTCCATGATCTGCCCCC
TCAATTCCCTCACCAACTCTTCCAAAGGCGGAATGACCAATGTCTTAAGG
TTATCCAACTCATCGTAGTAGTTCAAGAAATTTCGCTGCAAACTATCAGC
GCCTAGAGCCTCTGAATCTCCTCCTTCTCCCCCCTCCGTCTTCTCTTCCT
CTTCACCTTCTTCCT
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protein sequence of jgi.p|Nanoce1779_2|591187

>mRNA_5033-protein ID=mRNA_5033-protein|Name=jgi.p|Nanoce1779_2|591187|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MRNWNAAVHVALVNFASLIIYLFLFLKYNFHLFNLSVIVSFISIPRVLLS
SFCRVSFKTDQNITLPLFLSPSLTPFFLWHG*
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mRNA from alignment at scaffold_12:291264..291878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5033 ID=mRNA_5033|Name=jgi.p|Nanoce1779_2|591187|organism=Nannochloropsis oceanica|type=mRNA|length=615bp|location=Sequence derived from alignment at scaffold_12:291264..291878- (Nannochloropsis oceanica)
CCCTTTTTTCTTCCGCTTGCTTGTTGGGGAAATACAAAAGAGGAATGGAA
AGAGAGAGGGAGGGAAGTCGGGAGTTGATGATGAGCTGCGAGAGGGCACG
ACGACAATATATATGAGAAATTGGAATGCTGCTGTGCACGTCGCCCTTGT
CAACTTTGCCTCATTGATCATATATTTGTTCCTTTTTCTCAAATACAATT
TTCATTTATTTAACCTTTCTGTTATTGTCTCCTTTATCTCCATTCCCCGC
GTATTGCTCTCTTCCTTTTGCCGTGTGTCATTCAAAACGGATCAGAACAT
AACTCTCCCTCTATTCCTATCCCCCTCTCTCACACCCTTTTTTCTATGGC
ATGGGTAGCCCCACCGATGCCCTTACCAACTGCTGCTTCAATAATTCAAT
CTCTTTCCTTGCCTCCGTCAAACCGGCATCTTTCTCCATGATCTGCCCCC
TCAATTCCCTCACCAACTCTTCCAAAGGCGGAATGACCAATGTCTTAAGG
TTATCCAACTCATCGTAGTAGTTCAAGAAATTTCGCTGCAAACTATCAGC
GCCTAGAGCCTCTGAATCTCCTCCTTCTCCCCCCTCCGTCTTCTCTTCCT
CTTCACCTTCTTCCT
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Coding sequence (CDS) from alignment at scaffold_12:291264..291878-

>mRNA_5033 ID=mRNA_5033|Name=jgi.p|Nanoce1779_2|591187|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at scaffold_12:291264..291878- (Nannochloropsis oceanica)
ATGAGAAATTGGAATGCTGCTGTGCACGTCGCCCTTGTCAACTTTGCCTC
ATTGATCATATATTTGTTCCTTTTTCTCAAATACAATTTTCATTTATTTA
ACCTTTCTGTTATTGTCTCCTTTATCTCCATTCCCCGCGTATTGCTCTCT
TCCTTTTGCCGTGTGTCATTCAAAACGGATCAGAACATAACTCTCCCTCT
ATTCCTATCCCCCTCTCTCACACCCTTTTTTCTATGGCATGGGTAG
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Synonyms
Publications