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Properties
| Property Name | Value |
|---|
| TranscriptId | 630818 |
| Track | FilteredModels2 |
| ProteinId | 630732 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:283650..286609 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5031 ID=mRNA_5031|Name=jgi.p|Nanoce1779_2|630732|organism=Nannochloropsis oceanica|type=mRNA|length=2853bp
ACAGATCAGCTTTAGCATCATCGTTACGTACAGGCCCTCCCCCCTTTCGC
CTCGCGATGCTGCGTGCCACCGCCACAACCGGGCGGCGGCGGCTTGGGAG
CTGCAGTGACCCTGTCCTCCTCCGCTTGAGTCTCAGCCATTACGACGACT
ACGAGCAAGATGTTCCGCGGCGGCTGCCATTGCGGAGCAAGCGGCGGCTT
CGGCAAACAGCAGGGCAAACAGCATGTAACCAGCATCATCTCCTCCCCCT
ATGTCAACCACTCCTGCGGCATGCTTTCGCCTACCACGCATGTGCCGCAC
CCTCTCTATCAACTTCCGCTGCCGGAACACATCGAACAATGCGAAATACT
ATGTTTGATCGGGCTTCCTTGATCCACCTTCTACAAACACAAGTCTCCTC
CTCTTCCCTCGGCAGCGAGCTTAGGCCCCCACCAAGCAGAATCAGCGCCG
GGAGTAAGAGAAGCAGCAGCAGCACCAGCGGCAGCAAGAAGGACAAGAAA
GAAATTTCCTCCACCTTTCCCCAAACATCCAGACAGGTCAAGGAGAAATC
CGAGCACGTCGTCAAGCTCGCCTTGGGGGGAAACGTAGTCATAACCATTG
CCAAATTCTTAGCCTGGCTGCACAGTGGTTCTTCCGCCATGCTCTCTGAA
AGCATACACTCCCTGGTTGACTGCGGTAATCAAACCCTATTGCTCATCGG
CATCCGCACTGCTGCCACCGCTCCGGATAGACACCACCAATATGGGTATG
GCAAGTCAATATATTTTTGGTCCCTTGTCTCGGCACTAGGAACCTTCTGG
CTGGGCGCCGGTGTGTCCCTACGCAACAGCTTCTCGGATTTGTTAAATCC
CACGGTGCAACTGGAGGAGATCACCTGGGACGTGTGGGGGGTGCTCGGGA
TCTCGTTCGCGATCGATGGGAGCGTCTTGTACCAGACCTTTCAACTGTTG
AGGGATTCCAAGCCGAGGCATTTGACGCTTTGGGAGCATGTCCGAAGGAT
CCGGGATCCGACCACCCTAGCGGTCTTGCTTGAAGATTCCGGGGCGTGCC
TTGGTGTGGTGATGGCGATTGTGGGCATCGGTCTGTCGCAGGCTTTTGCG
AACCCGATGTTCGACAGCATTGCTGGGTGCTGCATCTCCGGCCTTTTGGC
AGCCATGGGCTTAGCGCTGGCTAGACTGAATGAAAGGTATCTGTTGGGAC
AAGCTGTGGAACCTGAGATAGTCGAAGGGATTCGTAAGTTGCTGATGGCG
AGGCCGGGTATTGACAATGTGCAGAGCGTGCAGAGTCAGTGGATTGGGCC
CTACACGTTTGCCTACAAGGCGGAGGTGGATTTTGATGGGACGTACTTGG
CGGCGAAGCTTATGGAAAGATACGAAGATGAGTTTTTGGGGTCAGCACGG
CTGAAAGAGGACTTGCCGGTTTTGTTGGCGTTTTATGCAGAGGATGTGGT
GAGGACGTTGGAGAGGGAGGTGAGAGAGGTTGAGCGGGAGATAAGGGCCT
TGCACCCCGAGGCGCAATTCATAGAGTTAGAGCCGGCTTCGAAGGATGCA
ACAGCGTTTGCAATTGATGGGCATCGGGAGAAGATGTTGAGGGAATTGGA
GCACGTGACGTTGAACCAGTTGTTGATTGCCATCGCGAAGAACGTGGTGA
AGCAACAGCAGAAGAAGGATGGAGGGGAGGAGACGAAGAAGGACAATAGC
AAGAAGTAAGCATAGGGCTACAGATGCGTGTAACAAAAAGCGAGGACAAA
TAAACTACCAAAATTTTGACTTCAAAAAGGGTCTTTTAAATGTCAACTGT
TTGGTGTTGGCGTTTGAAATTTTGTCCGAACCCGCGCCGTTTCAGAGGAG
AGCCCAGTGAGGACCGGCATTTGCGCGGCACCTCGAGGGATGTTCTAGGC
GTATGTGTGATGGGATGTGTGCTGTCTCCAGTGAATAGTGCAGTAGATAT
CATGCTGACACCGTCGATTCTTTTTGTTGAAATCTTCTCGACATTCTCCT
CACCTGACCCACCTTCCATCCCTCCATCCCTCCACATGCGAAGGCCCATC
CCCGTAAGCCACGCACTCCACCAAGCAGGCGGCCAAGGCGTACCATGCCC
GACAGATTCTTCGACTCGGGCCCTTTTGATGACCCATTTTGCCCGCCCCC
TGTGCCTACATCCACGCCTGTAACCAATCCGTTCGCCCAGCCCGAAGAAT
TCCCCTTCTGTTCCCTCGACACAGCCGCGCTGTCGGGCAAAATGGTTTTC
ATGGCCACTTCTCGTTCGTCATCCCCGCCCACCCCGGTCGGAAATCCCTT
CGAGGAACCCGACGTCTTTGCCGCCTCGTCCAAGTCCCTCCCGGCCCCCA
TGACTACAAATCCGTTGCCTTTTCAAATGGTACACCAGGCGAGAGCCCCG
GTTGCCATGGTGGTGGCGCAAATGCCACTGGCGATTGCTACTTCCCCGAC
GTCTCAGCAAGCGCGTGCGGATCATAATCAACCTACGCATGTGACCAAGC
CCGTGTATGATGATGTCAGAGCCTTTGAGTACGTCTTGGTTTGCCTTTTG
GGGGGGTTGTAAAGGCGAGAATGTACCGTCTGATTTGAGGGTGCACGTGT
CCGCTCATCGTTGGAAGTTTATTATCACCGTTCCCTCCCATGCCATCTTC
TATTTTCTCCCTCCTCCCTCCACAGTCCATACTCCCCTTCGGCCACGAAG
ACCGCGGGTACCACTCCAACTGGTCAGCTTACCTCCAGAGCAGACGCAGC
ATTGATTACCTTCAAGACGTCGCCTTTGCCCTCACCAACATCACGAAAAC
AGCAGCAGCAGGAGCAGCAGCAGCCAGAACGTCAGCTCGACGACAGCTGG
AAT back to topprotein sequence of jgi.p|Nanoce1779_2|630732 >mRNA_5031-protein ID=mRNA_5031-protein|Name=jgi.p|Nanoce1779_2|630732|organism=Nannochloropsis oceanica|type=polypeptide|length=551bp
MLRATATTGRRRLGSCSDPVLLRLSLSHYDDYEQDVPRRLPLRSKRRLRQ
TAGQTACNQHHLLPLCQPLLRHAFAYHACAAPSLSTSAAGTHRTMRNTMF
DRASLIHLLQTQVSSSSLGSELRPPPSRISAGSKRSSSSTSGSKKDKKEI
SSTFPQTSRQVKEKSEHVVKLALGGNVVITIAKFLAWLHSGSSAMLSESI
HSLVDCGNQTLLLIGIRTAATAPDRHHQYGYGKSIYFWSLVSALGTFWLG
AGVSLRNSFSDLLNPTVQLEEITWDVWGVLGISFAIDGSVLYQTFQLLRD
SKPRHLTLWEHVRRIRDPTTLAVLLEDSGACLGVVMAIVGIGLSQAFANP
MFDSIAGCCISGLLAAMGLALARLNERYLLGQAVEPEIVEGIRKLLMARP
GIDNVQSVQSQWIGPYTFAYKAEVDFDGTYLAAKLMERYEDEFLGSARLK
EDLPVLLAFYAEDVVRTLEREVREVEREIRALHPEAQFIELEPASKDATA
FAIDGHREKMLRELEHVTLNQLLIAIAKNVVKQQQKKDGGEETKKDNSKK
* back to topmRNA from alignment at scaffold_12:283650..286609- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5031 ID=mRNA_5031|Name=jgi.p|Nanoce1779_2|630732|organism=Nannochloropsis oceanica|type=mRNA|length=2960bp|location=Sequence derived from alignment at scaffold_12:283650..286609- (Nannochloropsis oceanica)
ACAGATCAGCTTTAGCATCATCGTTACGTACAGGCCCTCCCCCCTTTCGC
CTCGCGATGCTGCGTGCCACCGCCACAACCGGGCGGCGGCGGCTTGGGAG
CTGCAGTGACCCTGTCCTCCTCCGCTTGAGTCTCAGCCATTACGACGACT
ACGAGCAAGATGTTCCGCGGCGGCTGCCATTGCGGAGCAAGCGGCGGCTT
CGGCAAACAGCAGGGCAAACAGCATGTAACCAGCATCATCTCCTCCCCCT
ATGTCAACCACTCCTGCGGCATGCTTTCGCCTACCACGCATGTGCCGCAC
CCTCTCTATCAACTTCCGCTGCCGGAACACATCGAACAATGCGAAATACT
ATGTTTGATCGGGCTTCCTTGATCCACCTTCTACAAACACAAGTCTCCTC
CTCTTCCCTCGGCAGCGAGCTTAGGCCCCCACCAAGCAGAATCAGCGCCG
GGAGTAAGAGAAGCAGCAGCAGCACCAGCGGCAGCAAGAAGGACAAGAAA
GAAATTTCCTCCACCTTTCCCCAAACATCCAGACAGGTCAAGGAGAAATC
CGAGCACGTCGTCAAGCTCGCCTTGGGGGGAAACGTAGTCATAACCATTG
CCAAATTCTTAGCCTGGCTGCACAGTGGTTCTTCCGCCATGCTCTCTGAA
AGCATACACTCCCTGGTTGACTGCGGTAATCAAACCCTATTGCTCATCGG
CATCCGCACTGCTGCCACCGCTCCGGATAGACACCACCAATATGGGTATG
GCAAGTCAATATATTTTTGGTCCCTTGTCTCGGCACTAGGAACCTTCTGG
CTGGGCGCCGGTGTGTCCCTACGCAACAGCTTCTCGGATTTGTTAAATCC
CACGGTGCAACTGGAGGAGATCACCTGGGACGTGTGGGGGGTGCTCGGGA
TCTCGTTCGCGATCGATGGGAGCGTCTTGTACCAGACCTTTCAACTGTTG
AGGGATTCCAAGCCGAGGCATTTGACGCTTTGGGAGCATGTCCGAAGGAT
CCGGGATCCGACCACCCTAGCGGTCTTGCTTGAAGATTCCGGGGCGTGCC
TTGGTGTGGTGATGGCGATTGTGGGCATCGGTCTGTCGCAGGCTTTTGCG
AACCCGATGTTCGACAGCATTGCTGGGTGCTGCATCTCCGGCCTTTTGGC
AGCCATGGGCTTAGCGCTGGCTAGACTGAATGAAAGGTATCTGTTGGGAC
AAGCTGTGGAACCTGAGATAGTCGAAGGGATTCGTAAGTTGCTGATGGCG
AGGCCGGGTATTGACAATGTGCAGAGCGTGCAGAGTCAGTGGATTGGGCC
CTACACGTTTGCCTACAAGGCGGAGGTGGATTTTGATGGGACGTACTTGG
CGGCGAAGCTTATGGAAAGATACGAAGATGAGTTTTTGGGGTCAGCACGG
CTGAAAGAGGACTTGCCGGTTTTGTTGGCGTTTTATGCAGAGGATGTGGT
GAGGACGTTGGAGAGGGAGGTGAGAGAGGTTGAGCGGGAGATAAGGGCCT
TGCACCCCGAGGCGCAATTCATAGAGTTAGAGCCGGCTTCGAAGGATGCA
ACAGCGTTTGCAATTGATGGGCATCGGGAGAAGATGTTGAGGGAATTGGA
GCACGTGACGTTGAACCAGTTGTTGATTGCCATCGCGAAGAACGTGGTGA
AGCAACAGCAGAAGAAGGATGGAGGGGAGGAGACGAAGAAGGACAATAGC
AAGAAGTAAGCATAGGGCTACAGATGCGTGTAACAAAAAGCGAGGACAAA
TAAACTACCAAAATTTTGACTTCAAAAAGGGTCTTTTAAATGTCAACTGT
TTGGTGTTGGCGTTTGAAATTTTGTCCGAACCCGCGCCGTTTCAGAGGAG
AGCCCAGTGAGGACCGGCATTTGCGCGGCACCTCGAGGGATGTTCTAGGC
GTATGTGTGATGGGATGTGTGCTGTCTCCAGTGAATAGTGCAGTAGATAT
CATGCTGACACCGTCGATTCTTTTTGTTGAAATCTTCTCGACATTCTCCT
CACCTGACCCACCTTCCATCCCTCCATCCCTCCACATGCGAAGGCCCATC
CCCGTAAGCCACGCACTCCACCAAGCAGGCGGCCAAGGCGTACCATGCCC
GACAGATTCTTCGACTCGGGCCCTTTTGATGACCCATTTTGCCCGCCCCC
TGTGCCTACATCCACGCCTGTAACCAATCCGTTCGCCCAGGTAAAAAGTG
TAGATGTACGTGTGCGTAGTTTTTCCCCGTCTACCCCCTTGCTCCCTCGC
TCATACTCCACTTCTTACCCGCGTCTTTCGCCCCCACCCGCACGCAGCCC
GAAGAATTCCCCTTCTGTTCCCTCGACACAGCCGCGCTGTCGGGCAAAAT
GGTTTTCATGGCCACTTCTCGTTCGTCATCCCCGCCCACCCCGGTCGGAA
ATCCCTTCGAGGAACCCGACGTCTTTGCCGCCTCGTCCAAGTCCCTCCCG
GCCCCCATGACTACAAATCCGTTGCCTTTTCAAATGGTACACCAGGCGAG
AGCCCCGGTTGCCATGGTGGTGGCGCAAATGCCACTGGCGATTGCTACTT
CCCCGACGTCTCAGCAAGCGCGTGCGGATCATAATCAACCTACGCATGTG
ACCAAGCCCGTGTATGATGATGTCAGAGCCTTTGAGTACGTCTTGGTTTG
CCTTTTGGGGGGGTTGTAAAGGCGAGAATGTACCGTCTGATTTGAGGGTG
CACGTGTCCGCTCATCGTTGGAAGTTTATTATCACCGTTCCCTCCCATGC
CATCTTCTATTTTCTCCCTCCTCCCTCCACAGTCCATACTCCCCTTCGGC
CACGAAGACCGCGGGTACCACTCCAACTGGTCAGCTTACCTCCAGAGCAG
ACGCAGCATTGATTACCTTCAAGACGTCGCCTTTGCCCTCACCAACATCA
CGAAAACAGCAGCAGCAGGAGCAGCAGCAGCCAGAACGTCAGCTCGACGA
CAGCTGGAAT back to topCoding sequence (CDS) from alignment at scaffold_12:283650..286609- >mRNA_5031 ID=mRNA_5031|Name=jgi.p|Nanoce1779_2|630732|organism=Nannochloropsis oceanica|type=CDS|length=1653bp|location=Sequence derived from alignment at scaffold_12:283650..286609- (Nannochloropsis oceanica)
ATGCTGCGTGCCACCGCCACAACCGGGCGGCGGCGGCTTGGGAGCTGCAG
TGACCCTGTCCTCCTCCGCTTGAGTCTCAGCCATTACGACGACTACGAGC
AAGATGTTCCGCGGCGGCTGCCATTGCGGAGCAAGCGGCGGCTTCGGCAA
ACAGCAGGGCAAACAGCATGTAACCAGCATCATCTCCTCCCCCTATGTCA
ACCACTCCTGCGGCATGCTTTCGCCTACCACGCATGTGCCGCACCCTCTC
TATCAACTTCCGCTGCCGGAACACATCGAACAATGCGAAATACTATGTTT
GATCGGGCTTCCTTGATCCACCTTCTACAAACACAAGTCTCCTCCTCTTC
CCTCGGCAGCGAGCTTAGGCCCCCACCAAGCAGAATCAGCGCCGGGAGTA
AGAGAAGCAGCAGCAGCACCAGCGGCAGCAAGAAGGACAAGAAAGAAATT
TCCTCCACCTTTCCCCAAACATCCAGACAGGTCAAGGAGAAATCCGAGCA
CGTCGTCAAGCTCGCCTTGGGGGGAAACGTAGTCATAACCATTGCCAAAT
TCTTAGCCTGGCTGCACAGTGGTTCTTCCGCCATGCTCTCTGAAAGCATA
CACTCCCTGGTTGACTGCGGTAATCAAACCCTATTGCTCATCGGCATCCG
CACTGCTGCCACCGCTCCGGATAGACACCACCAATATGGGTATGGCAAGT
CAATATATTTTTGGTCCCTTGTCTCGGCACTAGGAACCTTCTGGCTGGGC
GCCGGTGTGTCCCTACGCAACAGCTTCTCGGATTTGTTAAATCCCACGGT
GCAACTGGAGGAGATCACCTGGGACGTGTGGGGGGTGCTCGGGATCTCGT
TCGCGATCGATGGGAGCGTCTTGTACCAGACCTTTCAACTGTTGAGGGAT
TCCAAGCCGAGGCATTTGACGCTTTGGGAGCATGTCCGAAGGATCCGGGA
TCCGACCACCCTAGCGGTCTTGCTTGAAGATTCCGGGGCGTGCCTTGGTG
TGGTGATGGCGATTGTGGGCATCGGTCTGTCGCAGGCTTTTGCGAACCCG
ATGTTCGACAGCATTGCTGGGTGCTGCATCTCCGGCCTTTTGGCAGCCAT
GGGCTTAGCGCTGGCTAGACTGAATGAAAGGTATCTGTTGGGACAAGCTG
TGGAACCTGAGATAGTCGAAGGGATTCGTAAGTTGCTGATGGCGAGGCCG
GGTATTGACAATGTGCAGAGCGTGCAGAGTCAGTGGATTGGGCCCTACAC
GTTTGCCTACAAGGCGGAGGTGGATTTTGATGGGACGTACTTGGCGGCGA
AGCTTATGGAAAGATACGAAGATGAGTTTTTGGGGTCAGCACGGCTGAAA
GAGGACTTGCCGGTTTTGTTGGCGTTTTATGCAGAGGATGTGGTGAGGAC
GTTGGAGAGGGAGGTGAGAGAGGTTGAGCGGGAGATAAGGGCCTTGCACC
CCGAGGCGCAATTCATAGAGTTAGAGCCGGCTTCGAAGGATGCAACAGCG
TTTGCAATTGATGGGCATCGGGAGAAGATGTTGAGGGAATTGGAGCACGT
GACGTTGAACCAGTTGTTGATTGCCATCGCGAAGAACGTGGTGAAGCAAC
AGCAGAAGAAGGATGGAGGGGAGGAGACGAAGAAGGACAATAGCAAGAAG
TAA back to top
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