jgi.p|Nanoce1779_2|591167, mRNA_5028 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591167
Unique NamemRNA_5028
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length707
Alignment locationscaffold_12:276315..277307 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591253
TrackFilteredModels2
ProteinId591167
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:276315..277307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591167gene_5028Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591167mRNA_5028-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5028CDS_5028Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5028 ID=mRNA_5028|Name=jgi.p|Nanoce1779_2|591167|organism=Nannochloropsis oceanica|type=mRNA|length=707bp
AGCCATCATGCGTGTCCTCTCCATGACTGCCCTGGTGGCAATTGCTGGAT
CTGCCGTGGCCTTCGTGCCCCAGGGCCCCAAACCCAGCGAGAAAATTAAC
ATTGGCAAAGCGCTCCAAAAATTGGCCTTGGCTCCGGCGGTGGTCCTCGG
CATCTATGCCGGCCCCATGATCCAACCCGTACACGCTGACGGCAGTGTCT
CCGCCACTACCGTCCACCGTGCACAAGGGATATACGGGCCTCGCGTGATG
GCGCTCAAGGACGCGGTCGCCAAGGGAGACTTCGACGCGATGAAGAAGGA
GGATGGTGCGGCCACCCTTTACAATTCTGGCGCGTTTGCCCTGAACCGCG
TGCAGCAGAAGGTGGTGGCGAAGGCTTACGACGATGTCCGCGCTGCTGTT
GCCAAGAAGGATGCGGGGGCGCTTAAGTCGGCATGGGCTGTGTATTTCCA
CGAGGCGGGTTTGGACAAGCCTAACCCTTTTAGGTTGGACGAGCCCGGGC
AGAGTTACTCGGGTGACTTTGATTTCAGGAAAGGCTCGCCCTTGTTTGAT
AGGTATGCCGCGGAGTTGGCGGGTGAAAGTGGGAAATAATAGGACAGGAA
ATGGAGAAGACGGAAAGGGGAAGCGAGGGAGGGAGCAAGCATGGGTGGAG
AGGCAACAATGGGATGGTCATGATATGGTGCGACCTAGAATGTCTTTGAA
GTGGAGG
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protein sequence of jgi.p|Nanoce1779_2|591167

>mRNA_5028-protein ID=mRNA_5028-protein|Name=jgi.p|Nanoce1779_2|591167|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MRVLSMTALVAIAGSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLGIY
AGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDG
AATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEA
GLDKPNPFRLDEPGQSYSGDFDFRKGSPLFDRYAAELAGESGK*
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mRNA from alignment at scaffold_12:276315..277307+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5028 ID=mRNA_5028|Name=jgi.p|Nanoce1779_2|591167|organism=Nannochloropsis oceanica|type=mRNA|length=993bp|location=Sequence derived from alignment at scaffold_12:276315..277307+ (Nannochloropsis oceanica)
AGCCATCATGCGTGTCCTCTCCATGACTGCCCTGGTGGCAATTGCTGGAT
CTGCCGTGGCCTTCGTGCCCCAGGGCCCCAAACCCAGGTAAGTACTTGGC
AACGCGAGAGATTTGTAGATGAGTGTCGGTGCGTGGGCTTGTGTCACGCG
AAGTGGCGAGAGTCACAGTGATGTTTCCTCCGGTCCGAGCAGAGGATCTT
TTCAGTTGGCGGTGTTAGTACGAGCCTTAATTTGCGTGTATGCATGTGTA
CACTCACATATGTACATACTCAAACGTCAAAGTTGGGACACATTCATTTT
ATAATGCAGCATTCTTCCTCTTCGTTCCTCTGCACTTACTGATCATTTCC
TCTTCCCTACCTTCCTTCCGCAGCGAGAAAATTAACATTGGCAAAGCGCT
CCAAAAATTGGCCTTGGCTCCGGCGGTGGTCCTCGGCATCTATGCCGGCC
CCATGATCCAACCCGTACACGCTGACGGCAGTGTCTCCGCCACTACCGTC
CACCGTGCACAAGGGATATACGGGCCTCGCGTGATGGCGCTCAAGGACGC
GGTCGCCAAGGGAGACTTCGACGCGATGAAGAAGGAGGATGGTGCGGCCA
CCCTTTACAATTCTGGCGCGTTTGCCCTGAACCGCGTGCAGCAGAAGGTG
GTGGCGAAGGCTTACGACGATGTCCGCGCTGCTGTTGCCAAGAAGGATGC
GGGGGCGCTTAAGTCGGCATGGGCTGTGTATTTCCACGAGGCGGGTTTGG
ACAAGCCTAACCCTTTTAGGTTGGACGAGCCCGGGCAGAGTTACTCGGGT
GACTTTGATTTCAGGAAAGGCTCGCCCTTGTTTGATAGGTATGCCGCGGA
GTTGGCGGGTGAAAGTGGGAAATAATAGGACAGGAAATGGAGAAGACGGA
AAGGGGAAGCGAGGGAGGGAGCAAGCATGGGTGGAGAGGCAACAATGGGA
TGGTCATGATATGGTGCGACCTAGAATGTCTTTGAAGTGGAGG
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Coding sequence (CDS) from alignment at scaffold_12:276315..277307+

>mRNA_5028 ID=mRNA_5028|Name=jgi.p|Nanoce1779_2|591167|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_12:276315..277307+ (Nannochloropsis oceanica)
ATGCGTGTCCTCTCCATGACTGCCCTGGTGGCAATTGCTGGATCTGCCGT
GGCCTTCGTGCCCCAGGGCCCCAAACCCAGCGAGAAAATTAACATTGGCA
AAGCGCTCCAAAAATTGGCCTTGGCTCCGGCGGTGGTCCTCGGCATCTAT
GCCGGCCCCATGATCCAACCCGTACACGCTGACGGCAGTGTCTCCGCCAC
TACCGTCCACCGTGCACAAGGGATATACGGGCCTCGCGTGATGGCGCTCA
AGGACGCGGTCGCCAAGGGAGACTTCGACGCGATGAAGAAGGAGGATGGT
GCGGCCACCCTTTACAATTCTGGCGCGTTTGCCCTGAACCGCGTGCAGCA
GAAGGTGGTGGCGAAGGCTTACGACGATGTCCGCGCTGCTGTTGCCAAGA
AGGATGCGGGGGCGCTTAAGTCGGCATGGGCTGTGTATTTCCACGAGGCG
GGTTTGGACAAGCCTAACCCTTTTAGGTTGGACGAGCCCGGGCAGAGTTA
CTCGGGTGACTTTGATTTCAGGAAAGGCTCGCCCTTGTTTGATAGGTATG
CCGCGGAGTTGGCGGGTGAAAGTGGGAAATAAATGCGTGTCCTCTCCATG
ACTGCCCTGGTGGCAATTGCTGGATCTGCCGTGGCCTTCGTGCCCCAGGG
CCCCAAACCCAGCGAGAAAATTAACATTGGCAAAGCGCTCCAAAAATTGG
CCTTGGCTCCGGCGGTGGTCCTCGGCATCTATGCCGGCCCCATGATCCAA
CCCGTACACGCTGACGGCAGTGTCTCCGCCACTACCGTCCACCGTGCACA
AGGGATATACGGGCCTCGCGTGATGGCGCTCAAGGACGCGGTCGCCAAGG
GAGACTTCGACGCGATGAAGAAGGAGGATGGTGCGGCCACCCTTTACAAT
TCTGGCGCGTTTGCCCTGAACCGCGTGCAGCAGAAGGTGGTGGCGAAGGC
TTACGACGATGTCCGCGCTGCTGTTGCCAAGAAGGATGCGGGGGCGCTTA
AGTCGGCATGGGCTGTGTATTTCCACGAGGCGGGTTTGGACAAGCCTAAC
CCTTTTAGGTTGGACGAGCCCGGGCAGAGTTACTCGGGTGACTTTGATTT
CAGGAAAGGCTCGCCCTTGTTTGATAGGTATGCCGCGGAGTTGGCGGGTG
AAAGTGGGAAATAA
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Synonyms
Publications